{"id":"https://openalex.org/W4312113926","doi":"https://doi.org/10.1093/bib/bbac545","title":"SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning","display_name":"SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning","publication_year":2022,"publication_date":"2022-12-23","ids":{"openalex":"https://openalex.org/W4312113926","doi":"https://doi.org/10.1093/bib/bbac545","pmid":"https://pubmed.ncbi.nlm.nih.gov/36562719"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac545","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac545","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac545/48782314/bbac545.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac545/48782314/bbac545.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100327430","display_name":"Xin Zhang","orcid":"https://orcid.org/0000-0002-2774-9906"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Zhang","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110758704","display_name":"Lesong Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":false,"raw_author_name":"Lesong Wei","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063256241","display_name":"Xiucai Ye","orcid":"https://orcid.org/0000-0002-5547-3919"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Xiucai Ye","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan"],"raw_orcid":"https://orcid.org/0000-0002-5547-3919","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100324049","display_name":"Kai Zhang","orcid":"https://orcid.org/0000-0003-2800-0531"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Zhang","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013766789","display_name":"Saisai Teng","orcid":null},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Saisai Teng","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062727082","display_name":"Zhongshen Li","orcid":"https://orcid.org/0000-0001-6524-4418"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhongshen Li","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089672646","display_name":"Junru Jin","orcid":"https://orcid.org/0000-0002-3688-3285"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junru Jin","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100745130","display_name":"Min Jae Kim","orcid":"https://orcid.org/0000-0002-5489-8608"},"institutions":[{"id":"https://openalex.org/I848706","display_name":"Sungkyunkwan University","ror":"https://ror.org/04q78tk20","country_code":"KR","type":"education","lineage":["https://openalex.org/I848706"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Min Jae Kim","raw_affiliation_strings":["Department of integrative Biotechnology, College of Biotechnology & Bioengineering, Sungkyunkwan University , Seobu-ro, Jangan-gu, Suwon-si, Gyeonggi-do 16419, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of integrative Biotechnology, College of Biotechnology & Bioengineering, Sungkyunkwan University , Seobu-ro, Jangan-gu, Suwon-si, Gyeonggi-do 16419, Republic of Korea","institution_ids":["https://openalex.org/I848706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038336830","display_name":"Tetsuya Sakurai","orcid":"https://orcid.org/0000-0002-5789-7547"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuya Sakurai","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101414718","display_name":"Lizhen Cui","orcid":"https://orcid.org/0000-0002-8262-8883"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lizhen Cui","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040180866","display_name":"Balachandran Manavalan","orcid":"https://orcid.org/0000-0003-0697-9419"},"institutions":[{"id":"https://openalex.org/I848706","display_name":"Sungkyunkwan University","ror":"https://ror.org/04q78tk20","country_code":"KR","type":"education","lineage":["https://openalex.org/I848706"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Balachandran Manavalan","raw_affiliation_strings":["Department of integrative Biotechnology, College of Biotechnology & Bioengineering, Sungkyunkwan University , Seobu-ro, Jangan-gu, Suwon-si, Gyeonggi-do 16419, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0003-0697-9419","affiliations":[{"raw_affiliation_string":"Department of integrative Biotechnology, College of Biotechnology & Bioengineering, Sungkyunkwan University , Seobu-ro, Jangan-gu, Suwon-si, Gyeonggi-do 16419, Republic of Korea","institution_ids":["https://openalex.org/I848706"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","JP"],"is_corresponding":true,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China"],"raw_orcid":"https://orcid.org/0000-0003-1444-190X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tsukuba , Tsukuba 3058577, Japan","institution_ids":["https://openalex.org/I146399215"]},{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5033232360","https://openalex.org/A5040180866"],"corresponding_institution_ids":["https://openalex.org/I146399215","https://openalex.org/I154099455","https://openalex.org/I848706"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.9845,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.95205004,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.7828999757766724,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.7828999757766724,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.10639999806880951,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.019200000911951065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.8152040243148804},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.7206768989562988},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7031606435775757},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.700196385383606},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.537223219871521},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5258793830871582},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5123652219772339},{"id":"https://openalex.org/keywords/recurrent-neural-network","display_name":"Recurrent neural