{"id":"https://openalex.org/W4312195550","doi":"https://doi.org/10.1093/bib/bbac571","title":"Matrix reconstruction with reliable neighbors for predicting potential MiRNA\u2013disease associations","display_name":"Matrix reconstruction with reliable neighbors for predicting potential MiRNA\u2013disease associations","publication_year":2022,"publication_date":"2022-12-24","ids":{"openalex":"https://openalex.org/W4312195550","doi":"https://doi.org/10.1093/bib/bbac571","pmid":"https://pubmed.ncbi.nlm.nih.gov/36567252"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac571","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac571","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034832697","display_name":"Hailin Feng","orcid":"https://orcid.org/0000-0003-2734-480X"},"institutions":[{"id":"https://openalex.org/I1284762954","display_name":"Zhejiang A & F University","ror":"https://ror.org/02vj4rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1284762954"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hailin Feng","raw_affiliation_strings":["Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China","institution_ids":["https://openalex.org/I1284762954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026535245","display_name":"Dongdong Jin","orcid":"https://orcid.org/0000-0003-4833-538X"},"institutions":[{"id":"https://openalex.org/I1284762954","display_name":"Zhejiang A & F University","ror":"https://ror.org/02vj4rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1284762954"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongdong Jin","raw_affiliation_strings":["Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China","institution_ids":["https://openalex.org/I1284762954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402608","display_name":"Jian Li","orcid":"https://orcid.org/0000-0003-3320-7924"},"institutions":[{"id":"https://openalex.org/I1284762954","display_name":"Zhejiang A & F University","ror":"https://ror.org/02vj4rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1284762954"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Li","raw_affiliation_strings":["Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China","institution_ids":["https://openalex.org/I1284762954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102844554","display_name":"Yane Li","orcid":"https://orcid.org/0000-0001-5347-1680"},"institutions":[{"id":"https://openalex.org/I1284762954","display_name":"Zhejiang A & F University","ror":"https://ror.org/02vj4rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1284762954"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yane Li","raw_affiliation_strings":["Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China","institution_ids":["https://openalex.org/I1284762954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["University of Electronic Science and Technology of China Institute of Fundamental and Frontier Sciences, , No. 2006, Xiyuan Avenue, West District, high tech Zone, 611731, Chengdu , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Electronic Science and Technology of China Institute of Fundamental and Frontier Sciences, , No. 2006, Xiyuan Avenue, West District, high tech Zone, 611731, Chengdu , China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028569265","display_name":"Tongcun Liu","orcid":"https://orcid.org/0000-0002-0520-7807"},"institutions":[{"id":"https://openalex.org/I1284762954","display_name":"Zhejiang A & F University","ror":"https://ror.org/02vj4rn06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1284762954"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tongcun Liu","raw_affiliation_strings":["Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang A&F University School of mathematics and computer science, , No.666 Wusu Street,Lin\u2019an District, 311300, Hangzhou , China","institution_ids":["https://openalex.org/I1284762954"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028569265"],"corresponding_institution_ids":["https://openalex.org/I1284762954"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.3112,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.90287736,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6330446004867554},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5579240918159485},{"id":"https://openalex.org/keywords/cross-validation","display_name":"Cross-validation","score":0.48667746782302856},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.46241068840026855},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.442261278629303},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42743709683418274},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4202159345149994},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39786872267723083},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1984291970729828},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16713541746139526},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09711498022079468}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6330446004867554},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5579240918159485},{"id":"https://openalex.org/C27181475","wikidata":"https://www.wikidata.org/wiki/Q541014","display_name":"Cross-validation","level":2,"score":0.48667746782302856},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.46241068840026855},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.442261278629303},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42743709683418274},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4202159345149994},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39786872267723083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1984291970729828},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16713541746139526},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09711498022079468},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac571","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac571","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