{"id":"https://openalex.org/W4309438076","doi":"https://doi.org/10.1093/bib/bbac480","title":"HN-PPISP: a hybrid network based on MLP-Mixer for protein\u2013protein interaction site prediction","display_name":"HN-PPISP: a hybrid network based on MLP-Mixer for protein\u2013protein interaction site prediction","publication_year":2022,"publication_date":"2022-11-19","ids":{"openalex":"https://openalex.org/W4309438076","doi":"https://doi.org/10.1093/bib/bbac480","pmid":"https://pubmed.ncbi.nlm.nih.gov/36403092"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac480","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac480","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102132031","display_name":"Yan Kang","orcid":null},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Kang","raw_affiliation_strings":["National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China"],"affiliations":[{"raw_affiliation_string":"National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013061825","display_name":"Yulong Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulong Xu","raw_affiliation_strings":["National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China"],"affiliations":[{"raw_affiliation_string":"National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101504175","display_name":"Xinchao Wang","orcid":"https://orcid.org/0000-0002-5224-6286"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinchao Wang","raw_affiliation_strings":["National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China"],"affiliations":[{"raw_affiliation_string":"National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022349009","display_name":"Bin Pu","orcid":"https://orcid.org/0000-0002-4959-8432"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Pu","raw_affiliation_strings":["College of Computer Science and Electronic Engineeringg, Hunan University , Changsha, 410082, P.R . China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineeringg, Hunan University , Changsha, 410082, P.R . China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034834857","display_name":"Xuekun Yang","orcid":"https://orcid.org/0000-0003-2355-7082"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuekun Yang","raw_affiliation_strings":["National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China"],"affiliations":[{"raw_affiliation_string":"National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011375608","display_name":"Yulong Rao","orcid":null},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulong Rao","raw_affiliation_strings":["National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China"],"affiliations":[{"raw_affiliation_string":"National Pilot School of Software, Yunnan University , Kunming, 650091, P.R . China","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100435599","display_name":"Jianguo Chen","orcid":"https://orcid.org/0000-0001-5009-578X"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianguo Chen","raw_affiliation_strings":["School of Software Engineering, Sun Yat-Sen University , Zhuhai, 519082, P.R . China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Sun Yat-Sen University , Zhuhai, 519082, P.R . China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5022349009"],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.8601,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.94994609,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"24","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8109666705131531},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6543867588043213},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.564026951789856},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5640133619308472},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5415859222412109},{"id":"https://openalex.org/keywords/hybrid-neural-network","display_name":"Hybrid neural network","score":0.5098732709884644},{"id":"https://openalex.org/keywords/multilayer-perceptron","display_name":"Multilayer perceptron","score":0.4730861783027649},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45299574732780457},{"id":"https://openalex.org/keywords/perceptron","display_name":"Perceptron","score":0.4517492651939392},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.44680702686309814},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42028239369392395},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07838639616966248},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.06524980068206787}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8109666705131531},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6543867588043213},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.564026951789856},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5640133619308472},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5415859222412109},{"id":"https://openalex.org/C2779990667","wikidata":"https://www.wikidata.org/wiki/Q5953266","display_name":"Hybrid neural network","level":3,"score":0.5098732709884644},{"id":"https://openalex.org/C179717631","wikidata":"https://www.wikidata.org/wiki/Q2991667","display_name":"Multilayer perceptron","level":3,"score":0.4730861783027649},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45299574732780457},{"id":"https://openalex.org/C60908668","wikidata":"https://www.wikidata.org/wiki/Q690207","display_name":"Perceptron","level":3,"score":0.4517492651939392},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.44680702686309814},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42028239369392395},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07838639616966248},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.06524980068206787},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac480","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac480","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36403092","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36403092","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1226679922","display_name":null,"funder_award_id":"61762092","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1976526581","https://openalex.org/W1990212480","https://openalex.org/W1990740967","https://openalex.org/W1994803330","https://openalex.org/W2001457899","https://openalex.org/W2009672036","https://openalex.org/W2010577059","https://openalex.org/W2012852001","https://openalex.org/W2056797853","https://openalex.org/W2078999665","https://openalex.org/W2087322782","https://openalex.org/W2088038235","https://openalex.org/W2103485392","https://openalex.org/W2115410056","https://openalex.org/W2117407746","https://openalex.org/W2118737745","https://openalex.org/W2130479394","https://openalex.org/W2141627824","https://openalex.org/W2152521138","https://openalex.org/W2155194485","https://openalex.org/W2161701113","https://openalex.org/W2172090036","https://openalex.org/W2570083522","https://openalex.org/W2907063321","https://openalex.org/W2944679105","https://openalex.org/W2955690154","https://openalex.org/W2971405760","https://openalex.org/W3080498684","https://openalex.org/W3116796646","https://openalex.org/W3123226037","https://openalex.org/W3174714560","https://openalex.org/W4200422752"],"related_works":["https://openalex.org/W2076543106","https://openalex.org/W2523437662","https://openalex.org/W89844371","https://openalex.org/W2019891950","https://openalex.org/W3192962470","https://openalex.org/W2085842814","https://openalex.org/W4286643620","https://openalex.org/W4387048144","https://openalex.org/W2492135063","https://openalex.org/W2362514456"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"of":[3],"HN-PPISP":[4],"model":[5],"is":[6],"available":[7],"at":[8],"https://github.com/ylxu05/HN-PPISP.":[9]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":12}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2022-11-27T00:00:00"}
