{"id":"https://openalex.org/W4311503426","doi":"https://doi.org/10.1093/bib/bbac536","title":"Vir2Drug: a drug repurposing framework based on protein similarities between pathogens","display_name":"Vir2Drug: a drug repurposing framework based on protein similarities between pathogens","publication_year":2022,"publication_date":"2022-12-13","ids":{"openalex":"https://openalex.org/W4311503426","doi":"https://doi.org/10.1093/bib/bbac536","pmid":"https://pubmed.ncbi.nlm.nih.gov/36513376"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac536","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac536/48782154/bbac536.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac536/48782154/bbac536.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025440739","display_name":"George Minadakis","orcid":"https://orcid.org/0000-0002-7752-2208"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":true,"raw_author_name":"George Minadakis","raw_affiliation_strings":["The Cyprus Institute of Neurology & Genetics Bioinformatics Department, , 6 Iroon Avenue, 2371 Ayios Dometios, Nicosia, Cyprus | PO Box 23462, 1683 Nicosia, Cyprus","The Cyprus School of Molecular Medicine , 6 Iroon Avenue, 2371 Ayios Dometios, PO Box 23462, 1683 Nicosia, Cyprus"],"raw_orcid":"https://orcid.org/0000-0002-7752-2208","affiliations":[{"raw_affiliation_string":"The Cyprus Institute of Neurology & Genetics Bioinformatics Department, , 6 Iroon Avenue, 2371 Ayios Dometios, Nicosia, Cyprus | PO Box 23462, 1683 Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]},{"raw_affiliation_string":"The Cyprus School of Molecular Medicine , 6 Iroon Avenue, 2371 Ayios Dometios, PO Box 23462, 1683 Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072416719","display_name":"Marios Tomazou","orcid":"https://orcid.org/0000-0002-0836-5579"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Marios Tomazou","raw_affiliation_strings":["The Cyprus Institute of Neurology & Genetics Bioinformatics Department, , 6 Iroon Avenue, 2371 Ayios Dometios, Nicosia, Cyprus | PO Box 23462, 1683 Nicosia, Cyprus","The Cyprus School of Molecular Medicine , 6 Iroon Avenue, 2371 Ayios Dometios, PO Box 23462, 1683 Nicosia, Cyprus"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Cyprus Institute of Neurology & Genetics Bioinformatics Department, , 6 Iroon Avenue, 2371 Ayios Dometios, Nicosia, Cyprus | PO Box 23462, 1683 Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]},{"raw_affiliation_string":"The Cyprus School of Molecular Medicine , 6 Iroon Avenue, 2371 Ayios Dometios, PO Box 23462, 1683 Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063933209","display_name":"Nikolas Dietis","orcid":"https://orcid.org/0000-0002-8365-3837"},"institutions":[{"id":"https://openalex.org/I34771391","display_name":"University of Cyprus","ror":"https://ror.org/02qjrjx09","country_code":"CY","type":"education","lineage":["https://openalex.org/I34771391"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"Nikolas Dietis","raw_affiliation_strings":["University of Cyprus Medical School, , Nicosia 1678, Cyprus"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cyprus Medical School, , Nicosia 1678, Cyprus","institution_ids":["https://openalex.org/I34771391"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058322678","display_name":"George M. Spyrou","orcid":"https://orcid.org/0000-0002-2470-3363"},"institutions":[{"id":"https://openalex.org/I55905543","display_name":"Cyprus Institute of Neurology and Genetics","ror":"https://ror.org/01ggsp920","country_code":"CY","type":"nonprofit","lineage":["https://openalex.org/I55905543"]}],"countries":["CY"],"is_corresponding":false,"raw_author_name":"George M Spyrou","raw_affiliation_strings":["The Cyprus Institute of Neurology & Genetics Bioinformatics Department, , 6 Iroon Avenue, 2371 Ayios Dometios, Nicosia, Cyprus | PO Box 23462, 1683 Nicosia, Cyprus","The Cyprus School of Molecular Medicine , 6 Iroon Avenue, 2371 Ayios Dometios, PO Box 23462, 1683 Nicosia, Cyprus"],"raw_orcid":"https://orcid.org/0000-0002-2470-3363","affiliations":[{"raw_affiliation_string":"The Cyprus Institute of Neurology & Genetics Bioinformatics Department, , 6 Iroon Avenue, 2371 Ayios Dometios, Nicosia, Cyprus | PO Box 23462, 1683 Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]},{"raw_affiliation_string":"The Cyprus School of Molecular Medicine , 6 Iroon Avenue, 2371 Ayios Dometios, PO Box 23462, 1683 Nicosia, Cyprus","institution_ids":["https://openalex.org/I55905543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025440739"],"corresponding_institution_ids":["https://openalex.org/I55905543"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.2656,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.57248553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.7912710905075073},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.7886053323745728},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.7523393034934998},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5559433698654175},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5276927947998047},{"id":"https://openalex.org/keywords/human-pathogen","display_name":"Human