{"id":"https://openalex.org/W4311860615","doi":"https://doi.org/10.1093/bib/bbac543","title":"A comprehensive review on knowledge graphs for complex diseases","display_name":"A comprehensive review on knowledge graphs for complex diseases","publication_year":2022,"publication_date":"2022-12-18","ids":{"openalex":"https://openalex.org/W4311860615","doi":"https://doi.org/10.1093/bib/bbac543","pmid":"https://pubmed.ncbi.nlm.nih.gov/36528805"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac543","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac543","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac543/48782221/bbac543.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac543/48782221/bbac543.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082857349","display_name":"Yang Yang","orcid":"https://orcid.org/0000-0002-4397-8215"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Yang","raw_affiliation_strings":["Collaborative Innovation Center of Novel Software Technology and Industrialization , Nanjing 210000, China","School of Computer Science & Technology, Soochow University , Suzhou 215000, China"],"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization , Nanjing 210000, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science & Technology, Soochow University , Suzhou 215000, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101123997","display_name":"Yuwei Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuwei Lu","raw_affiliation_strings":["Collaborative Innovation Center of Novel Software Technology and Industrialization , Nanjing 210000, China","School of Computer Science & Technology, Soochow University , Suzhou 215000, China"],"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Novel Software Technology and Industrialization , Nanjing 210000, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science & Technology, Soochow University , Suzhou 215000, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002678361","display_name":"Wenying Yan","orcid":"https://orcid.org/0000-0001-5016-575X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenying Yan","raw_affiliation_strings":["School of Biology and Basic Medical Sciences, Medical College of Soochow University, and Center for Systems Biology, Soochow University Department of Bioinformatics, , Suzhou 215123, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Basic Medical Sciences, Medical College of Soochow University, and Center for Systems Biology, Soochow University Department of Bioinformatics, , Suzhou 215123, China","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5002678361"],"corresponding_institution_ids":["https://openalex.org/I3923682"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.1284,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.77154522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.6241393685340881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6067312359809875},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3366977274417877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2926177978515625}],"concepts":[{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.6241393685340881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6067312359809875},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3366977274417877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2926177978515625}],"mesh":[{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac543","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac543","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac543/48782221/bbac543.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36528805","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36528805","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbac543","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac543","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac543/48782221/bbac543.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1007721318","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320327518","funder_display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions"}],"funders":[{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320324720","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12"},{"id":"https://openalex.org/F4320327518","display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311860615.pdf","grobid_xml":"https://content.openalex.org/works/W4311860615.grobid-xml"},"referenced_works_count":113,"referenced_works":["https://openalex.org/W1533230146","https://openalex.org/W1538085078","https://openalex.org/W1830777114","https://openalex.org/W1964670939","https://openalex.org/W2064675550","https://openalex.org/W2098201295","https://openalex.org/W2123442489","https://openalex.org/W2127479124","https://openalex.org/W2127795553","https://openalex.org/W2145870108","https://openalex.org/W2159583324","https://openalex.org/W2169491861","https://openalex.org/W2178121026","https://openalex.org/W2346452181","https