{"id":"https://openalex.org/W3132689447","doi":"https://doi.org/10.1093/bib/bbac404","title":"A review of biomedical datasets relating to drug discovery: a knowledge graph perspective","display_name":"A review of biomedical datasets relating to drug discovery: a knowledge graph perspective","publication_year":2022,"publication_date":"2022-09-23","ids":{"openalex":"https://openalex.org/W3132689447","doi":"https://doi.org/10.1093/bib/bbac404","mag":"3132689447","pmid":"https://pubmed.ncbi.nlm.nih.gov/36151740"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac404","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac404","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac404/47144248/bbac404.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac404/47144248/bbac404.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075279338","display_name":"Stephen Bonner","orcid":"https://orcid.org/0000-0001-6008-358X"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]},{"id":"https://openalex.org/I4210098931","display_name":"Quantitative BioSciences","ror":"https://ror.org/010brsj79","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210098931"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Stephen Bonner","raw_affiliation_strings":["AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I4210098931"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022667082","display_name":"Ian P. Barrett","orcid":"https://orcid.org/0009-0005-7164-0376"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]},{"id":"https://openalex.org/I4210098931","display_name":"Quantitative BioSciences","ror":"https://ror.org/010brsj79","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210098931"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Ian P Barrett","raw_affiliation_strings":["AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I4210098931"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100741784","display_name":"Cheng Ye","orcid":"https://orcid.org/0009-0003-1113-6990"},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]},{"id":"https://openalex.org/I4210098931","display_name":"Quantitative BioSciences","ror":"https://ror.org/010brsj79","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210098931"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Cheng Ye","raw_affiliation_strings":["AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I4210098931"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030151631","display_name":"Rowan Swiers","orcid":null},"institutions":[{"id":"https://openalex.org/I105036370","display_name":"AstraZeneca (United Kingdom)","ror":"https://ror.org/04r9x1a08","country_code":"GB","type":"company","lineage":["https://openalex.org/I105036370"]},{"id":"https://openalex.org/I4210098931","display_name":"Quantitative BioSciences","ror":"https://ror.org/010brsj79","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210098931"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Rowan Swiers","raw_affiliation_strings":["AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AstraZeneca , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology , Discovery Sciences, R&D, , Cambridge, UK","institution_ids":["https://openalex.org/I4210098931"]},{"raw_affiliation_string":"Data Sciences and Quantitative Biology, Discovery Sciences, R&D, AstraZeneca, Cambridge, UK","institution_ids":["https://openalex.org/I105036370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076975589","display_name":"Ola Engkvist","orcid":"https://orcid.org/0000-0003-4970-6461"},"institutions":[{"id":"https://openalex.org/I4210116875","display_name":"AstraZeneca (Brazil)","ror":"https://ror.org/026m9xy48","country_code":"BR","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210116875"]},{"id":"https://openalex.org/I4210165610","display_name":"Molecular Discovery (United Kingdom)","ror":"https://ror.org/0576dtf44","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210165610"]}],"countries":["BR","GB"],"is_corresponding":false,"raw_author_name":"Ola Engkvist","raw_affiliation_strings":["AstraZeneca , Discovery Sciences, R&D, , Gothenburg, Sweeden","Molecular AI , Discovery Sciences, R&D, , Gothenburg, Sweeden","Molecular AI, Discovery Sciences, R&D, AstraZeneca, Gothenburg, Sweeden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AstraZeneca , Discovery Sciences, R&D, , Gothenburg, Sweeden","institution_ids":["https://openalex.org/I4210116875"]},{"raw_affiliation_string":"Molecular AI , Discovery Sciences, R&D, , Gothenburg, Sweeden","institution_ids":["https://openalex.org/I4210165610"]},{"raw_affiliation_string":"Molecular AI, Discovery Sciences, R&D, AstraZeneca, Gothenburg, Sweeden","institution_ids":["https://openalex.org/I4210116875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026643759","display_name":"Andreas Bender","orcid":"https://orcid.org/0000-0002-6683-7546"},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andreas Bender","raw_affiliation_strings":["Centre for Molecular Informatics , Department of Chemistry, , UK","University of Cambridge , Department of Chemistry, , UK","Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Informatics , Department of Chemistry, , UK","institution_ids":["https://openalex.org/I170203145"]},{"raw_affiliation_string":"University of Cambridge , Department of