{"id":"https://openalex.org/W4307496915","doi":"https://doi.org/10.1093/bib/bbac460","title":"CysModDB: a comprehensive platform with the integration of manually curated resources and analysis tools for cysteine posttranslational modifications","display_name":"CysModDB: a comprehensive platform with the integration of manually curated resources and analysis tools for cysteine posttranslational modifications","publication_year":2022,"publication_date":"2022-10-27","ids":{"openalex":"https://openalex.org/W4307496915","doi":"https://doi.org/10.1093/bib/bbac460","pmid":"https://pubmed.ncbi.nlm.nih.gov/36305460"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac460","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac460/47144078/bbac460.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac460/47144078/bbac460.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056481546","display_name":"Yanzheng Meng","orcid":"https://orcid.org/0000-0002-1357-9635"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanzheng Meng","raw_affiliation_strings":["Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences , Qingdao, China","School of Basic Medicine, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences , Qingdao, China","institution_ids":[]},{"raw_affiliation_string":"School of Basic Medicine, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053770895","display_name":"Lin Zhang","orcid":"https://orcid.org/0000-0003-3902-6083"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]},{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University , Qingdao, China","School of Basic Medicine, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I143413998"]},{"raw_affiliation_string":"School of Basic Medicine, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074573678","display_name":"Laizhi Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]},{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Laizhi Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University , Qingdao, China","School of Basic Medicine, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I143413998"]},{"raw_affiliation_string":"School of Basic Medicine, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100420906","display_name":"Ziyu Wang","orcid":"https://orcid.org/0000-0001-6138-6566"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziyu Wang","raw_affiliation_strings":["School of Basic Medicine, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medicine, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059793346","display_name":"Xuanwen Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuanwen Wang","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I143413998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100751942","display_name":"Chan Li","orcid":"https://orcid.org/0000-0003-3404-889X"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chan Li","raw_affiliation_strings":["School of Basic Medicine, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medicine, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402081","display_name":"Yu Chen","orcid":"https://orcid.org/0000-0002-9661-3914"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Chen","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I143413998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084270494","display_name":"Shipeng Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shipeng Shang","raw_affiliation_strings":["School of Basic Medicine, Qingdao University , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"School of Basic Medicine, Qingdao University , Qingdao, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100440377","display_name":"Lei Li","orcid":"https://orcid.org/0000-0003-0266-8939"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Lei Li","raw_affiliation_strings":["Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences , Qingdao, China"],"affiliations":[{"raw_affiliation_string":"Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences , Qingdao, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5084270494","https://openalex.org/A5100440377"],"corresponding_institution_ids":["https://openalex.org/I108688024"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.6734,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.86350409,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cysteine","display_name":"Cysteine","score":0.6692337393760681},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6313128471374512},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.508136510848999},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.324131578207016},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.24016723036766052},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1792936623096466},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16108772158622742}],"concepts":[{"id":"https://openalex.org/C2779201268","wikidata":"https://www.wikidata.org/wiki/Q186474","display_name":"Cysteine","level":3,"score":0.6692337393760681},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6313128471374512},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.508136510848999},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.324131578207016},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.24016723036766052},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1792936623096466},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16108772158622742},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003545","descriptor_name":"Cysteine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac460","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac460/47144078/bbac460.