{"id":"https://openalex.org/W4299878801","doi":"https://doi.org/10.1093/bib/bbac436","title":"Machine learning alternative to systems biology should not solely depend on data","display_name":"Machine learning alternative to systems biology should not solely depend on data","publication_year":2022,"publication_date":"2022-09-30","ids":{"openalex":"https://openalex.org/W4299878801","doi":"https://doi.org/10.1093/bib/bbac436","pmid":"https://pubmed.ncbi.nlm.nih.gov/36184188"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac436","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac436/47143761/bbac436.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac436/47143761/bbac436.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007383998","display_name":"Hock Chuan Yeo","orcid":"https://orcid.org/0000-0001-5176-8800"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hock Chuan Yeo","raw_affiliation_strings":["Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR) , Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR) , Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058501977","display_name":"Kumar Selvarajoo","orcid":"https://orcid.org/0000-0002-0314-9666"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Kumar Selvarajoo","raw_affiliation_strings":["Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR) , Singapore","School of Biological Sciences, Nanyang Technological University (NTU) , Singapore","Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (A*STAR) , Singapore, Singapore","Synthetic Biology for Clinical and Technological Innovation (SynCTI), National University of Singapore (NUS) , Singapore, Singapore"],"raw_orcid":"https://orcid.org/0000-0002-0314-9666","affiliations":[{"raw_affiliation_string":"Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR) , Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"]},{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University (NTU) , Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (A*STAR) , Singapore, Singapore","institution_ids":["https://openalex.org/I115228651"]},{"raw_affiliation_string":"Synthetic Biology for Clinical and Technological Innovation (SynCTI), National University of Singapore (NUS) , Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5058501977"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596","https://openalex.org/I172675005","https://openalex.org/I4210148498"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.4755,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.82055821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5436413288116455},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41316333413124084},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3993881344795227},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3650321960449219},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35379114747047424}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5436413288116455},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41316333413124084},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3993881344795227},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3650321960449219},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35379114747047424}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac436","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac436/47143761/bbac436.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36184188","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36184188","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9677488","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9677488","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac436","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac436/47143761/bbac436.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320696","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4299878801.pdf","grobid_xml":"https://content.openalex.org/works/W4299878801.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W79881952","https://openalex.org/W1680392829","https://openalex.org/W1978486653","https://openalex.org/W1985837106","https://openalex.org/W2068453075","https://openalex.org/W2081781433","https://openalex.org/W2089632603","https://openalex.org/W2090998806","https://openalex.org/W2096192437","https://openalex.org/W2098489069","https://openalex.org/W2115003883","https://openalex.org/W2122735222","https://openalex.org/W2161401001","https://openalex.org/W2167406577","https://openalex.org/W2293809279","https://openalex.org/W2303048226","https://openalex.org/W2539530515","https://openalex.org/W2568869761","https://openalex.org/W2603756957","https://openalex.org/W2626864980","https://openalex.org/W2762440986","https://openalex.org/W2782714865","https://openalex.org/W2786426577","https://openalex.org/W2790179710","https://openalex.org/W2806157403","https://openalex.org/W2806394571","https://openalex.org/W2897173776","https://openalex.org/W2897479593","https://openalex.org/W2912411326","https://openalex.org/W2921412988","https://openalex.org/W2943995236","https://openalex.org/W2948600471","https://openalex.org/W2951934944","https://openalex.org/W2955219525","https://openalex.org/W2966848807","https://openalex.org/W2967392952","https://openalex.org/W2969497915","https://openalex.org/W2990956831","https://openalex.org/W3002417351","https://openalex.org/W3043819423","https://openalex.org/W3088231826","https://openalex.org/W3088354555","https://openalex.org/W3091789441","https://openalex.org/W3093687066","https://openalex.org/W3099892132","https://openalex.org/W3111872101","https://openalex.org/W3113010729","https://openalex.org/W3158444381","https://openalex.org/W3200707343","https://openalex.org/W4206927419","https://openalex.org/W4220862992","https://openalex.org/W4221092895","https://openalex.org/W4286386845","https://openalex.org/W6644943889","https://openalex.org/W6682756643","https://openalex.org/W6755500989","https://openalex.org/W6766502530","https://openalex.org/W6779396910","https://openalex.org/W6780678961","https://openalex.org/W6793259180","https://openalex.org/W6807656909"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"artificial":[3],"intelligence":[4],"(AI)/machine":[5],"learning":[6],"has":[7],"emerged":[8],"as":[9],"a":[10],"plausible":[11],"alternative":[12],"to":[13,43,46],"systems":[14,65],"biology":[15],"for":[16],"the":[17,48,74,82,100,105],"elucidation":[18],"of":[19,53,104],"biological":[20],"phenomena":[21],"and":[22,50,73,78,84],"in":[23,28,57,66],"attaining":[24],"specified":[25],"design":[26],"objective":[27],"synthetic":[29],"biology.":[30,67],"Although":[31],"considered":[32],"highly":[33],"disruptive":[34],"with":[35],"numerous":[36],"notable":[37],"successes":[38],"so":[39],"far,":[40],"we":[41,98],"seek":[42],"bring":[44],"attention":[45],"both":[47],"fundamental":[49],"practical":[51],"pitfalls":[52],"their":[54,71],"usage,":[55],"especially":[56],"illuminating":[58],"emergent":[59],"behaviors":[60],"from":[61],"chaotic":[62],"or":[63,102],"stochastic":[64],"Without":[68],"deliberating":[69],"on":[70],"suitability":[72],"required":[75],"data":[76],"qualities":[77],"pre-processing":[79],"approaches":[80],"beforehand,":[81],"research":[83],"development":[85],"community":[86],"could":[87],"experience":[88],"similar":[89],"'AI":[90],"winters'":[91],"that":[92],"had":[93],"plagued":[94],"other":[95],"fields.":[96],"Instead,":[97],"anticipate":[99],"integration":[101],"combination":[103],"two":[106],"approaches,":[107],"where":[108],"appropriate,":[109],"moving":[110],"forward.":[111]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
