{"id":"https://openalex.org/W4311285804","doi":"https://doi.org/10.1093/bib/bbac531","title":"CapsNet-LDA: predicting lncRNA-disease associations using attention mechanism and capsule network based on multi-view data","display_name":"CapsNet-LDA: predicting lncRNA-disease associations using attention mechanism and capsule network based on multi-view data","publication_year":2022,"publication_date":"2022-12-12","ids":{"openalex":"https://openalex.org/W4311285804","doi":"https://doi.org/10.1093/bib/bbac531","pmid":"https://pubmed.ncbi.nlm.nih.gov/36511221"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac531","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac531","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101810353","display_name":"Zequn Zhang","orcid":"https://orcid.org/0000-0002-8158-6562"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zequn Zhang","raw_affiliation_strings":["Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066469263","display_name":"Junlin Xu","orcid":"https://orcid.org/0000-0003-1057-1504"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlin Xu","raw_affiliation_strings":["Hunan University College of Information Science and Engineering, , Changsha 410082, Hunan , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan University College of Information Science and Engineering, , Changsha 410082, Hunan , China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101603245","display_name":"Yanan Wu","orcid":"https://orcid.org/0000-0002-5611-2285"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanan Wu","raw_affiliation_strings":["Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103029518","display_name":"Niannian Liu","orcid":"https://orcid.org/0000-0002-0525-8698"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Niannian Liu","raw_affiliation_strings":["Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100703789","display_name":"Yinglong Wang","orcid":"https://orcid.org/0000-0002-4077-6212"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yinglong Wang","raw_affiliation_strings":["Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085126930","display_name":"Ying Liang","orcid":"https://orcid.org/0000-0001-9092-2110"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying Liang","raw_affiliation_strings":["Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Agricultural University College of Computer and Information Engineering, , Nanchang, 310045 Jiangxi , China","institution_ids":["https://openalex.org/I74837319"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5085126930"],"corresponding_institution_ids":["https://openalex.org/I74837319"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.5105,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.94624035,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12314","display_name":"Nuts composition and effects","score":0.9074000120162964,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7875449657440186},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.647124707698822},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6324437856674194},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6155831217765808},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5066805481910706},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.4861571490764618},{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.4680611193180084},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4212518632411957},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.34594789147377014}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7875449657440186},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.647124707698822},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6324437856674194},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6155831217765808},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5066805481910706},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.4861571490764618},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.4680611193180084},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4212518632411957},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.34594789147377014},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac531","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac531","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36511221","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36511221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G1239594693","display_name":null,"funder_award_id":"62163018","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":87,"referenced_works":["https://openalex.org/W1158178075","https://openalex.org/W1875842236","https://openalex.org/W1977751039","https://openalex.org/W1978967539","https://openalex.org/W2095705004","https://openalex.org/W2113868616","https://openalex.org/W2128983843","https://openalex.org/W2131774270","https://openalex.org/W2141222510","https://openalex.org/W2611747160","https://openalex.org/W2761249484","https://openalex.org/W2772618228","https://openalex.org/W2790455265","https://openalex.org/W2793344725","https://openalex.org/W2801501532","https://openalex.org/W2809927600","https://openalex.org/W2889646458","https://openalex.org/W2894640130","https://openalex.org/W2895679848","https://openalex.org/W2901699978","https://openalex.org/W2904828342","https://openalex.org/W2911129358","https://openalex.org/W2912626494","https://openalex.org/W2915362329","https