{"id":"https://openalex.org/W4309330418","doi":"https://doi.org/10.1093/bib/bbac479","title":"MNMDCDA: prediction of circRNA\u2013disease associations by learning mixed neighborhood information from multiple distances","display_name":"MNMDCDA: prediction of circRNA\u2013disease associations by learning mixed neighborhood information from multiple distances","publication_year":2022,"publication_date":"2022-11-01","ids":{"openalex":"https://openalex.org/W4309330418","doi":"https://doi.org/10.1093/bib/bbac479","pmid":"https://pubmed.ncbi.nlm.nih.gov/36384071"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac479","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac479","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112319480","display_name":"Yang Li","orcid":"https://orcid.org/0009-0005-0604-8501"},"institutions":[{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["School of Computer Science and Information Engineering, Hefei University of Technology , Hefei 230601 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Engineering, Hefei University of Technology , Hefei 230601 , China","institution_ids":["https://openalex.org/I16365422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064347324","display_name":"Xuegang Hu","orcid":"https://orcid.org/0000-0001-5421-6171"},"institutions":[{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xue-Gang Hu","raw_affiliation_strings":["School of Computer Science and Information Engineering, Hefei University of Technology , Hefei 230601 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Engineering, Hefei University of Technology , Hefei 230601 , China","institution_ids":["https://openalex.org/I16365422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007 , China","College of Information Science and Engineering, Zaozhuang University , Shandong 277100 , China"],"raw_orcid":"https://orcid.org/0000-0003-0184-307X","affiliations":[{"raw_affiliation_string":"Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007 , China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"College of Information Science and Engineering, Zaozhuang University , Shandong 277100 , China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100371517","display_name":"Peipei Li","orcid":"https://orcid.org/0000-0001-9142-448X"},"institutions":[{"id":"https://openalex.org/I16365422","display_name":"Hefei University of Technology","ror":"https://ror.org/02czkny70","country_code":"CN","type":"education","lineage":["https://openalex.org/I16365422"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Pei-Pei Li","raw_affiliation_strings":["School of Computer Science and Information Engineering, Hefei University of Technology , Hefei 230601 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Engineering, Hefei University of Technology , Hefei 230601 , China","institution_ids":["https://openalex.org/I16365422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007 , China","School of Computer Science, Northwestern Polytechnical University , Xi\u2019an Shaanxi 710129 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007 , China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an Shaanxi 710129 , China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5019805735","https://openalex.org/A5100371517","https://openalex.org/A5100436059"],"corresponding_institution_ids":["https://openalex.org/I16365422","https://openalex.org/I17145004","https://openalex.org/I4210159676","https://openalex.org/I4210165264"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.427,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.81583996,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6572955250740051},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5781857967376709},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5407469272613525},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.51641446352005},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.504477858543396},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.49175623059272766},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44908565282821655},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.41239243745803833},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37689679861068726},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.371543824672699},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15367960929870605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15271595120429993}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6572955250740051},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5781857967376709},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5407469272613525},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.51641446352005},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.504477858543396},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.49175623059272766},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44908565282821655},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.41239243745803833},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37689679861068726},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.371543824672699},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15367960929870605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15271595120429993},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac479","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac479","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36384071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36384071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1031907543","display_name":null,"funder_award_id":"61976077","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1128271767","display_name":null,"funder_award_id":"62120106008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7886396888","display_name":null,"funder_award_id":"62076085","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7911954467","display_name":null,"funder_award_id":"62172355","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325428","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1981726010","https://openalex.org/W2008976996","https://openalex.org/W2029838682","https://openalex.org/W2031593782","https://openalex.org/W2058835062","https://openalex.org/W2064165694","https://openalex.org/W2095705004","https://openalex.org/W2140099276","https://openalex.org/W2141222510","https://openalex.org/W2155653793","https://openalex.org/W2165232178","https://openalex.org/W2410390867","https://openalex.org/W2622004629","https://openalex.org/W2764294957","https://openalex.org/W2790814253","https://openalex.org/W2800766678","https://openalex.org/W2807602500","https://openalex.org/W2884943532","https://openalex.org/W2898991725","https://openalex.org/W2923922207","https://openalex.org/W2944974555","https://openalex.org/W2964015378","https://openalex.org/W2980767508","https://openalex.org/W3020614442","https://openalex.org/W3025741173","https://openalex.org/W3026308742","https://openalex.org/W3094804494","https://openalex.org/W3117084002","https://openalex.org/W3138507232","https://openalex.org/W3157479389","https://openalex.org/W3170895581","https://openalex.org/W3174376470","https://openalex.org/W3179782236","https://openalex.org/W3202160788","https://openalex.org/W4210852391","https://openalex.org/W4240367950","https://openalex.org/W4286373989","https://openalex.org/W4292263641","https://openalex.org/W4294990936","https://openalex.org/W4308947196","https://openalex.org/W6631190155","https://openalex.org/W6657904589","https://openalex.org/W6674330103","https://openalex.org/W6714589344","https://openalex.org/W6726873649","https://openalex.org/W6749093140","https://openalex.org/W6840655891"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2028665553","https://openalex.org/W4230315250","https://openalex.org/W2086519370","https://openalex.org/W2087343574"],"abstract_inverted_index":{"Emerging":[0],"evidence":[1],"suggests":[2],"that":[3,202],"circular":[4],"RNA":[5],"(circRNA)":[6],"is":[7,44],"an":[8,208],"important":[9],"regulator":[10],"of":[11,14,52,89,120,142,152,177,187],"a":[12,20,58],"variety":[13],"pathological":[15],"processes":[16],"and":[17,36,47,71,80,91,94,122,156,167,216],"serves":[18],"as":[19,207],"promising":[21,221],"biomarker":[22],"for":[23,223],"many":[24],"complex":[25],"human":[26],"diseases.":[27,81,145],"Nevertheless,":[28],"there":[29],"are":[30],"relatively":[31],"few":[32],"known":[33],"circRNA-disease":[34,39,181,214],"associations,":[35],"uncovering":[37],"new":[38],"associations":[40,77,141,215],"by":[41,195],"wet-lab":[42],"methods":[43],"time":[45],"consuming":[46],"costly.":[48],"Considering":[49],"the":[50,106,125,132,171,178,184,190,219],"limitations":[51],"existing":[53],"computational":[54,210],"methods,":[55],"we":[56,83,104],"propose":[57],"novel":[59],"approach":[60],"named":[61],"MNMDCDA,":[62],"which":[63],"combines":[64],"high-order":[65,107,116],"graph":[66],"convolutional":[67],"networks":[68,74],"(high-order":[69],"GCNs)":[70],"deep":[72,133],"neural":[73,134],"to":[75,97,110,139,212],"infer":[76],"between":[78],"circRNAs":[79,143],"Firstly,":[82],"computed":[84],"different":[85],"biological":[86,224],"attribute":[87],"information":[88,119],"circRNA":[90,121],"disease":[92,123],"separately":[93],"used":[95,105,206],"them":[96],"construct":[98],"multiple":[99],"multi-source":[100,127],"similarity":[101,128],"networks.":[102],"Then,":[103],"GCN":[108],"algorithm":[109],"learn":[111],"feature":[112],"embedding":[113],"representations":[114],"with":[115,144,183],"mixed":[117],"neighborhood":[118],"from":[124],"constructed":[126],"networks,":[129],"respectively.":[130],"Finally,":[131],"network":[135],"classifier":[136],"was":[137],"implemented":[138],"predict":[140,213],"The":[146],"MNMDCDA":[147,188,203],"model":[148],"obtained":[149],"AUC":[150],"scores":[151,186],"95.16%,":[153],"94.53%,":[154],"89.80%":[155],"91.83%":[157],"on":[158],"four":[159],"benchmark":[160],"datasets,":[161],"i.e.,":[162],"CircR2Disease,":[163],"CircAtlas":[164],"v2.0,":[165],"Circ2Disease":[166],"CircRNADisease,":[168],"respectively,":[169],"using":[170],"5-fold":[172],"cross-validation":[173],"approach.":[174],"Furthermore,":[175],"25":[176],"top":[179],"30":[180],"pairs":[182],"best":[185],"in":[189],"case":[191],"study":[192],"were":[193],"validated":[194],"recent":[196],"literature.":[197],"Numerous":[198],"experimental":[199],"results":[200],"indicate":[201],"can":[204,217],"be":[205],"effective":[209],"tool":[211],"provide":[218],"most":[220],"candidates":[222],"experiments.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2025-10-10T00:00:00"}
