{"id":"https://openalex.org/W4307498140","doi":"https://doi.org/10.1093/bib/bbac457","title":"A new framework for drug\u2013disease association prediction combing light-gated message passing neural network and gated fusion mechanism","display_name":"A new framework for drug\u2013disease association prediction combing light-gated message passing neural network and gated fusion mechanism","publication_year":2022,"publication_date":"2022-10-27","ids":{"openalex":"https://openalex.org/W4307498140","doi":"https://doi.org/10.1093/bib/bbac457","pmid":"https://pubmed.ncbi.nlm.nih.gov/36305457"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac457","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac457","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012124066","display_name":"Bao-Min Liu","orcid":"https://orcid.org/0000-0001-9891-4115"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bao-Min Liu","raw_affiliation_strings":["School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026569643","display_name":"Ying-Lian Gao","orcid":"https://orcid.org/0000-0003-0483-5622"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying-Lian Gao","raw_affiliation_strings":["Qufu Normal University Library, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University Library, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102985837","display_name":"Dai-Jun Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dai-Jun Zhang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089434148","display_name":"Feng Zhou","orcid":"https://orcid.org/0000-0002-1813-6411"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Zhou","raw_affiliation_strings":["School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347490","display_name":"Juan Wang","orcid":"https://orcid.org/0000-0003-3934-0435"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Wang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University , Rizhao, 276826, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5026569643","https://openalex.org/A5073144090"],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.3044,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.93244626,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/message-passing","display_name":"Message passing","score":0.7841389179229736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7723373770713806},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5998475551605225},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.5650899410247803},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5547800064086914},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5348709225654602},{"id":"https://openalex.org/keywords/adjacency-matrix","display_name":"Adjacency matrix","score":0.4717227816581726},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46960386633872986},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.44697272777557373},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1992110311985016},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.1664590835571289}],"concepts":[{"id":"https://openalex.org/C854659","wikidata":"https://www.wikidata.org/wiki/Q1859284","display_name":"Message passing","level":2,"score":0.7841389179229736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7723373770713806},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5998475551605225},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.5650899410247803},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5547800064086914},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5348709225654602},{"id":"https://openalex.org/C180356752","wikidata":"https://www.wikidata.org/wiki/Q727035","display_name":"Adjacency matrix","level":3,"score":0.4717227816581726},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46960386633872986},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.44697272777557373},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1992110311985016},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.1664590835571289},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac457","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac457","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36305457","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36305457","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6600000262260437}],"awards":[{"id":"https://openalex.org/G1350247206","display_name":null,"funder_award_id":"62172254","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1659441718","display_name":null,"funder_award_id":"62172253","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W324102958","https://openalex.org/W840923845","https://openalex.org/W1583837637","https://openalex.