Chemistry, , UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065488553","display_name":"Charles Tapley Hoyt","orcid":"https://orcid.org/0000-0003-4423-4370"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Tapley Hoyt","raw_affiliation_strings":["Laboratory of Systems Pharmacology, Harvard Medical School , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Systems Pharmacology, Harvard Medical School , USA","institution_ids":["https://openalex.org/I4210155419","https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004542284","display_name":"William L. Hamilton","orcid":"https://orcid.org/0000-0002-3330-353X"},"institutions":[{"id":"https://openalex.org/I4210164802","display_name":"Mila - Quebec Artificial Intelligence Institute","ror":"https://ror.org/05c22rx21","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210164802"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"William L Hamilton","raw_affiliation_strings":["Mila-Quebec AI Institute , Montreal, Canada","School of Computer Science, McGill University , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mila-Quebec AI Institute , Montreal, Canada","institution_ids":["https://openalex.org/I4210164802"]},{"raw_affiliation_string":"School of Computer Science, McGill University , Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5075279338"],"corresponding_institution_ids":["https://openalex.org/I105036370","https://openalex.org/I4210098931"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":14.9104,"has_fulltext":true,"cited_by_count":117,"citation_normalized_percentile":{"value":0.99299117,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7380657196044922},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.714409351348877},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6366181373596191},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6048507690429688},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5676878094673157},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5268503427505493},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5150232315063477},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4981205463409424},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.49160605669021606},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4670632779598236},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4435526430606842},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4364836513996124},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4311811327934265},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.42018991708755493},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4118385910987854},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.34423935413360596},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2708994746208191},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18694806098937988},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14907023310661316},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.14445644617080688},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.0930110514163971}],"concepts":[{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7380657196044922},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.714409351348877},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6366181373596191},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6048507690429688},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5676878094673157},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5268503427505493},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5150232315063477},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4981205463409424},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.49160605669021606},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4670632779598236},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4435526430606842},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4364836513996124},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4311811327934265},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.42018991708755493},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4118385910987854},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.34423935413360596},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2708994746208191},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18694806098937988},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14907023310661316},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.14445644617080688},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0930110514163971},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbac404","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac404","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac404/47144248/bbac404.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36151740","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36151740","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:2102.10062","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2102.10062","pdf_url":"https://arxiv.org/pdf/2102.10062","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:research.chalmers.se:532491","is_oa":false,"landing_page_url":"https://research.chalmers.se/en/publication/532491","pdf_url":null,"source":{"id":"https://openalex.org/S4306402469","display_name":"Chalmers Research (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bib/bbac404","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac404","pdf_url":"https://academic.oup.com/bib/article-pdf/23/6/bbac404/47144248/bbac404.