network","score":0.4906260073184967},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4850110709667206},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4313977360725403},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.4168212413787842},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.145661860704422},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09535494446754456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09529080986976624},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06325080990791321}],"concepts":[{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.8152040243148804},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.7206768989562988},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7031606435775757},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.700196385383606},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.537223219871521},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5258793830871582},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5123652219772339},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.4906260073184967},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4850110709667206},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4313977360725403},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.4168212413787842},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.145661860704422},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09535494446754456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09529080986976624},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06325080990791321},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001692","descriptor_name":"Biological Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001692","descriptor_name":"Biological Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001692","descriptor_name":"Biological Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac545","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac545","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac545/48782314/bbac545.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36562719","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36562719","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbac545","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac545","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac545/48782314/bbac545.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G1352204243","display_name":null,"funder_award_id":"2021R1A2C1014338","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G2833016204","display_name":"\u57fa\u4e8e\u4eba\u5de5\u667a\u80fd\u7684\u591a\u80bd\u836f\u7269\u8bc6\u522b\u4e0e\u5206\u6790\u65b9\u6cd5\u7814\u7a76","funder_award_id":"62071278","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3092169881","display_name":null,"funder_award_id":"2021R1A2C1014338","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5214580874","display_name":null,"funder_award_id":"2021R1A2C1014338","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4312113926.pdf","grobid_xml":"https://content.openalex.org/works/W4312113926.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1186776093","https://openalex.org/W1490477754","https://openalex.org/W1591801644","https://openalex.org/W1609487790","https://openalex.org/W1825085207","https://openalex.org/W1985718949","https://openalex.org/W1990890768","https://openalex.org/W1996461253","https://openalex.org/W2021035239","https://openalex.org/W2042962257","https://openalex.org/W2069182579","https://openalex.org/W2096023347","https://openalex.org/W2131987814","https://openalex.org/W2138621090","https://openalex.org/W2141241945","https://openalex.org/W2168639488","https://openalex.org/W2174675568","https://openalex.org/W2187089797","https://openalex.org/W2290824142","https://openalex.org/W2342195926","https://openalex.org/W2414310543","https://openalex.org/W2608969085","https://openalex.org/W2747758005","https://openalex.org/W2766725728","https://openalex.org/W2796024961","https://openalex.org/W2807896518","https://openalex.org/W2884031225","https://openalex.org/W2891290193","https://openalex.org/W2896720233","https://openalex.org/W2898355747","https://openalex.org/W2902455138","https://openalex.org/W2914645084","https://openalex.org/W2962862931","https://openalex.org/W3005680577","https://openalex.org/W3007759740","https://openalex.org/W3010907323","https://openalex.org/W3143638934","https://openalex.org/W4200115265","https://openalex.org/W4213424733","https://openalex.org/W4225008496","https://openalex.org/W4286251201","https://openalex.org/W4287724045","https://openalex.org/W4291994084","https://openalex.org/W4385245566","https://openalex.org/W6655850106","https://openalex.org/W6737947904","https://openalex.org/W6739901393","https://openalex.org/W6745320507","https://openalex.org/W6754812645","https://openalex.org/W6756753118","https://openalex.org/W6780145172"],"related_works":["https://openalex.org/W2965546495","https://openalex.org/W4389116644","https://openalex.org/W2153315159","https://openalex.org/W3103844505","https://openalex.org/W259157601","https://openalex.org/W4205463238","https://openalex.org/W2110523656","https://openalex.org/W1482209366","https://openalex.org/W2383111961","https://openalex.org/W2365952365"],"abstract_inverted_index":{"BACKGROUND:":[0],"Cell-penetrating":[1],"peptides":[2],"(CPPs)":[3],"have":[4,37],"received":[5],"considerable":[6],"attention":[7],"as":[8,29],"a":[9,73,90,94,100,116],"means":[10],"of":[11,86,99],"transporting":[12],"pharmacologically":[13],"active":[14],"molecules":[15],"into":[16],"living":[17],"cells":[18],"without":[19],"damaging":[20],"the":[21,51,111],"cell":[22],"membrane,":[23],"and":[24,58,93,102],"thus":[25],"hold":[26],"great":[27],"promise":[28],"future":[30],"therapeutics.":[31],"Recently,":[32],"several":[33],"machine":[34],"learning-based":[35],"algorithms":[36],"been":[38],"proposed":[39,125],"for":[40,78,110,133],"predicting":[41,134],"CPPs.":[42,135],"However,":[43],"most":[44],"existing":[45,130],"predictive":[46,118],"methods":[47],"do":[48],"not":[49],"consider":[50],"agreement":[52],"(disagreement)":[53],"between":[54],"similar":[55],"(dissimilar)":[56],"CPPs":[57,80,87],"depend":[59],"heavily":[60],"on":[61,89,142],"expert":[62],"knowledge-based":[63],"handcrafted":[64],"features.":[65],"RESULTS:":[66],"In":[67],"this":[68],"study,":[69],"we":[70],"present":[71],"SiameseCPP,":[72],"novel":[74],"deep":[75],"learning":[76,107],"framework":[77],"automated":[79],"prediction.":[81],"SiameseCPP":[82,126,137],"learns":[83],"discriminative":[84],"representations":[85],"based":[88],"well-pretrained":[91],"model":[92],"Siamese":[95],"neural":[96],"network":[97],"consisting":[98],"transformer":[101],"gated":[103],"recurrent":[104],"units.":[105],"Contrastive":[106],"is":[108,127],"used":[109],"first":[112],"time":[113],"to":[114,129],"build":[115],"CPP":[117],"model.":[119],"Comprehensive":[120],"experiments":[121],"demonstrate":[122],"that":[123],"our":[124],"superior":[128],"baseline":[131],"models":[132],"Moreover,":[136],"also":[138],"achieves":[139],"good":[140],"performance":[141],"other":[143],"functional":[144],"peptide":[145],"datasets,":[146],"exhibiting":[147],"satisfactory":[148],"generalization":[149],"ability.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":5}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
