{"id":"https://openalex.org/W4307179617","doi":"https://doi.org/10.1093/bib/bbac472","title":"Computational model for ncRNA research","display_name":"Computational model for ncRNA research","publication_year":2022,"publication_date":"2022-10-21","ids":{"openalex":"https://openalex.org/W4307179617","doi":"https://doi.org/10.1093/bib/bbac472","pmid":"https://pubmed.ncbi.nlm.nih.gov/36274235"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac472","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac472","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100371773","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9297-7174"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["China University of Mining and Technology Artificial Intelligence Research Institute, , Xuzhou, 221116 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China University of Mining and Technology Artificial Intelligence Research Institute, , Xuzhou, 221116 , China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100744865","display_name":"Huang Li","orcid":"https://orcid.org/0000-0003-4669-3466"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Huang","raw_affiliation_strings":["Tsinghua University The Future Laboratory, , Beijing, 100084 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tsinghua University The Future Laboratory, , Beijing, 100084 , China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100371773"],"corresponding_institution_ids":["https://openalex.org/I25757504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.7078,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.85483613,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.7614208459854126},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7129919528961182},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6715168356895447},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6114659905433655},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5850409269332886},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.5723953247070312},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.5152895450592041},{"id":"https://openalex.org/keywords/caenorhabditis","display_name":"Caenorhabditis","score":0.5028740763664246},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4912640452384949},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4591182768344879},{"id":"https://openalex.org/keywords/piwi-interacting-rna","display_name":"Piwi-interacting RNA","score":0.45781412720680237},{"id":"https://openalex.org/keywords/small-nucleolar-rna","display_name":"Small nucleolar RNA","score":0.45301467180252075},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.43477603793144226},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.34379082918167114}],"concepts":[{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.7614208459854126},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7129919528961182},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6715168356895447},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6114659905433655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5850409269332886},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.5723953247070312},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.5152895450592041},{"id":"https://openalex.org/C2776496032","wikidata":"https://www.wikidata.org/wiki/Q1904768","display_name":"Caenorhabditis","level":4,"score":0.5028740763664246},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4912640452384949},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4591182768344879},{"id":"https://openalex.org/C147724379","wikidata":"https://www.wikidata.org/wiki/Q2367421","display_name":"Piwi-interacting RNA","level":5,"score":0.45781412720680237},{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.45301467180252075},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.43477603793144226},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.34379082918167114}],"mesh":[{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac472","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac472","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36274235","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36274235","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3220252743","display_name":"\u57fa\u4e8e\u56fe\u4e0e\u7ec4\u5408\u4f18\u5316\u7684\u751f\u7269\u6570\u636e\u548c\u7f51\u7edc\u6570\u636e\u6316\u6398\u7b97\u6cd5\u7814\u7a76","funder_award_id":"11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G579333840","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u836f\u7269\u54cd\u5e94\u548c\u836f\u7269\u76f8\u5173\u975e\u7f16\u7801RNA\u9776\u70b9\u9884\u6d4b\u7814\u7a76","funder_award_id":"61972399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":71,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