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307770","display_name":"AstraZeneca","ror":"https://ror.org/04r9x1a08"},{"id":"https://openalex.org/F4320320273","display_name":"University of Cambridge","ror":"https://ror.org/013meh722"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3132689447.pdf","grobid_xml":"https://content.openalex.org/works/W3132689447.grobid-xml"},"referenced_works_count":206,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W205829674","https://openalex.org/W398859631","https://openalex.org/W1500036797","https://openalex.org/W1527927437","https://openalex.org/W1542026696","https://openalex.org/W1871096589","https://openalex.org/W1967105697","https://openalex.org/W1989277387","https://openalex.org/W1994127362","https://openalex.org/W2009313526","https://openalex.org/W2034537627","https://openalex.org/W2038393035","https://openalex.org/W2043274355","https://openalex.org/W2052250375","https://openalex.org/W2053039860","https://openalex.org/W2060871034","https://openalex.org/W2062533676","https://openalex.org/W2063280109","https://openalex.org/W2091729411","https://openalex.org/W2095867585","https://openalex.org/W2107580398","https://openalex.org/W2108598243","https://openalex.org/W2108798001","https://openalex.org/W2110183893","https://openalex.org/W2111078532","https://openalex.org/W2113310608","https://openalex.org/W2118822739","https://openalex.org/W2119002393","https://openalex.org/W2123060905","https://openalex.org/W2127451705","https://openalex.org/W2127795553","https://openalex.org/W2136410628","https://openalex.org/W2140445011","https://openalex.org/W2144086069","https://openalex.org/W2145578524","https://openalex.org/W2146211839","https://openalex.org/W2147018385","https://openalex.org/W2153579005","https://openalex.org/W2153624566","https://openalex.org/W2153838454","https://openalex.org/W2154139219","https://openalex.org/W2155142785","https://openalex.org/W2155723007","https://openalex.org/W2155834877","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2163922914","https://openalex.org/W2165428180","https://openalex.org/W2171437346","https://openalex.org/W2174734928","https://openalex.org/W2177317049","https://openalex.org/W2250184916","https://openalex.org/W2294516783","https://openalex.org/W2302501749","https://openalex.org/W2398915717","https://openalex.org/W2407247987","https://openalex.org/W2432356473","https://openalex.org/W2525035644","https://openalex.org/W2539985226","https://openalex.org/W2557530941","https://openalex.org/W2557833574","https://openalex.org/W2558366645","https://openalex.org/W2558643140","https://openalex.org/W2559588208","https://openalex.org/W2562885672","https://openalex.org/W2564084673","https://openalex.org/W2604314403","https://openalex.org/W2604823638","https://openalex.org/W2612436700","https://openalex.org/W2624431344","https://openalex.org/W2728003555","https://openalex.org/W2759136286","https://openalex.org/W2766208765","https://openalex.org/W2766482558","https://openalex.org/W2767891136","https://openalex.org/W2767914218","https://openalex.org/W2779518696","https://openalex.org/W2781816753","https://openalex.org/W2783569768","https://openalex.org/W2786016794","https://openalex.org/W2788451340","https://openalex.org/W2789091536","https://openalex.org/W2881747041","https://openalex.org/W2886155598","https://openalex.org/W2889321024","https://openalex.org/W2899728356","https://openalex.org/W2899798803","https://openalex.org/W2899915536","https://openalex.org/W2900090807","https://openalex.org/W2900569176","https://openalex.org/W2900668971","https://openalex.org/W2901303766","https://openalex.org/W2901332105","https://openalex.org/W2905267911","https://openalex.org/W2906755148","https://openalex.org/W2908414850","https://openalex.org/W2911489562","https://openalex.org/W2912564562","https://openalex.org/W2912866059","https://openalex.org/W2915554882","https://openalex.org/W2916047525","https://openalex.org/W2917858269","https://openalex.org/W2937307539","https://openalex.org/W2949311246","https://openalex.org/W2949448713","https://openalex.org/W2950277699","https://openalex.org/W2950473735","https://openalex.org/W2951364005","https://openalex.org/W2952200877","https://openalex.org/W2961798429","https://openalex.org/W2962756421","https://openalex.org/W2963041663","https://openalex.org/W2963432357","https://openalex.org/W2963460103","https://openalex.org/W2963636167","https://openalex.org/W2965857891","https://openalex.org/W2966787092","https://openalex.org/W2970771711","https://openalex.org/W2977393556","https://openalex.org/W2983166786","https://openalex.org/W2987577970","https://openalex.org/W2989619704","https://openalex.org/W2995245946","https://openalex.org/W2995738274","https://openalex.org/W2996143873","https://openalex.org/W2999471177","https://openalex.org/W2999944182","https://openalex.org/W3000043291","https://openalex.org/W3003893414","https://openalex.org/W3005970824","https://openalex.org/W3006508031","https://openalex.org/W3006936835","https://openalex.org/W3007807538","https://openalex.org/W3010021337","https://openalex.org/W3010336026","https