{"id":"https://openalex.org/W4311860121","doi":"https://doi.org/10.1093/bib/bbac548","title":"Multi-view contrastive heterogeneous graph attention network for lncRNA\u2013disease association prediction","display_name":"Multi-view contrastive heterogeneous graph attention network for lncRNA\u2013disease association prediction","publication_year":2022,"publication_date":"2022-12-18","ids":{"openalex":"https://openalex.org/W4311860121","doi":"https://doi.org/10.1093/bib/bbac548","pmid":"https://pubmed.ncbi.nlm.nih.gov/36528809"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac548","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac548/48783220/bbac548.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac548/48783220/bbac548.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090393044","display_name":"Xiaosa Zhao","orcid":"https://orcid.org/0000-0003-3510-6473"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaosa Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University , Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University , Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061762910","display_name":"Jun Wu","orcid":"https://orcid.org/0000-0002-5239-5126"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Wu","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University , Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University , Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101401076","display_name":"Xiaowei Zhao","orcid":"https://orcid.org/0000-0002-9868-5102"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaowei Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University , Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University , Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023555343","display_name":"Minghao Yin","orcid":"https://orcid.org/0000-0002-6226-2394"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minghao Yin","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University , Changchun 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University , Changchun 130117, China","institution_ids":["https://openalex.org/I184983240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061762910","https://openalex.org/A5101401076"],"corresponding_institution_ids":["https://openalex.org/I184983240"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.8892,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.92711886,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9521999955177307,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9521999955177307,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8057980537414551},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.561279833316803},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5285757184028625},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.51148521900177},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4290885031223297},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4267391562461853},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4173800051212311},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4129328429698944},{"id":"https://openalex.org/keywords/heterogeneous-network","display_name":"Heterogeneous network","score":0.4126489460468292},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35455289483070374},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16482987999916077},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.12165942788124084}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8057980537414551},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.561279833316803},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5285757184028625},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.51148521900177},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4290885031223297},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4267391562461853},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4173800051212311},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4129328429698944},{"id":"https://openalex.org/C158207573","wikidata":"https://www.wikidata.org/wiki/Q5747224","display_name":"Heterogeneous network","level":4,"score":0.4126489460468292},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35455289483070374},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16482987999916077},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.12165942788124084},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C108037233","wikidata":"https://www.wikidata.org/wiki/Q11375","display_name":"Wireless network","level":3,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac548","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac548/48783220/bbac548.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36528809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36528809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbac548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac548","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac548/48783220/bbac548.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2147507192","display_name":"\u9ad8\u7ef4SMT\u516c\u5f0f\u7684\u6c42\u89e3\u4e0e\u89e3\u7a7a\u95f4\u5927\u5c0f\u8ba1\u7b97","funder_award_id":"61972384","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5327151618","display_name":null,"funder_award_id":"61976050","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7305106573","display_name":null,"funder_award_id":"2412019ZD013","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G836117879","display_name":null,"funder_award_id":"2412019FZ051","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311860121.pdf","grobid_xml":"https://content.openalex.org/works/W4311860121.