://openalex.org/W2396881363","https://openalex.org/W2515248967","https://openalex.org/W2613995098","https://openalex.org/W2734608416","https://openalex.org/W2735585131","https://openalex.org/W2766208765","https://openalex.org/W2768377508","https://openalex.org/W2769851464","https://openalex.org/W2797227230","https://openalex.org/W2899996910","https://openalex.org/W2925863688","https://openalex.org/W2937845937","https://openalex.org/W2938409691","https://openalex.org/W2942217618","https://openalex.org/W2943495877","https://openalex.org/W2946690328","https://openalex.org/W2947596730","https://openalex.org/W2949311246","https://openalex.org/W2949479579","https://openalex.org/W2966864197","https://openalex.org/W2967690619","https://openalex.org/W2972167903","https://openalex.org/W2978511610","https://openalex.org/W2979250794","https://openalex.org/W2985301765","https://openalex.org/W2990377124","https://openalex.org/W2997170098","https://openalex.org/W3002386285","https://openalex.org/W3003265726","https://openalex.org/W3004541293","https://openalex.org/W3004611733","https://openalex.org/W3007080761","https://openalex.org/W3010563230","https://openalex.org/W3017538732","https://openalex.org/W3022196642","https://openalex.org/W3022228001","https://openalex.org/W3022921518","https://openalex.org/W3023321484","https://openalex.org/W3033896008","https://openalex.org/W3034229721","https://openalex.org/W3036397942","https://openalex.org/W3038003025","https://openalex.org/W3040562930","https://openalex.org/W3041736495","https://openalex.org/W3049165041","https://openalex.org/W3088646411","https://openalex.org/W3088981549","https://openalex.org/W3089203968","https://openalex.org/W3098749216","https://openalex.org/W3099750501","https://openalex.org/W3100221118","https://openalex.org/W3111386522","https://openalex.org/W3113332183","https://openalex.org/W3120008461","https://openalex.org/W3121095945","https://openalex.org/W3125137681","https://openalex.org/W3125468681","https://openalex.org/W3126859659","https://openalex.org/W3128646645","https://openalex.org/W3130909864","https://openalex.org/W3131901903","https://openalex.org/W3146463158","https://openalex.org/W3155001903","https://openalex.org/W3156082048","https://openalex.org/W3156546789","https://openalex.org/W3162048269","https://openalex.org/W3164540570","https://openalex.org/W3168743030","https://openalex.org/W3184140580","https://openalex.org/W4205865577","https://openalex.org/W4206025858","https://openalex.org/W4229005866","https://openalex.org/W4285041540","https://openalex.org/W4292779060","https://openalex.org/W4385245566","https://openalex.org/W4387708435","https://openalex.org/W6603505381","https://openalex.org/W6631964550","https://openalex.org/W6681203831","https://openalex.org/W6684700384","https://openalex.org/W6691217215","https://openalex.org/W6739901393","https://openalex.org/W6758293299","https://openalex.org/W6761260114","https://openalex.org/W6761672038","https://openalex.org/W6762199980","https://openalex.org/W6766960179","https://openalex.org/W6766976422","https://openalex.org/W6767905578","https://openalex.org/W6770381325","https://openalex.org/W6774295163","https://openalex.org/W6776781563","https://openalex.org/W6777293656","https://openalex.org/W6778883912","https://openalex.org/W6793226434","https://openalex.org/W6795485501","https://openalex.org/W6798815685","https://openalex.org/W6810026929","https://openalex.org/W6811340617"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"knowledge":[3,74],"graphs":[4],"(KGs)":[5],"have":[6],"gained":[7],"a":[8,14,52,94,98],"great":[9],"deal":[10],"of":[11,59,64,88,101,125],"popularity":[12],"as":[13],"tool":[15],"for":[16,22,39,117,127],"storing":[17],"relationships":[18],"between":[19],"entities":[20],"and":[21,30,41,47,84,115,120,131],"performing":[23],"higher":[24],"level":[25],"reasoning.":[26],"KGs":[27,60,89,126],"in":[28,61,90,109],"biomedicine":[29],"clinical":[31],"practice":[32],"aim":[33],"to":[34,55],"provide":[35,51],"an":[36],"elegant":[37],"solution":[38],"diagnosing":[40],"treating":[42],"complex":[43,65,91,128],"diseases":[44],"more":[45],"efficiently":[46],"flexibly.":[48],"Here,":[49],"we":[50,96,105],"systematic":[53],"review":[54],"characterize":[56],"the":[57,62,70,86,102,107,110],"state-of-the-art":[58],"area":[63],"disease":[66,129],"research.":[67],"We":[68],"cover":[69],"following":[71],"topics:":[72],"(1)":[73],"sources,":[75],"(2)":[76],"entity":[77],"extraction":[78,82],"methods,":[79],"(3)":[80],"relation":[81],"methods":[83],"(4)":[85],"application":[87],"diseases.":[92],"As":[93],"result,":[95],"offer":[97],"complete":[99],"picture":[100],"domain.":[103],"Finally,":[104],"discuss":[106],"challenges":[108],"field":[111],"by":[112],"identifying":[113],"gaps":[114],"opportunities":[116],"further":[118],"research":[119,123],"propose":[121],"potential":[122],"directions":[124],"diagnosis":[130],"treatment.":[132]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