://openalex.org/W3016218187","https://openalex.org/W3020759564","https://openalex.org/W3022051079","https://openalex.org/W3022228001","https://openalex.org/W3037161253","https://openalex.org/W3040619593","https://openalex.org/W3041042941","https://openalex.org/W3042603387","https://openalex.org/W3042885244","https://openalex.org/W3043498388","https://openalex.org/W3044799436","https://openalex.org/W3047973344","https://openalex.org/W3051688780","https://openalex.org/W3080555959","https://openalex.org/W3087257704","https://openalex.org/W3088646411","https://openalex.org/W3092119378","https://openalex.org/W3093988619","https://openalex.org/W3094062017","https://openalex.org/W3097765075","https://openalex.org/W3100078588","https://openalex.org/W3102245839","https://openalex.org/W3104097132","https://openalex.org/W3109280016","https://openalex.org/W3111643303","https://openalex.org/W3116099552","https://openalex.org/W3119851027","https://openalex.org/W3125645198","https://openalex.org/W3133537878","https://openalex.org/W3146944767","https://openalex.org/W3160021293","https://openalex.org/W3177828909","https://openalex.org/W3208785685","https://openalex.org/W4210257598","https://openalex.org/W4210702361","https://openalex.org/W4210706440","https://openalex.org/W4213060373","https://openalex.org/W4224037213","https://openalex.org/W4229527776","https://openalex.org/W4231254854","https://openalex.org/W4237335579","https://openalex.org/W4241314290","https://openalex.org/W4282973496","https://openalex.org/W4287706284","https://openalex.org/W4287867364","https://openalex.org/W4287991183","https://openalex.org/W4294170691","https://openalex.org/W4294576509","https://openalex.org/W4320800138","https://openalex.org/W6603694148","https://openalex.org/W6676058677","https://openalex.org/W6682691769","https://openalex.org/W6729114681","https://openalex.org/W6757185310","https://openalex.org/W6771625333","https://openalex.org/W6772281894","https://openalex.org/W6773850934","https://openalex.org/W6774165440","https://openalex.org/W6774344294","https://openalex.org/W6775744988","https://openalex.org/W6779085536","https://openalex.org/W6780906978","https://openalex.org/W6781958480","https://openalex.org/W6785440645","https://openalex.org/W6786921805","https://openalex.org/W6806115372","https://openalex.org/W6808370342","https://openalex.org/W6810311434","https://openalex.org/W6813094581","https://openalex.org/W6838556796"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001","https://openalex.org/W3174741986","https://openalex.org/W2943596292"],"abstract_inverted_index":{"Drug":[0],"discovery":[1,29,57,100,123,176,229],"and":[2,7,21,50,64,110,152,178,193,196,202,223],"development":[3],"is":[4],"a":[5,55,164,169],"complex":[6],"costly":[8],"process.":[9],"Machine":[10],"learning":[11,109],"approaches":[12],"are":[13,66,84,114,137,153],"being":[14],"investigated":[15],"to":[16,78,105,120,144,162],"help":[17,106],"improve":[18],"the":[19,27,121,131,145,187,200,227],"effectiveness":[20],"speed":[22],"of":[23,26,148,172,181],"multiple":[24],"stages":[25],"drug":[28,45,47,56,99,122,175,228],"pipeline.":[30],"Of":[31],"these,":[32],"those":[33],"that":[34],"use":[35,96,219],"Knowledge":[36],"Graphs":[37],"(KG)":[38],"have":[39],"promise":[40],"in":[41,97,116,220,226],"many":[42],"tasks,":[43],"including":[44,61],"repurposing,":[46],"toxicity":[48],"prediction":[49],"target":[51],"gene-disease":[52],"prioritization.":[53],"In":[54,86],"KG,":[58],"crucial":[59],"elements":[60],"genes,":[62],"diseases":[63],"drugs":[65],"represented":[67],"as":[68],"entities,":[69],"while":[70,205],"relationships":[71],"between":[72],"them":[73],"indicate":[74],"an":[75,179],"interaction.":[76],"However,":[77],"construct":[79],"high-quality":[80],"KGs,":[81],"suitable":[82,94],"data":[83,133],"required.":[85],"this":[87,214],"review,":[88],"we":[89,190],"detail":[90],"publicly":[91],"available":[92],"sources":[93],"for":[95],"constructing":[98],"focused":[101],"KGs.":[102],"We":[103,166,212],"aim":[104],"guide":[107],"machine":[108],"KG":[111],"practitioners":[112],"who":[113,126],"interested":[115],"applying":[117],"new":[118],"techniques":[119],"field,":[124],"but":[125],"may":[127],"be":[128,160],"unfamiliar":[129],"with":[130,199],"relevant":[132],"sources.":[134],"The":[135],"datasets":[136],"selected":[138,182],"via":[139],"strict":[140],"criteria,":[141],"categorized":[142],"according":[143],"primary":[146],"type":[147],"information":[149,158],"contained":[150],"within":[151],"considered":[154],"based":[155],"upon":[156],"what":[157],"could":[159],"extracted":[161],"build":[163],"KG.":[165],"then":[167],"present":[168],"comparative":[170],"analysis":[171],"existing":[173],"public":[174],"KGs":[177,218],"evaluation":[180],"motivating":[183],"case":[184],"studies":[185],"from":[186],"literature.":[188],"Additionally,":[189],"raise":[191],"numerous":[192],"unique":[194],"challenges":[195],"issues":[197],"associated":[198],"domain":[201],"its":[203],"datasets,":[204],"also":[206],"highlighting":[207],"key":[208,222],"future":[209],"research":[210],"directions.":[211],"hope":[213],"review":[215],"will":[216],"motivate":[217],"solving":[221],"emerging":[224],"questions":[225],"domain.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-02T09:04:35.204637","created_date":"2025-10-10T00:00:00"}