1542426682","https://openalex.org/W1866220599","https://openalex.org/W1972353480","https://openalex.org/W1975847255","https://openalex.org/W1978967539","https://openalex.org/W1994645662","https://openalex.org/W2008945738","https://openalex.org/W2030794182","https://openalex.org/W2032183472","https://openalex.org/W2039630974","https://openalex.org/W2063040470","https://openalex.org/W2068205741","https://openalex.org/W2070777085","https://openalex.org/W2075952448","https://openalex.org/W2077475358","https://openalex.org/W2087377443","https://openalex.org/W2098158603","https://openalex.org/W2099374044","https://openalex.org/W2112001233","https://openalex.org/W2118420574","https://openalex.org/W2122437248","https://openalex.org/W2124050695","https://openalex.org/W2127861583","https://openalex.org/W2129375421","https://openalex.org/W2130388134","https://openalex.org/W2146648170","https://openalex.org/W2148105495","https://openalex.org/W2172030723","https://openalex.org/W2182266118","https://openalex.org/W2331419903","https://openalex.org/W2462108616","https://openalex.org/W2502698579","https://openalex.org/W2509738156","https://openalex.org/W2510950741","https://openalex.org/W2566881606","https://openalex.org/W2606441208","https://openalex.org/W2613629789","https://openalex.org/W2765950793","https://openalex.org/W2768096340","https://openalex.org/W2774826538","https://openalex.org/W2775530093","https://openalex.org/W2789926271","https://openalex.org/W2882358619","https://openalex.org/W2888226663","https://openalex.org/W2897202882","https://openalex.org/W2899322113","https://openalex.org/W2901318957","https://openalex.org/W2903227298","https://openalex.org/W2903667419","https://openalex.org/W2907789789","https://openalex.org/W2943835743","https://openalex.org/W2946035471","https://openalex.org/W2963325685","https://openalex.org/W2982780080","https://openalex.org/W3025373576","https://openalex.org/W3092533209","https://openalex.org/W3095979265","https://openalex.org/W3101505571","https://openalex.org/W3112047397","https://openalex.org/W3115880421","https://openalex.org/W3122576841","https://openalex.org/W3124607099","https://openalex.org/W3180578233","https://openalex.org/W3212684988","https://openalex.org/W4200110750","https://openalex.org/W4289761856","https://openalex.org/W6649161440","https://openalex.org/W6679406740","https://openalex.org/W6718962110","https://openalex.org/W6753146606"],"related_works":["https://openalex.org/W2547129954","https://openalex.org/W3028919671","https://openalex.org/W2095206021","https://openalex.org/W3144341322","https://openalex.org/W2158875805","https://openalex.org/W2890134923","https://openalex.org/W2145052031","https://openalex.org/W4323652392","https://openalex.org/W4317612483","https://openalex.org/W2157376556"],"abstract_inverted_index":{"The":[0],"explosion":[1],"of":[2,18],"research":[3,160],"on":[4,117],"non-coding":[5,63],"RNAs":[6,21,131,134,154],"(ncRNAs)":[7],"in":[8,58,67,80],"the":[9,15,123,137],"past":[10],"few":[11],"decades":[12],"has":[13],"transformed":[14],"original":[16],"notion":[17],"regarding":[19],"such":[20,82],"as":[22,83],"\u2018transcriptional":[23],"noise\u2019":[24],"[1,":[25],"2]":[26],"before":[27],"1980s":[28],"to":[29,53,73,94],"gene":[30],"expression":[31],"regulators":[32],"at":[33],"transcriptional,":[34],"RNA":[35],"processing":[36],"and":[37,78,107,119,132,152],"translational":[38],"levels":[39],"[3\u20136].":[40],"It":[41],"is":[42],"evident":[43],"from":[44,70],"PubMed":[45],"that":[46],"each":[47],"week":[48],"new":[49],"studies":[50],"are":[51],"published":[52],"reveal":[54],"altered":[55],"ncRNA":[56],"expressions":[57],"diseases":[59],"or":[60],"discover":[61],"novel":[62],"transcripts":[64],"[7].":[65],"Abundant":[66],"eukaryotes":[68],"ranging":[69],"Homo":[71],"sapiens":[72],"Caenorhabditis":[74],"elegans":[75],"[8,":[76],"9]":[77],"persistent":[79],"prokaryotes":[81],"bacteria":[84],"[10,":[85],"11],":[86],"ncRNAs":[87,100,109],"fall":[88],"into":[89,129,142],"two":[90],"main":[91],"classes":[92],"according":[93],"transcript":[95],"length":[96,103,112],"[12,":[97],"13]:":[98],"long":[99],"(lncRNAs,":[101],"with":[102,111],">":[104],"200":[105,114],"bp)":[106],"small":[108],"(sncRNAs,":[110],"<":[113],"bp).":[115],"Based":[116],"conformation":[118],"cellular":[120],"function":[121],"[14\u201317],":[122],"former":[124],"can":[125,139],"be":[126,140],"further":[127],"divided":[128],"linear":[130],"circular":[133],"(circRNAs),":[135],"whereas":[136],"latter":[138],"grouped":[141],"more":[143],"than":[144],"a":[145],"dozen":[146],"subclasses,":[147],"among":[148],"which":[149],"microRNAs":[150],"(miRNAs)":[151],"piwi-interacting":[153],"(piRNAs)":[155],"have":[156],"recently":[157],"attracted":[158],"considerable":[159],"attention.":[161]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