36567252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36567252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":83,"referenced_works":["https://openalex.org/W14098964","https://openalex.org/W90362830","https://openalex.org/W1436642346","https://openalex.org/W1744683414","https://openalex.org/W1975191997","https://openalex.org/W1978337436","https://openalex.org/W2007245700","https://openalex.org/W2016106370","https://openalex.org/W2019098479","https://openalex.org/W2022732522","https://openalex.org/W2040851473","https://openalex.org/W2056750246","https://openalex.org/W2070849505","https://openalex.org/W2090422756","https://openalex.org/W2103151642","https://openalex.org/W2116531474","https://openalex.org/W2125983095","https://openalex.org/W2126619650","https://openalex.org/W2129158737","https://openalex.org/W2136870197","https://openalex.org/W2141222510","https://openalex.org/W2153210075","https://openalex.org/W2154600255","https://openalex.org/W2158135353","https://openalex.org/W2207714175","https://openalex.org/W2275703773","https://openalex.org/W2416873003","https://openalex.org/W2511620854","https://openalex.org/W2584926544","https://openalex.org/W2590492570","https://openalex.org/W2592189645","https://openalex.org/W2739999456","https://openalex.org/W2750900465","https://openalex.org/W2771545712","https://openalex.org/W2780777007","https://openalex.org/W2781702232","https://openalex.org/W2783743277","https://openalex.org/W2799307902","https://openalex.org/W2802314916","https://openalex.org/W2807490780","https://openalex.org/W2809363952","https://openalex.org/W2888216133","https://openalex.org/W2888358121","https://openalex.org/W2901239961","https://openalex.org/W2902246085","https://openalex.org/W2902400385","https://openalex.org/W2926842391","https://openalex.org/W2936479163","https://openalex.org/W2942082579","https://openalex.org/W2950834624","https://openalex.org/W2962928958","https://openalex.org/W2994851090","https://openalex.org/W2995337846","https://openalex.org/W2996338703","https://openalex.org/W3000082418","https://openalex.org/W3001440478","https://openalex.org/W3005815958","https://openalex.org/W3014506286","https://openalex.org/W3020930839","https://openalex.org/W3043771525","https://openalex.org/W3082620742","https://openalex.org/W3099000562","https://openalex.org/W3117766849","https://openalex.org/W3128027065","https://openalex.org/W3136078519","https://openalex.org/W3139418566","https://openalex.org/W3158694006","https://openalex.org/W3170286690","https://openalex.org/W3177721890","https://openalex.org/W3203908308","https://openalex.org/W3217082130","https://openalex.org/W3217728158","https://openalex.org/W4206841660","https://openalex.org/W4211170369","https://openalex.org/W4220710781","https://openalex.org/W4229630070","https://openalex.org/W4246271082","https://openalex.org/W4281553978","https://openalex.org/W6603694148","https://openalex.org/W6637241922","https://openalex.org/W6655994215","https://openalex.org/W6678900281","https://openalex.org/W6794924182"],"related_works":["https://openalex.org/W816105089","https://openalex.org/W912456583","https://openalex.org/W4318240167","https://openalex.org/W1527929073","https://openalex.org/W2961085424","https://openalex.org/W2509272512","https://openalex.org/W4224009465","https://openalex.org/W1123359532","https://openalex.org/W2955381905","https://openalex.org/W4306674287"],"abstract_inverted_index":{"Numerous":[0],"experimental":[1,50],"studies":[2,41,201],"have":[3],"indicated":[4],"that":[5,101,187],"alteration":[6],"and":[7,24,35,42,84,121,157,177,213],"dysregulation":[8],"in":[9,27],"mircroRNAs":[10],"(miRNAs)":[11],"are":[12,32,86,123,140],"associated":[13],"with":[14,52,105],"serious":[15],"diseases.":[16],"Identifying":[17],"disease-related":[18],"miRNAs":[19,218],"is":[20],"therefore":[21],"an":[22,33,169],"essential":[23],"challenging":[25],"task":[26],"bioinformatics":[28],"research.":[29],"Computational":[30],"methods":[31],"efficient":[34],"economical":[36],"alternative":[37],"to":[38,72,79,108,125,149,207],"conventional":[39],"biomedical":[40],"can":[43],"reveal":[44],"underlying":[45],"miRNA-disease":[46,70,111,129,138],"associations":[47,71,74,139],"for":[48],"subsequent":[49],"confirmation":[51],"reasonable":[53],"confidence.":[54],"Despite":[55],"the":[56,68,81,115,127,144,155,161,172,180,209],"success":[57],"of":[58,63,90,119,160,166,175,184,199,211],"existing":[59],"computational":[60],"approaches,":[61],"most":[62,116,145],"them":[64],"only":[65],"rely":[66],"on":[67],"known":[69],"predict":[73,109],"without":[75],"adding":[76],"other":[77],"data":[78,91,135],"increase":[80,150],"prediction":[82,151],"accuracy,":[83],"they":[85],"affected":[87],"by":[88,142,153,193],"issues":[89],"sparsity.":[92,136],"In":[93,113],"this":[94],"paper,":[95],"we":[96],"present":[97],"MRRN,":[98,114,212],"a":[99],"model":[100],"combines":[102],"matrix":[103],"reconstruction":[104],"node":[106],"reliability":[107],"probable":[110],"associations.":[112],"reliable":[117,146],"neighbors":[118,148],"miRNA":[120],"disease":[122],"used":[124],"update":[126],"original":[128],"association":[130],"matrix,":[131],"which":[132],"significantly":[133],"reduces":[134],"Unknown":[137],"reconstructed":[141],"aggregating":[143],"first-order":[147],"accuracy":[152,210],"representing":[154],"local":[156],"global":[158],"structure":[159],"heterogeneous":[162],"network.":[163],"Five-fold":[164],"cross-validation":[165],"MRRN":[167],"produced":[168,192],"area":[170,178],"under":[171,179],"curve":[173,182],"(AUC)":[174],"0.9355":[176],"precision-recall":[181],"(AUPR)":[183],"0.2646,":[185],"values":[186],"were":[188,205,219],"greater":[189],"than":[190],"those":[191],"comparable":[194],"models.":[195],"Two":[196],"different":[197],"types":[198],"case":[200],"using":[202],"three":[203],"diseases":[204],"conducted":[206],"demonstrate":[208],"all":[214],"top":[215],"30":[216],"predicted":[217],"verified.":[220]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