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W611910056","https://openalex.org/W618024573","https://openalex.org/W622497121","https://openalex.org/W1966716734","https://openalex.org/W1975847255","https://openalex.org/W1999008082","https://openalex.org/W1999283025","https://openalex.org/W2000833392","https://openalex.org/W2013900075","https://openalex.org/W2039816251","https://openalex.org/W2057094700","https://openalex.org/W2064675550","https://openalex.org/W2067410483","https://openalex.org/W2071271349","https://openalex.org/W2106029302","https://openalex.org/W2130313087","https://openalex.org/W2139393465","https://openalex.org/W2141222510","https://openalex.org/W2141831115","https://openalex.org/W2150780222","https://openalex.org/W2152970345","https://openalex.org/W2169961966","https://openalex.org/W2313125707","https://openalex.org/W2512308096","https://openalex.org/W2531500048","https://openalex.org/W2537679995","https://openalex.org/W2571471366","https://openalex.org/W2577432673","https://openalex.org/W2766078508","https://openalex.org/W2768787438","https://openalex.org/W2772618228","https://openalex.org/W2780124552","https://openalex.org/W2801501532","https://openalex.org/W2804014966","https://openalex.org/W2890210261","https://openalex.org/W2895679848","https://openalex.org/W2899728356","https://openalex.org/W2902307998","https://openalex.org/W2918193787","https://openalex.org/W2952153265","https://openalex.org/W2961565435","https://openalex.org/W2969761002","https://openalex.org/W2971132843","https://openalex.org/W2998631884","https://openalex.org/W3000082418","https://openalex.org/W3006715646","https://openalex.org/W3014082018","https://openalex.org/W3027226623","https://openalex.org/W3045879648","https://openalex.org/W3081960698","https://openalex.org/W3099929518","https://openalex.org/W3120280121","https://openalex.org/W3145591289","https://openalex.org/W3145754360","https://openalex.org/W3187582009","https://openalex.org/W3198707249","https://openalex.org/W3201260316","https://openalex.org/W3202551657","https://openalex.org/W3210024567","https://openalex.org/W4205614329","https://openalex.org/W4206015450","https://openalex.org/W4206914775","https://openalex.org/W4213052788","https://openalex.org/W4213069590","https://openalex.org/W4285226140","https://openalex.org/W4295874962","https://openalex.org/W4308515102","https://openalex.org/W6619076491","https://openalex.org/W6631190155","https://openalex.org/W6680919041","https://openalex.org/W6726873649","https://openalex.org/W6732116548","https://openalex.org/W6779824286","https://openalex.org/W6781932242","https://openalex.org/W6783080211","https://openalex.org/W6801474913","https://openalex.org/W6846482254"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W4312814274","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703"],"abstract_inverted_index":{"MOTIVATION:":[0],"Exploring":[1],"the":[2,21,46,68,83,155,170,207,217],"potential":[3],"long":[4,191],"noncoding":[5],"RNA":[6],"(lncRNA)-disease":[7],"associations":[8],"(LDAs)":[9],"plays":[10],"a":[11,28,32,94,145,186],"critical":[12],"role":[13],"for":[14,103,108],"understanding":[15],"disease":[16,122],"etiology":[17],"and":[18,85,121,134,175,178,223],"pathogenesis.":[19],"Given":[20],"high":[22,47],"cost":[23],"of":[24,41,49,63,118,130,138,154,172,219,225],"biological":[25,115],"experiments,":[26],"developing":[27],"computational":[29,53],"method":[30],"is":[31,195,228],"practical":[33],"necessity":[34],"to":[35,59,123,149,200],"effectively":[36,201],"accelerate":[37],"experimental":[38,210],"screening":[39],"process":[40],"candidate":[42],"LDAs.":[43],"However,":[44],"under":[45],"sparsity":[48],"LDA":[50,76],"dataset,":[51],"many":[52],"models":[54],"hardly":[55],"exploit":[56],"enough":[57],"knowledge":[58],"learn":[60],"comprehensive":[61],"patterns":[62],"node":[64],"representations.":[65],"Moreover,":[66],"although":[67],"metapath-based":[69],"GNN":[70],"has":[71],"been":[72],"recently":[73],"introduced":[74],"into":[75,197],"prediction,":[77,106],"it":[78],"discards":[79],"intermediate":[80],"nodes":[81,171,181],"along":[82,206],"meta-path":[84],"results":[86],"in":[87],"information":[88,205],"loss.":[89],"RESULTS:":[90],"This":[91],"paper":[92],"presents":[93],"new":[95],"multi-view":[96],"contrastive":[97],"heterogeneous":[98,136,187],"graph":[99,129,137,152],"attention":[100,198],"network":[101,139,176,194],"(GAT)":[102],"lncRNA-disease":[104],"association":[105],"MCHNLDA":[107,111],"brevity.":[109],"Specifically,":[110],"firstly":[112],"leverages":[113],"rich":[114],"data":[116,224],"sources":[117],"lncRNA,":[119],"gene":[120],"construct":[124],"two-view":[125],"graphs,":[126],"feature":[127,131],"structural":[128],"schema":[132],"view":[133],"lncRNA-gene-disease":[135],"topology":[140],"view.":[141],"Then,":[142],"we":[143,166,184],"design":[144],"cross-contrastive":[146],"learning":[147],"task":[148],"collaboratively":[150],"guide":[151],"embeddings":[153],"two":[156],"views":[157],"without":[158],"relying":[159],"on":[160],"any":[161],"labels.":[162],"In":[163],"this":[164],"way,":[165],"can":[167],"pull":[168],"closer":[169],"similar":[173],"features":[174],"topology,":[177],"push":[179],"other":[180],"away.":[182],"Furthermore,":[183],"propose":[185],"contextual":[188],"GAT,":[189],"where":[190],"short-term":[192],"memory":[193],"incorporated":[196],"mechanism":[199],"capture":[202],"sequential":[203],"structure":[204],"meta-path.":[208],"Extensive":[209],"comparisons":[211],"against":[212],"several":[213],"state-of-the-art":[214],"methods":[215],"show":[216],"effectiveness":[218],"proposed":[220,226],"framework.The":[221],"code":[222],"framework":[227],"freely":[229],"available":[230],"at":[231],"https://github.com/zhaoxs686/MCHNLDA.":[232]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":3}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