org/W1678356000","https://openalex.org/W1689711448","https://openalex.org/W1973650088","https://openalex.org/W1975147762","https://openalex.org/W1984084871","https://openalex.org/W1987219048","https://openalex.org/W2038003980","https://openalex.org/W2113072832","https://openalex.org/W2119412782","https://openalex.org/W2134841460","https://openalex.org/W2138715795","https://openalex.org/W2154654747","https://openalex.org/W2154896031","https://openalex.org/W2229067023","https://openalex.org/W2343107734","https://openalex.org/W2346950316","https://openalex.org/W2516467211","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2790385355","https://openalex.org/W2805643613","https://openalex.org/W2809156537","https://openalex.org/W2888342366","https://openalex.org/W2899070097","https://openalex.org/W2912083425","https://openalex.org/W2960557205","https://openalex.org/W2962756421","https://openalex.org/W2966357564","https://openalex.org/W2967109100","https://openalex.org/W2982619390","https://openalex.org/W2991013750","https://openalex.org/W2991657166","https://openalex.org/W3004260451","https://openalex.org/W3005970824","https://openalex.org/W3009246021","https://openalex.org/W3045879648","https://openalex.org/W3081391674","https://openalex.org/W3082620742","https://openalex.org/W3093030756","https://openalex.org/W3093194543","https://openalex.org/W3125008742","https://openalex.org/W3157350212","https://openalex.org/W3192134500","https://openalex.org/W3193498964","https://openalex.org/W3198652264","https://openalex.org/W3199401237","https://openalex.org/W3201477029","https://openalex.org/W3208102118","https://openalex.org/W4205306822","https://openalex.org/W4206547282","https://openalex.org/W4207038304","https://openalex.org/W4221096892","https://openalex.org/W4224224956","https://openalex.org/W6680584444","https://openalex.org/W6770580982","https://openalex.org/W6801417392"],"related_works":["https://openalex.org/W2978729728","https://openalex.org/W4288966080","https://openalex.org/W2352440174","https://openalex.org/W4309440960","https://openalex.org/W2892165056","https://openalex.org/W2049983311","https://openalex.org/W2219512485","https://openalex.org/W1977633309","https://openalex.org/W2098964748","https://openalex.org/W4293665714"],"abstract_inverted_index":{"With":[0],"the":[1,6,97,101,122,134,141,145,149,156,161,165,168,196],"development":[2],"of":[3,9,55,94,110,125,164],"research":[4],"on":[5],"complex":[7],"aetiology":[8],"many":[10],"diseases,":[11],"computational":[12,32],"drug":[13],"repositioning":[14],"methodology":[15],"has":[16],"proven":[17],"to":[18,22,41,89,120,127,139,178],"be":[19],"a":[20,49,52,61,74,105,111,173],"shortcut":[21],"costly":[23],"and":[24,60,85,100,114,167],"inefficient":[25],"traditional":[26],"methods.":[27],"Therefore,":[28],"developing":[29],"more":[30],"promising":[31],"methods":[33],"is":[34,67,87,118,137,176],"indispensable":[35],"for":[36,69,183],"finding":[37],"new":[38,53],"candidate":[39],"diseases":[40],"treat":[42],"with":[43,195],"existing":[44],"drugs.":[45],"In":[46],"this":[47],"paper,":[48],"model":[50,205],"integrating":[51],"variant":[54],"message":[56,76,82],"passing":[57,77],"neural":[58,78],"network":[59,79],"novel-gated":[62],"fusion":[63,107],"mechanism":[64,108],"called":[65],"GLGMPNN":[66,190],"proposed":[68,88],"drug-disease":[70,184,210],"association":[71,102,142],"prediction.":[72],"First,":[73],"light-gated":[75],"(LGMPNN),":[80],"including":[81],"passing,":[83],"aggregation":[84],"updating,":[86],"separately":[90],"extract":[91],"multiple":[92,123,135],"pieces":[93,124],"information":[95,126,143,163],"from":[96],"similarity":[98,146,170],"networks":[99,166],"network.":[103],"Then,":[104],"gated":[106],"consisting":[109],"forget":[112,130],"gate":[113,117,131],"an":[115,180],"output":[116,157],"applied":[119],"integrate":[121,140],"extent.":[128],"The":[129,199],"calculated":[132],"by":[133,155,187],"embeddings":[136],"built":[138],"into":[144],"information.":[147,171],"Furthermore,":[148],"final":[150],"node":[151],"representations":[152],"are":[153],"controlled":[154],"gate,":[158],"which":[159],"fuses":[160],"topology":[162],"initial":[169],"Finally,":[172],"bilinear":[174],"decoder":[175],"adopted":[177],"reconstruct":[179],"adjacency":[181],"matrix":[182],"associations.":[185,211],"Evaluated":[186],"10-fold":[188],"cross-validations,":[189],"achieves":[191],"excellent":[192],"performance":[193],"compared":[194],"current":[197],"models.":[198],"following":[200],"studies":[201],"show":[202],"that":[203],"our":[204],"can":[206],"effectively":[207],"discover":[208],"novel":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":10}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