://openalex.org/W2918193787","https://openalex.org/W2934861239","https://openalex.org/W2945027804","https://openalex.org/W2945396239","https://openalex.org/W2950235747","https://openalex.org/W2963703618","https://openalex.org/W2969761002","https://openalex.org/W2970480621","https://openalex.org/W2972582951","https://openalex.org/W2990265059","https://openalex.org/W2995808305","https://openalex.org/W3000503908","https://openalex.org/W3004807182","https://openalex.org/W3007902813","https://openalex.org/W3012155176","https://openalex.org/W3020929333","https://openalex.org/W3079222797","https://openalex.org/W3080501980","https://openalex.org/W3081960698","https://openalex.org/W3082139797","https://openalex.org/W3099929518","https://openalex.org/W3100732120","https://openalex.org/W3109860017","https://openalex.org/W3119787379","https://openalex.org/W3126823466","https://openalex.org/W3131341872","https://openalex.org/W3132609055","https://openalex.org/W3138485468","https://openalex.org/W3145754360","https://openalex.org/W3164941572","https://openalex.org/W3165780592","https://openalex.org/W3175544068","https://openalex.org/W3184231723","https://openalex.org/W3192134500","https://openalex.org/W3192779557","https://openalex.org/W3198707249","https://openalex.org/W3199044223","https://openalex.org/W3202182910","https://openalex.org/W3202624577","https://openalex.org/W3207672631","https://openalex.org/W4200030298","https://openalex.org/W4200042293","https://openalex.org/W4206379936","https://openalex.org/W4206547282","https://openalex.org/W4213205106","https://openalex.org/W4213281931","https://openalex.org/W4214499951","https://openalex.org/W4234552385","https://openalex.org/W4254751698","https://openalex.org/W4280587098","https://openalex.org/W4281717669","https://openalex.org/W4282929688","https://openalex.org/W4283703944","https://openalex.org/W4283706978","https://openalex.org/W4293514200","https://openalex.org/W6627747088","https://openalex.org/W6674330103","https://openalex.org/W6743446608","https://openalex.org/W6770364085","https://openalex.org/W6775229192","https://openalex.org/W6789629605","https://openalex.org/W6801237337","https://openalex.org/W7074129171"],"related_works":["https://openalex.org/W3013693939","https://openalex.org/W2566616303","https://openalex.org/W2159052453","https://openalex.org/W3131327266","https://openalex.org/W2734887215","https://openalex.org/W2953234277","https://openalex.org/W4297051394","https://openalex.org/W2752972570","https://openalex.org/W4386815338","https://openalex.org/W4401096132"],"abstract_inverted_index":{"Cumulative":[0],"studies":[1,194,215],"have":[2,112,134],"shown":[3],"that":[4,111,133,177,218],"many":[5],"long":[6],"non-coding":[7],"RNAs":[8],"(lncRNAs)":[9],"are":[10,93],"crucial":[11],"in":[12,172],"a":[13,46,59,97],"number":[14],"of":[15,68,86,118,130,141,198,201,206],"diseases.":[16,227],"Predicting":[17],"potential":[18],"lncRNA-disease":[19,70],"associations":[20],"(LDAs)":[21],"can":[22,220],"facilitate":[23],"disease":[24],"prevention,":[25],"diagnosis":[26],"and":[27,91,121,143,167,182],"treatment.":[28],"Therefore,":[29],"it":[30],"is":[31,79,153,212],"vital":[32],"to":[33,81,89,155,209],"develop":[34],"practical":[35],"computational":[36],"methods":[37],"for":[38,53,62,100,137,149,225],"LDA":[39,54],"prediction.":[40,55],"In":[41],"this":[42],"study,":[43],"we":[44],"propose":[45],"novel":[47,223],"predictor":[48],"named":[49],"capsule":[50],"network":[51],"(CapsNet)-LDA":[52],"CapsNet-LDA":[56,152,178,219],"first":[57],"uses":[58],"stacked":[60],"autoencoder":[61],"acquiring":[63],"the":[64,69,76,105,116,124,138,173,196,204],"informative":[65],"low-dimensional":[66],"representations":[67],"pairs":[71],"under":[72],"multiple":[73],"views,":[74],"then":[75],"attention":[77],"mechanism":[78],"leveraged":[80],"implement":[82],"an":[83,168],"adaptive":[84],"allocation":[85],"importance":[87],"weights":[88],"them,":[90],"they":[92,144],"subsequently":[94],"processed":[95],"using":[96],"CapsNet-based":[98],"architecture":[99],"predicting":[101],"LDAs.":[102],"Different":[103],"from":[104],"conventional":[106],"convolutional":[107],"neural":[108],"networks":[109],"(CNNs)":[110],"some":[113,199],"restrictions":[114],"with":[115],"usage":[117],"scalar":[119,131],"neurons":[120,128,132],"pooling":[122],"operations.":[123],"CapsNets":[125],"use":[126,145],"vector":[127],"instead":[129],"better":[135],"robustness":[136,183],"complex":[139],"combination":[140],"features":[142],"dynamic":[146],"routing":[147],"processes":[148],"updating":[150],"parameters.":[151],"superior":[154],"other":[156],"five":[157],"state-of-the-art":[158],"models":[159],"on":[160],"four":[161,164],"benchmark":[162],"datasets,":[163],"perturbed":[165],"datasets":[166],"independent":[169],"test":[170],"set":[171],"comparison":[174],"experiments,":[175],"demonstrating":[176],"has":[179],"excellent":[180],"performance":[181,211],"against":[184],"perturbation,":[185],"as":[186,188],"well":[187],"good":[189],"generalization":[190],"ability.":[191],"The":[192],"ablation":[193],"verify":[195],"effectiveness":[197],"modules":[200],"CapsNet-LDA.":[202],"Moreover,":[203],"ability":[205],"multi-view":[207],"data":[208],"improve":[210],"proven.":[213],"Case":[214],"further":[216],"indicate":[217],"accurately":[221],"predict":[222],"LDAs":[224],"specific":[226]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":11}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