pathogen","score":0.5053172707557678},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5052559971809387},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.49848008155822754},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.39982813596725464},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2680317163467407},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.2411813735961914},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14774471521377563},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14696156978607178},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.07693186402320862}],"concepts":[{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.7912710905075073},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.7886053323745728},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.7523393034934998},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5559433698654175},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5276927947998047},{"id":"https://openalex.org/C24527192","wikidata":"https://www.wikidata.org/wiki/Q17149729","display_name":"Human pathogen","level":3,"score":0.5053172707557678},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5052559971809387},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.49848008155822754},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.39982813596725464},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2680317163467407},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.2411813735961914},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14774471521377563},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14696156978607178},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.07693186402320862},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac536","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac536/48782154/bbac536.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36513376","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36513376","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9851336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9851336","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac536","pdf_url":"https://academic.oup.com/bib/article-pdf/24/1/bbac536/48782154/bbac536.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311503426.pdf","grobid_xml":"https://content.openalex.org/works/W4311503426.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W64858293","https://openalex.org/W560380770","https://openalex.org/W1019496338","https://openalex.org/W1973113689","https://openalex.org/W1979016938","https://openalex.org/W1987628681","https://openalex.org/W1994658365","https://openalex.org/W2008358843","https://openalex.org/W2023876571","https://openalex.org/W2041694079","https://openalex.org/W2043471738","https://openalex.org/W2046497407","https://openalex.org/W2053130316","https://openalex.org/W2060264243","https://openalex.org/W2066107979","https://openalex.org/W2067857298","https://openalex.org/W2068240532","https://openalex.org/W2071214884","https://openalex.org/W2084284910","https://openalex.org/W2124249167","https://openalex.org/W2128567659","https://openalex.org/W2142678031","https://openalex.org/W2145665316","https://openalex.org/W2153139855","https://openalex.org/W2157883701","https://openalex.org/W2160939409","https://openalex.org/W2162520906","https://openalex.org/W2165253681","https://openalex.org/W2168637722","https://openalex.org/W2170146596","https://openalex.org/W2322763599","https://openalex.org/W2562110925","https://openalex.org/W2807209585","https://openalex.org/W2920028299","https://openalex.org/W2953462554","https://openalex.org/W3048079539","https://openalex.org/W3095079038","https://openalex.org/W3095912752","https://openalex.org/W3119043992","https://openalex.org/W3149655533","https://openalex.org/W3160760526","https://openalex.org/W3196351118","https://openalex.org/W3197248792","https://openalex.org/W3207969687","https://openalex.org/W4211142022","https://openalex.org/W4233142859","https://openalex.org/W4281673370","https://openalex.org/W6662139537","https://openalex.org/W6781370668"],"related_works":["https://openalex.org/W2299074827","https://openalex.org/W3159848998","https://openalex.org/W4285506882","https://openalex.org/W4318481850","https://openalex.org/W4281726759","https://openalex.org/W3134564766","https://openalex.org/W3044296243","https://openalex.org/W3032892710","https://openalex.org/W4205715258","https://openalex.org/W4376478588"],"abstract_inverted_index":{"We":[0],"draw":[1],"from":[2],"the":[3,19,101,127],"assumption":[4],"that":[5,41,97],"similarities":[6,66],"between":[7,67,72],"pathogens":[8,73,122],"at":[9],"both":[10],"pathogen":[11,85],"protein":[12,15,65,105],"and":[13,24,47,74,80,111],"host":[14,81,102],"level,":[16],"may":[17],"provide":[18],"appropriate":[20],"framework":[21],"to":[22,28,45,89],"identify":[23,46],"rank":[25,48],"candidate":[26,49],"drugs":[27,50,76,91,131],"be":[29],"used":[30,88],"against":[31,118],"a":[32,37,52,109,141],"specific":[33,53,78,95],"pathogen.":[34],"Vir2Drug":[35,107],"is":[36,108,146],"drug":[38,116],"repurposing":[39,117],"tool":[40,114,145],"uses":[42],"network-based":[43],"approaches":[44],"for":[51,99,115,129],"pathogen,":[54],"combining":[55],"information":[56],"obtained":[57],"from:":[58],"(a)":[59],"ranked":[60],"pathogen-to-pathogen":[61],"networks":[62,86],"based":[63],"on":[64],"pathogens,":[68],"(b)":[69],"taxonomy":[70],"distance":[71],"(c)":[75],"targeting":[77],"pathogen's":[79,104],"proteins.":[82],"The":[83,143],"underlying":[84],"are":[87],"screen":[90],"by":[92],"means":[93],"of":[94],"methodologies":[96],"account":[98],"either":[100],"or":[103,120],"targets.":[106],"useful":[110],"yet":[112],"informative":[113],"known":[119],"unknown":[121],"especially":[123],"in":[124,135],"periods":[125],"where":[126],"emergence":[128],"repurposed":[130],"plays":[132],"significant":[133],"role":[134],"handling":[136],"viral":[137],"outbreaks,":[138],"until":[139],"reaching":[140],"vaccine.":[142],"web":[144],"available":[147],"at:":[148],"https://bioinformatics.cing.ac.cy/vir2drug,":[149],"https://vir2drug.cing-big.hpcf.cyi.ac.cy.":[150]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2025-10-10T00:00:00"}
