{"id":"https://openalex.org/W4297183296","doi":"https://doi.org/10.1093/bib/bbac407","title":"Updated review of advances in microRNAs and complex diseases: towards systematic evaluation of computational models","display_name":"Updated review of advances in microRNAs and complex diseases: towards systematic evaluation of computational models","publication_year":2022,"publication_date":"2022-09-23","ids":{"openalex":"https://openalex.org/W4297183296","doi":"https://doi.org/10.1093/bib/bbac407","pmid":"https://pubmed.ncbi.nlm.nih.gov/36151749"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac407","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100744865","display_name":"Huang Li","orcid":"https://orcid.org/0000-0003-4669-3466"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Huang","raw_affiliation_strings":["Academy of Arts and Design, Tsinghua University , Beijing, 10084, China","The Future Laboratory, Tsinghua University , Beijing, 10084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Arts and Design, Tsinghua University , Beijing, 10084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"The Future Laboratory, Tsinghua University , Beijing, 10084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100425518","display_name":"Li Zhang","orcid":"https://orcid.org/0000-0002-1617-5943"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Zhang","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100371773","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9297-7174"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["Artificial Intelligence Research Institute, China University of Mining and Technology , Xuzhou, 221116, China","School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China"],"raw_orcid":"https://orcid.org/0000-0001-9297-7174","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Institute, China University of Mining and Technology , Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100371773"],"corresponding_institution_ids":["https://openalex.org/I25757504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":8.3229,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":{"value":0.98646287,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7402671575546265},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6859034299850464},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5079832673072815},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35186851024627686},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33708077669143677},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3342256247997284},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.3252454996109009},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2878432869911194},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1390623152256012},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09215143322944641}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7402671575546265},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6859034299850464},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5079832673072815},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35186851024627686},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33708077669143677},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3342256247997284},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.3252454996109009},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2878432869911194},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1390623152256012},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09215143322944641}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac407","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac407","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36151749","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36151749","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3220252743","display_name":"\u57fa\u4e8e\u56fe\u4e0e\u7ec4\u5408\u4f18\u5316\u7684\u751f\u7269\u6570\u636e\u548c\u7f51\u7edc\u6570\u636e\u6316\u6398\u7b97\u6cd5\u7814\u7a76","funder_award_id":"11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G579333840","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u836f\u7269\u54cd\u5e94\u548c\u836f\u7269\u76f8\u5173\u975e\u7f16\u7801RNA\u9776\u70b9\u9884\u6d4b\u7814\u7a76","funder_award_id":"61972399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W1533230146","https://openalex.org/W1614298861","https://openalex.org/W1623312516","https://openalex.org/W1976526581","https://openalex.org/W2016106370","https://openalex.org/W2024046085","https://openalex.org/W2024165284","https://openalex.org/W2028988057","https://openalex.org/W2099202057","https://openalex.org/W2100761975","https://openalex.org/W2103151642","https://openalex.org/W2106029302","https://openalex.org/W2123688186","https://openalex.org/W2126619650","https://openalex.org/W2128768066","https://openalex.org/W2129158737","https://openalex.org/W2141222510","https://openalex.org/W2147800946","https://openalex.org/W2158135353","https://openalex.org/W2158698691","https://openalex.org/W2410390867","https://openalex.org/W2514173981","https://openalex.org/W2538142187","https://openalex.org/W2750900465","https://openalex.org/W2752943586","https://openalex.org/W2765950793","https://openalex.org/W2768632638","https://openalex.org/W2780777007","https://openalex.org/W2781702232","https://openalex.org/W2795540478","https://openalex.org/W2799307902","https://openalex.org/W2799341160","https://openalex.org/W2801121099","https://openalex.org/W2809363952","https://openalex.org/W2888358121","https://openalex.org/W2890728516","https://openalex.org/W2895927009","https://openalex.org/W2898440040","https://openalex.org/W2899482650","https://openalex.org/W2899728356","https://openalex.org/W2909927673","https://openalex.org/W2923922207","https://openalex.org/W2942820662","https://openalex.org/W2950834624","https://openalex.org/W2962928958","https://openalex.org/W2964015378","https://openalex.org/W2967638886","https://openalex.org/W2980767508","https://openalex.org/W2999309192","https://openalex.org/W2999336918","https://openalex.org/W3000082418","https://openalex.org/W3010217868","https://openalex.org/W3011689400","https://openalex.org/W3041236926","https://openalex.org/W3045644454","https://openalex.org/W3046022368","https://openalex.org/W3082620742","https://openalex.org/W3093996932","https://openalex.org/W3117766849","https://openalex.org/W3128646645","https://openalex.org/W3143789190","https://openalex.org/W3146565636","https://openalex.org/W3157330827","https://openalex.org/W3159261411","https://openalex.org/W3193231898","https://openalex.org/W4234552385","https://openalex.org/W4246271082","https://openalex.org/W4255156463","https://openalex.org/W6631964550","https://openalex.org/W6636510571","https://openalex.org/W6714589344","https://openalex.org/W6726873649","https://openalex.org/W6749595737","https://openalex.org/W6784406891","https://openalex.org/W6836575638"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"Currently,":[0],"there":[1],"exist":[2],"no":[3],"generally":[4],"accepted":[5],"strategies":[6],"of":[7,29,37,45,114],"evaluating":[8],"computational":[9,56],"models":[10,85],"for":[11,86],"microRNA-disease":[12],"associations":[13],"(MDAs).":[14],"Though":[15],"K-fold":[16],"cross":[17],"validations":[18],"and":[19,34,55,66,111],"case":[20],"studies":[21,54],"seem":[22],"to":[23,108],"be":[24],"must-have":[25],"procedures,":[26],"the":[27,31,35,43,69,73,93],"value":[28],"K,":[30],"evaluation":[32,100],"metrics,":[33],"choice":[36],"query":[38],"diseases":[39],"as":[40,42,49],"well":[41],"inclusion":[44],"other":[46],"procedures":[47],"(such":[48],"parameter":[50],"sensitivity":[51],"tests,":[52],"ablation":[53],"cost":[57],"reports)":[58],"are":[59],"all":[60],"determined":[61],"on":[62,68,81,92],"a":[63,78,98],"case-by-case":[64],"basis":[65],"depending":[67],"researchers'":[70],"choices.":[71],"In":[72],"current":[74],"review,":[75],"we":[76,96],"include":[77],"comprehensive":[79],"analysis":[80],"how":[82],"29":[83],"state-of-the-art":[84],"predicting":[87],"MDAs":[88],"were":[89],"evaluated.":[90],"Based":[91],"analytical":[94],"results,":[95],"recommend":[97],"feasible":[99],"workflow":[101],"that":[102],"would":[103],"suit":[104],"any":[105],"future":[106],"model":[107],"facilitate":[109],"fair":[110],"systematic":[112],"assessment":[113],"predictive":[115],"performance.":[116]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":46},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
