{"id":"https://openalex.org/W4311821010","doi":"https://doi.org/10.1093/bib/bbac534","title":"Predicting molecular properties based on the interpretable graph neural network with multistep focus mechanism","display_name":"Predicting molecular properties based on the interpretable graph neural network with multistep focus mechanism","publication_year":2022,"publication_date":"2022-12-16","ids":{"openalex":"https://openalex.org/W4311821010","doi":"https://doi.org/10.1093/bib/bbac534","pmid":"https://pubmed.ncbi.nlm.nih.gov/36526280"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac534","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac534","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055265137","display_name":"Yanan Tian","orcid":"https://orcid.org/0000-0002-2344-7484"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yanan Tian","raw_affiliation_strings":["Faculty of Applied Science, Macao Polytechnic University , Macao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Applied Science, Macao Polytechnic University , Macao, China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068273646","display_name":"Xiaorui Wang","orcid":"https://orcid.org/0000-0001-6893-2013"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Xiaorui Wang","raw_affiliation_strings":["State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology , Macao, China"],"raw_orcid":"https://orcid.org/0000-0001-6893-2013","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology , Macao, China","institution_ids":["https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037785133","display_name":"Xiaojun Yao","orcid":"https://orcid.org/0000-0002-8974-0173"},"institutions":[{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Xiaojun Yao","raw_affiliation_strings":["State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology , Macao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Quality Research in Chinese Medicines, Macau University of Science and Technology , Macao, China","institution_ids":["https://openalex.org/I111950717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054987508","display_name":"Huanxiang Liu","orcid":"https://orcid.org/0000-0002-9284-3667"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":true,"raw_author_name":"Huanxiang Liu","raw_affiliation_strings":["Faculty of Applied Science, Macao Polytechnic University , Macao, China"],"raw_orcid":"https://orcid.org/0000-0002-9284-3667","affiliations":[{"raw_affiliation_string":"Faculty of Applied Science, Macao Polytechnic University , Macao, China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060356390","display_name":"Ying Yang","orcid":"https://orcid.org/0000-0002-2032-9183"},"institutions":[{"id":"https://openalex.org/I4210152526","display_name":"Guangdong Provincial Center for Disease Control and Prevention","ror":"https://ror.org/04tms6279","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210152526"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying Yang","raw_affiliation_strings":["Department of Quality Management, Guangdong Provincial Center for Disease Prevention and Control , Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Quality Management, Guangdong Provincial Center for Disease Prevention and Control , Guangzhou, China","institution_ids":["https://openalex.org/I4210152526"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054987508","https://openalex.org/A5060356390"],"corresponding_institution_ids":["https://openalex.org/I4210152526","https://openalex.org/I49835588"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.9888,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.88281727,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9332000017166138,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.7136220335960388},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.6816601157188416},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6521193981170654},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5329728126525879},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5221819877624512},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5100300908088684},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33398735523223877},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1735137403011322}],"concepts":[{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.7136220335960388},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.6816601157188416},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6521193981170654},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5329728126525879},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5221819877624512},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5100300908088684},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33398735523223877},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1735137403011322},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac534","