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36305460","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36305460","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9677505","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9677505","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac460","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac460/47144078/bbac460.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G46939559","display_name":null,"funder_award_id":"201106","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6383537973","display_name":null,"funder_award_id":"31770821","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7426206236","display_name":null,"funder_award_id":"32071430","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307496915.pdf","grobid_xml":"https://content.openalex.org/works/W4307496915.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1975006428","https://openalex.org/W1978387519","https://openalex.org/W1989277387","https://openalex.org/W2029406337","https://openalex.org/W2034512365","https://openalex.org/W2052741765","https://openalex.org/W2090179707","https://openalex.org/W2106567819","https://openalex.org/W2110598220","https://openalex.org/W2120890660","https://openalex.org/W2121585165","https://openalex.org/W2134873394","https://openalex.org/W2140047797","https://openalex.org/W2148857461","https://openalex.org/W2151014533","https://openalex.org/W2158266834","https://openalex.org/W2186822602","https://openalex.org/W2286023437","https://openalex.org/W2341232534","https://openalex.org/W2345356016","https://openalex.org/W2593184757","https://openalex.org/W2605516250","https://openalex.org/W2735370877","https://openalex.org/W2755464620","https://openalex.org/W2759742634","https://openalex.org/W2771429434","https://openalex.org/W2800620204","https://openalex.org/W2803317679","https://openalex.org/W2808751821","https://openalex.org/W2845591014","https://openalex.org/W2894836881","https://openalex.org/W2902628125","https://openalex.org/W2914298128","https://openalex.org/W2942662962","https://openalex.org/W2988751457","https://openalex.org/W2989917577","https://openalex.org/W2993463748","https://openalex.org/W3007811953","https://openalex.org/W3012978874","https://openalex.org/W3014226969","https://openalex.org/W3044686917","https://openalex.org/W3090491025","https://openalex.org/W3091108742","https://openalex.org/W3098874654","https://openalex.org/W3107527779","https://openalex.org/W3108989381","https://openalex.org/W3112376646","https://openalex.org/W3121018888","https://openalex.org/W3132857558","https://openalex.org/W3141498898","https://openalex.org/W3167718630","https://openalex.org/W3177828909","https://openalex.org/W3187882417","https://openalex.org/W3211402536","https://openalex.org/W3211795435","https://openalex.org/W3213184710","https://openalex.org/W3213853244","https://openalex.org/W4226406179","https://openalex.org/W4229049382","https://openalex.org/W4229452760","https://openalex.org/W4231254854","https://openalex.org/W6704096980","https://openalex.org/W6788668006","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2023689197","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"The":[0,155,200],"unique":[1],"chemical":[2,28],"reactivity":[3],"of":[4,20,27,32,92,140,163],"cysteine":[5,33],"residues":[6],"results":[7],"in":[8,16,186],"various":[9,59],"posttranslational":[10],"modifications":[11],"(PTMs),":[12],"which":[13,184],"are":[14,145],"implicated":[15],"regulating":[17],"a":[18,67,148,153],"range":[19],"fundamental":[21],"biological":[22],"processes.":[23],"With":[24],"the":[25,72,117,161,178,190,208,220],"advent":[26],"proteomics":[29],"technology,":[30],"thousands":[31],"PTM":[34],"(CysPTM)":[35],"sites":[36,89,128,165,176,192,206],"have":[37,47],"been":[38,48],"identified":[39],"from":[40],"multiple":[41],"species.":[42],"A":[43],"few":[44],"CysPTM-based":[45],"databases":[46,114],"developed,":[49],"but":[50],"they":[51],"mainly":[52],"focus":[53],"on":[54,170,197],"data":[55],"collection":[56],"rather":[57],"than":[58],"annotations":[60,91],"and":[61,76,95,107,129,138,152,173,181,193,204],"analytical":[62],"integration.":[63],"Here,":[64],"we":[65],"present":[66],"platform-dubbed":[68],"CysModDB,":[69],"integrated":[70,131,146,216],"with":[71,90,104,166],"comprehensive":[73],"CysPTM":[74,88,127,168,205,221],"resources":[75],"analysis":[77,132,209],"tools.":[78,210],"CysModDB":[79,213],"contains":[80],"five":[81],"parts:":[82],"(1)":[83],"70":[84],"536":[85],"experimentally":[86],"verified":[87],"sample":[93],"origin":[94],"enrichment":[96,137],"techniques,":[97],"(2)":[98],"21":[99],"654":[100],"modified":[101,164,191],"proteins":[102,203],"annotated":[103],"functional":[105,182],"regions":[106],"structure":[108],"information,":[109],"(3)":[110],"cross-references":[111],"to":[112,159,177,207,218],"external":[113],"such":[115,134],"as":[116,135],"protein-protein":[118],"interactions":[119],"database,":[120],"(4)":[121],"online":[122],"computational":[123],"tools":[124,133],"for":[125],"predicting":[126],"(5)":[130],"gene":[136],"investigation":[139],"sequence":[141],"features.":[142],"These":[143],"parts":[144],"using":[147],"customized":[149],"graphic":[150],"browser":[151,156],"Basket.":[154],"uses":[157],"graphs":[158],"represent":[160],"distribution":[162],"different":[167],"types":[169],"protein":[171,179,198],"sequences":[172],"mapping":[174],"these":[175],"structures":[180],"regions,":[183],"assists":[185],"exploring":[187],"cross-talks":[188],"between":[189],"their":[194],"potential":[195],"effect":[196],"functions.":[199],"Basket":[201],"connects":[202],"In":[211],"summary,":[212],"is":[214],"an":[215],"platform":[217],"facilitate":[219],"research,":[222],"freely":[223],"accessible":[224],"via":[225],"https://cysmoddb.bioinfogo.org/.":[226]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
