{"id":"https://openalex.org/W4313706613","doi":"https://doi.org/10.1093/bib/bbac575","title":"Liquidhope: methylome and genomic profiling from very limited quantities of plasma-derived DNA","display_name":"Liquidhope: methylome and genomic profiling from very limited quantities of plasma-derived DNA","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4313706613","doi":"https://doi.org/10.1093/bib/bbac575","pmid":"https://pubmed.ncbi.nlm.nih.gov/36611239"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac575","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac575","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac575/48782689/bbac575.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac575/48782689/bbac575.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017117730","display_name":"Eva M. Trinidad","orcid":"https://orcid.org/0000-0001-6090-5205"},"institutions":[{"id":"https://openalex.org/I4210121834","display_name":"Leitat Technological Center","ror":"https://ror.org/02njs1t69","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210121834"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Eva Mar\u00eda Trinidad","raw_affiliation_strings":["Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain"],"raw_orcid":"https://orcid.org/0000-0001-6090-5205","affiliations":[{"raw_affiliation_string":"Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]},{"raw_affiliation_string":"Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103166753","display_name":"Enrique Vidal","orcid":"https://orcid.org/0000-0002-4217-1807"},"institutions":[{"id":"https://openalex.org/I4210121834","display_name":"Leitat Technological Center","ror":"https://ror.org/02njs1t69","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210121834"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Enrique Vidal","raw_affiliation_strings":["Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain"],"raw_orcid":"https://orcid.org/0000-0002-4217-1807","affiliations":[{"raw_affiliation_string":"Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]},{"raw_affiliation_string":"Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055279850","display_name":"Esther Coronado","orcid":"https://orcid.org/0000-0002-7487-6836"},"institutions":[{"id":"https://openalex.org/I4210121834","display_name":"Leitat Technological Center","ror":"https://ror.org/02njs1t69","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210121834"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Esther Coronado","raw_affiliation_strings":["Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain"],"raw_orcid":"https://orcid.org/0000-0002-7487-6836","affiliations":[{"raw_affiliation_string":"Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]},{"raw_affiliation_string":"Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015120537","display_name":"Anna Esteve\u2010Codina","orcid":"https://orcid.org/0000-0003-0361-2873"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Anna Esteve-Codina","raw_affiliation_strings":["CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST) , , Barcelona , Spain"],"raw_orcid":"https://orcid.org/0000-0003-0361-2873","affiliations":[{"raw_affiliation_string":"CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST) , , Barcelona , Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070400853","display_name":"Victoria Castel","orcid":"https://orcid.org/0000-0002-3792-0615"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210121834","display_name":"Leitat Technological Center","ror":"https://ror.org/02njs1t69","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210121834"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Victoria Castel","raw_affiliation_strings":["Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","Universitat Pompeu Fabra (UPF) , Barcelona 08002 , Spain"],"raw_orcid":"https://orcid.org/0000-0002-3792-0615","affiliations":[{"raw_affiliation_string":"Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF) , Barcelona 08002 , Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030873065","display_name":"Adela Ca\u00f1ete","orcid":"https://orcid.org/0000-0002-5669-5097"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I3019010403","display_name":"Hospital Universitari i Polit\u00e8cnic La Fe","ror":"https://ror.org/01ar2v535","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I3019010403","https://openalex.org/I4210166036"]},{"id":"https://openalex.org/I4210121834","display_name":"Leitat Technological Center","ror":"https://ror.org/02njs1t69","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210121834"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Adela Ca\u00f1ete","raw_affiliation_strings":["Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","Pediatric Oncology Unit, La Fe University Hospital , Valencia , Spain","Universitat Pompeu Fabra (UPF) , Barcelona 08002 , Spain"],"raw_orcid":"https://orcid.org/0000-0002-5669-5097","affiliations":[{"raw_affiliation_string":"Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]},{"raw_affiliation_string":"Pediatric Oncology Unit, La Fe University Hospital , Valencia , Spain","institution_ids":["https://openalex.org/I3019010403"]},{"raw_affiliation_string":"Universitat Pompeu Fabra (UPF) , Barcelona 08002 , Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103126507","display_name":"Marta Gut","orcid":"https://orcid.org/0000-0002-4063-7159"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta Gut","raw_affiliation_strings":["CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST) , , Barcelona , Spain"],"raw_orcid":"https://orcid.org/0000-0002-4063-7159","affiliations":[{"raw_affiliation_string":"CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST) , , Barcelona , Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091771874","display_name":"Simon Heath","orcid":"https://orcid.org/0000-0002-9550-0897"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Simon Heath","raw_affiliation_strings":["CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST) , , Barcelona , Spain"],"raw_orcid":"https://orcid.org/0000-0002-9550-0897","affiliations":[{"raw_affiliation_string":"CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST) , , Barcelona , Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064719496","display_name":"Jaime Font de Mora","orcid":"https://orcid.org/0000-0002-6816-2095"},"institutions":[{"id":"https://openalex.org/I4210121834","display_name":"Leitat Technological Center","ror":"https://ror.org/02njs1t69","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210121834"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jaime Font de Mora","raw_affiliation_strings":["Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain"],"raw_orcid":"https://orcid.org/0000-0002-6816-2095","affiliations":[{"raw_affiliation_string":"Clinical and Translational Research in Cancer, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]},{"raw_affiliation_string":"Laboratory of Cellular and Molecular Biology, Health Research Institute Hospital La Fe , Valencia , Spain","institution_ids":["https://openalex.org/I4210121834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5017117730"],"corresponding_institution_ids":["https://openalex.org/I4210121834"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.5955,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.67545765,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12226","display_name":"Neuroblastoma Research and Treatments","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12226","display_name":"Neuroblastoma Research and Treatments","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12334","display_name":"Lung Cancer Research Studies","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.9049488306045532},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7917116284370422},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.635252058506012},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6149153113365173},{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.5906971096992493},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5269423723220825},{"id":"https://openalex.org/keywords/cell-free-fetal-dna","display_name":"Cell-free fetal DNA","score":0.49703148007392883},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4792185425758362},{"id":"https://openalex.org/keywords/methylated-dna-immunoprecipitation","display_name":"Methylated DNA immunoprecipitation","score":0.4603104591369629},{"id":"https://openalex.org/keywords/liquid-biopsy","display_name":"Liquid biopsy","score":0.4487980604171753},{"id":"https://openalex.org/keywords/genomic-dna","display_name":"genomic DNA","score":0.4396367073059082},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3905330300331116},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27684688568115234},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.27012038230895996},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26787063479423523},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18618348240852356},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11747214198112488}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.9049488306045532},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7917116284370422},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.635252058506012},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6149153113365173},{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.5906971096992493},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5269423723220825},{"id":"https://openalex.org/C152110520","wikidata":"https://www.wikidata.org/wiki/Q14225730","display_name":"Cell-free fetal DNA","level":5,"score":0.49703148007392883},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4792185425758362},{"id":"https://openalex.org/C116114238","wikidata":"https://www.wikidata.org/wiki/Q6823960","display_name":"Methylated DNA immunoprecipitation","level":5,"score":0.4603104591369629},{"id":"https://openalex.org/C2779529041","wikidata":"https://www.wikidata.org/wiki/Q22349364","display_name":"Liquid biopsy","level":3,"score":0.4487980604171753},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.4396367073059082},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3905330300331116},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27684688568115234},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.27012038230895996},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26787063479423523},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18618348240852356},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11747214198112488},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2779234561","wikidata":"https://www.wikidata.org/wiki/Q11995","display_name":"Pregnancy","level":2,"score":0.0},{"id":"https://openalex.org/C172680121","wikidata":"https://www.wikidata.org/wiki/Q26513","display_name":"Fetus","level":3,"score":0.0},{"id":"https://openalex.org/C2778258057","wikidata":"https://www.wikidata.org/wiki/Q1136569","display_name":"Prenatal diagnosis","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073888","descriptor_name":"Cell-Free Nucleic Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081122","descriptor_name":"Epigenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbac575","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac575","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac575/48782689/bbac575.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36611239","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36611239","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/56266","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/56266","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:9851319","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9851319","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9851319/pdf/bbac575.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:riunet.upv.es:10251/206292","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/206292","pdf_url":"https://riunet.upv.es/bitstream/10251/206292/1/TrinidadVidalCoronado%20-%20Liquidhope%20methylome%20and%20genomic%20profiling%20from%20very%20limited%20quantities%20o....pdf","source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac575","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac575","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac575/48782689/bbac575.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G2634213567","display_name":null,"funder_award_id":"PID2020-119323RB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5739719242","display_name":null,"funder_award_id":"PRDVA19004CORO","funder_id":"https://openalex.org/F4320321411","funder_display_name":"Fundaci\u00f3n Cient\u00edfica Asociaci\u00f3n Espa\u00f1ola Contra el C\u00e1ncer"},{"id":"https://openalex.org/G7811150410","display_name":null,"funder_award_id":"TRNSC18001FON","funder_id":"https://openalex.org/F4320321411","funder_display_name":"Fundaci\u00f3n Cient\u00edfica Asociaci\u00f3n Espa\u00f1ola Contra el C\u00e1ncer"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321411","display_name":"Fundaci\u00f3n Cient\u00edfica Asociaci\u00f3n Espa\u00f1ola Contra el C\u00e1ncer","ror":"https://ror.org/00gxct719"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4313706613.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1493702629","https://openalex.org/W1762505455","https://openalex.org/W2019535129","https://openalex.org/W2024280594","https://openalex.org/W2024518298","https://openalex.org/W2025279347","https://openalex.org/W2026895768","https://openalex.org/W2030083301","https://openalex.org/W2036282108","https://openalex.org/W2053309035","https://openalex.org/W2062755839","https://openalex.org/W2079345276","https://openalex.org/W2104093494","https://openalex.org/W2109378990","https://openalex.org/W2114919688","https://openalex.org/W2122906783","https://openalex.org/W2126882311","https://openalex.org/W2130925781","https://openalex.org/W2149034978","https://openalex.org/W2156509269","https://openalex.org/W2157389723","https://openalex.org/W2183670742","https://openalex.org/W2196462269","https://openalex.org/W2286231267","https://openalex.org/W2556159453","https://openalex.org/W2610326370","https://openalex.org/W2744378930","https://openalex.org/W2747877968","https://openalex.org/W2766066928","https://openalex.org/W2802364378","https://openalex.org/W2888047927","https://openalex.org/W2899540665","https://openalex.org/W2902229746","https://openalex.org/W2905058646","https://openalex.org/W2980854824","https://openalex.org/W3004101682","https://openalex.org/W3109892208","https://openalex.org/W3184057816","https://openalex.org/W3211367330","https://openalex.org/W3212511431","https://openalex.org/W4224237438"],"related_works":["https://openalex.org/W2153751762","https://openalex.org/W2054284274","https://openalex.org/W2589930442","https://openalex.org/W2355414042","https://openalex.org/W2106446870","https://openalex.org/W2370756996","https://openalex.org/W2163552633","https://openalex.org/W3163634426","https://openalex.org/W2150651400","https://openalex.org/W4313706613"],"abstract_inverted_index":{"Analysis":[0],"of":[1,4,41,54,121,130],"the":[2,30,39,101],"methylome":[3,129],"tumor":[5],"cell-free":[6],"deoxyribonucleic":[7],"acid":[8],"(DNA;":[9],"cfDNA)":[10],"has":[11],"emerged":[12],"as":[13],"a":[14,67],"powerful":[15],"non-invasive":[16],"technique":[17],"for":[18,45,69,143],"cancer":[19,131],"subtyping":[20,72],"and":[21,32,47,73,95,104],"prognosis.":[22],"However,":[23],"its":[24],"application":[25],"is":[26,111,140,151],"frequently":[27],"hampered":[28],"by":[29,82,125,153],"quality":[31],"total":[33],"cfDNA":[34,44,109],"yield.":[35],"Here,":[36],"we":[37],"demonstrate":[38],"feasibility":[40],"very":[42],"low-input":[43],"whole-methylome":[46],"copy-number":[48],"profiling":[49],"studies":[50],"using":[51],"enzymatic":[52],"conversion":[53,94],"unmethylated":[55],"cysteines":[56],"[enzymatic":[57],"methyl-seq":[58],"(EM-seq)]":[59],"to":[60,127],"better":[61],"preserve":[62],"DNA":[63],"integrity.":[64],"We":[65,78],"created":[66],"model":[68],"predicting":[70],"genomic":[71],"prognosis":[74],"with":[75,87,92,113],"high":[76],"accuracy.":[77],"validated":[79],"our":[80],"tool":[81],"comparing":[83],"whole-genome":[84],"CpG":[85],"sequencing":[86],"in":[88,114,135,156],"situ":[89,115],"cohorts":[90],"generated":[91],"bisulfite":[93],"array":[96],"hybridization,":[97],"demonstrating":[98],"that,":[99],"despite":[100],"different":[102],"techniques":[103],"sample":[105],"origins,":[106],"information":[107],"on":[108],"methylation":[110],"comparable":[112],"cohorts.":[116,137],"Our":[117],"findings":[118],"support":[119],"use":[120],"liquid":[122],"biopsy":[123],"followed":[124],"EM-seq":[126],"assess":[128],"patients,":[132],"enabling":[133],"validation":[134],"external":[136],"This":[138],"advance":[139],"particularly":[141],"relevant":[142],"rare":[144],"cancers":[145],"like":[146],"neuroblastomas":[147],"where":[148],"liquid-biopsy":[149],"volume":[150],"restricted":[152],"ethical":[154],"regulations":[155],"pediatric":[157],"patients.":[158]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-10-10T00:00:00"}