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac534","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36526280","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36526280","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W1501856433","https://openalex.org/W1738019091","https://openalex.org/W1999644586","https://openalex.org/W2041070822","https://openalex.org/W2064675550","https://openalex.org/W2079395738","https://openalex.org/W2088252378","https://openalex.org/W2115877902","https://openalex.org/W2139906443","https://openalex.org/W2148781362","https://openalex.org/W2290847742","https://openalex.org/W2318099008","https://openalex.org/W2594183968","https://openalex.org/W2726670313","https://openalex.org/W2895884529","https://openalex.org/W2964015378","https://openalex.org/W2966357564","https://openalex.org/W2968734407","https://openalex.org/W2969457089","https://openalex.org/W2972317931","https://openalex.org/W2977595407","https://openalex.org/W2983721890","https://openalex.org/W3000120900","https://openalex.org/W3000478925","https://openalex.org/W3007309629","https://openalex.org/W3015208165","https://openalex.org/W3033892090","https://openalex.org/W3034231628","https://openalex.org/W3034371431","https://openalex.org/W3034902920","https://openalex.org/W3095883070","https://openalex.org/W3100157108","https://openalex.org/W3103717137","https://openalex.org/W3105503635","https://openalex.org/W3129168016","https://openalex.org/W3145734614","https://openalex.org/W3157853087","https://openalex.org/W3163493952","https://openalex.org/W3203345468","https://openalex.org/W3206844021","https://openalex.org/W4224298369","https://openalex.org/W4235210970","https://openalex.org/W4287642280","https://openalex.org/W4288419263","https://openalex.org/W4300537282","https://openalex.org/W4311833010","https://openalex.org/W4411658519","https://openalex.org/W6637865168","https://openalex.org/W6726873649","https://openalex.org/W6756607754","https://openalex.org/W6760045743","https://openalex.org/W6763140224","https://openalex.org/W6767288045","https://openalex.org/W6767787176","https://openalex.org/W6772315754","https://openalex.org/W6773058098","https://openalex.org/W6778953688","https://openalex.org/W6784614190","https://openalex.org/W6784653527","https://openalex.org/W6786048916","https://openalex.org/W6788147755","https://openalex.org/W6810623460"],"related_works":["https://openalex.org/W2382997850","https://openalex.org/W2390968135","https://openalex.org/W2382213751","https://openalex.org/W2351750670","https://openalex.org/W1597848696","https://openalex.org/W2354715126","https://openalex.org/W2388563748","https://openalex.org/W2375179084","https://openalex.org/W2366646518","https://openalex.org/W2012531322"],"abstract_inverted_index":{"Graph":[0],"neural":[1,52,62],"networks":[2],"based":[3],"on":[4,50],"deep":[5,117],"learning":[6,22],"methods":[7],"have":[8],"been":[9],"extensively":[10],"applied":[11],"to":[12,84,114,163],"the":[13,37,41,51,74,78,85,89,94,97,100,120,124,131,140,148,151,156,166],"molecular":[14],"property":[15],"prediction":[16,43,54,136],"because":[17],"of":[18,29,99,119,123,150,158,178],"its":[19],"powerful":[20],"feature":[21],"ability":[23],"and":[24,34,173],"good":[25,135],"performance.":[26],"However,":[27],"most":[28],"them":[30],"are":[31,81],"black":[32],"boxes":[33],"cannot":[35],"give":[36],"reasonable":[38],"explanation":[39],"about":[40],"underlying":[42],"mechanisms,":[44],"which":[45,70],"seriously":[46],"reduce":[47],"people's":[48],"trust":[49],"network-based":[53],"models.":[55],"Here":[56],"we":[57],"proposed":[58,141],"a":[59,116],"novel":[60],"graph":[61,67],"network":[63,68],"named":[64],"iteratively":[65],"focused":[66],"(IFGN),":[69],"can":[71,106,146,174],"gradually":[72],"identify":[73],"key":[75],"atoms/groups":[76],"in":[77],"molecule":[79],"that":[80,139],"closely":[82],"related":[83],"predicted":[86],"properties":[87],"by":[88],"multistep":[90,101,109,142],"focus":[91,102,143],"mechanism.":[92],"At":[93],"same":[95],"time,":[96],"combination":[98],"mechanism":[103,144],"with":[104],"visualization":[105],"also":[107,145,171],"generate":[108],"interpretations,":[110],"thus":[111],"allowing":[112],"us":[113],"gain":[115],"understanding":[118],"predictive":[121],"behaviors":[122],"model.":[125,160],"For":[126,161],"all":[127],"studied":[128],"eight":[129],"datasets,":[130],"IFGN":[132],"model":[133,152],"achieved":[134],"performance,":[137],"indicating":[138],"improve":[147],"performance":[149],"obviously":[153],"besides":[154],"increasing":[155],"interpretability":[157],"built":[159],"researchers":[162],"use":[164],"conveniently,":[165],"corresponding":[167],"website":[168],"(http://graphadmet.cn/works/IFGN)":[169],"was":[170],"developed":[172],"be":[175],"used":[176],"free":[177],"charge.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4}],"updated_date":"2026-07-19T07:52:34.831488","created_date":"2025-10-10T00:00:00"}
