{"id":"https://openalex.org/W4302761476","doi":"https://doi.org/10.1093/bib/bbac393","title":"Line graph attention networks for predicting disease-associated Piwi-interacting RNAs","display_name":"Line graph attention networks for predicting disease-associated Piwi-interacting RNAs","publication_year":2022,"publication_date":"2022-10-05","ids":{"openalex":"https://openalex.org/W4302761476","doi":"https://doi.org/10.1093/bib/bbac393","pmid":"https://pubmed.ncbi.nlm.nih.gov/36198846"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac393","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac393","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032517198","display_name":"Kai Zheng","orcid":"https://orcid.org/0000-0003-1578-1818"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Zheng","raw_affiliation_strings":["College of Information Science and Engineering, Zaozhuang University , Shandong 277100, China","Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University , Changsha, 410083, China"],"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Zaozhuang University , Shandong 277100, China","institution_ids":["https://openalex.org/I4210159676"]},{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University , Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022297444","display_name":"Xinlu Zhang","orcid":"https://orcid.org/0000-0001-7668-091X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xin-Lu Zhang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007, China","College of Information Science and Engineering, Zaozhuang University , Shandong 277100, China"],"affiliations":[{"raw_affiliation_string":"Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007, China","institution_ids":["https://openalex.org/I4210165264"]},{"raw_affiliation_string":"College of Information Science and Engineering, Zaozhuang University , Shandong 277100, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007, China"],"affiliations":[{"raw_affiliation_string":"Big Data and Intelligent Computing Research Center, Guangxi Academy of Sciences , Nanning 530007, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060443781","display_name":"Zhaohui Zhan","orcid":"https://orcid.org/0000-0003-3044-0552"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Zhao-Hui Zhan","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Kowloon, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Kowloon, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100673439","display_name":"Haoyuan Li","orcid":"https://orcid.org/0009-0005-0314-9542"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao-Yuan Li","raw_affiliation_strings":["Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University , Changsha, 410083, China"],"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, School of Computer Science and Engineering, Central South University , Changsha, 410083, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5019805735","https://openalex.org/A5100436059"],"corresponding_institution_ids":["https://openalex.org/I4210159676","https://openalex.org/I4210165264"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.9421,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.90534698,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/piwi-interacting-rna","display_name":"Piwi-interacting RNA","score":0.8198833465576172},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6357768774032593},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5189170837402344},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.47093454003334045},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4365397095680237},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3790995478630066},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3766638934612274},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36866050958633423},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3285607695579529},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21451687812805176},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.21104741096496582},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10584685206413269},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09885445237159729},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.08344519138336182}],"concepts":[{"id":"https://openalex.org/C147724379","wikidata":"https://www.wikidata.org/wiki/Q2367421","display_name":"Piwi-interacting RNA","level":5,"score":0.8198833465576172},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6357768774032593},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5189170837402344},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.47093454003334045},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4365397095680237},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3790995478630066},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3766638934612274},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36866050958633423},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3285607695579529},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21451687812805176},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.21104741096496582},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10584685206413269},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09885445237159729},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.08344519138336182},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D034741","descriptor_name":"RNA, Small Interfering","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D060565","descriptor_name":"Argonaute Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D060565","descriptor_name":"Argonaute Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D060565","descriptor_name":"Argonaute Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D060565","descriptor_name":"Argonaute Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D060565","descriptor_name":"Argonaute Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D060565","descriptor_name":"Argonaute Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac393","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac393","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36198846","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36198846","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/1","display_name":"No poverty"}],"awards":[{"id":"https://openalex.org/G3588239447","display_name":null,"funder_award_id":"61702444","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7911954467","display_name":null,"funder_award_id":"62172355","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1967087625","https://openalex.org/W1976342457","https://openalex.org/W1979815139","https://openalex.org/W1982164922","https://openalex.org/W2011832929","https://openalex.org/W2013210832","https://openalex.org/W2020441317","https://openalex.org/W2028444170","https://openalex.org/W2029838682","https://openalex.org/W2036666348","https://openalex.org/W2037108634","https://openalex.org/W2046318418","https://openalex.org/W2085880427","https://openalex.org/W2106029302","https://openalex.org/W2107286651","https://openalex.org/W2113377893","https://openalex.org/W2114298461","https://openalex.org/W2116707781","https://openalex.org/W2118420574","https://openalex.org/W2125523389","https://openalex.org/W2132102978","https://openalex.org/W2140687871","https://openalex.org/W2157663132","https://openalex.org/W2234938965","https://openalex.org/W2438457922","https://openalex.org/W2474279689","https://openalex.org/W2547150868","https://openalex.org/W2608190552","https://openalex.org/W2624968853","https://openalex.org/W2782959626","https://openalex.org/W2890017579","https://openalex.org/W2898731714","https://openalex.org/W2899436082","https://openalex.org/W2907599246","https://openalex.org/W2910471371","https://openalex.org/W2923922207","https://openalex.org/W2955033696","https://openalex.org/W2957180077","https://openalex.org/W2964951118","https://openalex.org/W2995337846","https://openalex.org/W3004779847","https://openalex.org/W3006715646","https://openalex.org/W3010821291","https://openalex.org/W3025373576","https://openalex.org/W3025741173","https://openalex.org/W3040625023","https://openalex.org/W3047118115","https://openalex.org/W3082342355","https://openalex.org/W3082883165","https://openalex.org/W3160381762","https://openalex.org/W4214819937","https://openalex.org/W4288898105","https://openalex.org/W6673407722"],"related_works":["https://openalex.org/W2158912913","https://openalex.org/W4221011377","https://openalex.org/W2027956742","https://openalex.org/W2924035798","https://openalex.org/W3192072282","https://openalex.org/W2965423738","https://openalex.org/W2796472296","https://openalex.org/W4366421230","https://openalex.org/W2013814485","https://openalex.org/W2111217101"],"abstract_inverted_index":{"PIWI":[0],"proteins":[1],"and":[2,15,18,41,51,74,150,170],"Piwi-Interacting":[3],"RNAs":[4],"(piRNAs)":[5],"are":[6,56],"commonly":[7],"detected":[8],"in":[9,13,31,61,127],"human":[10],"cancers,":[11],"especially":[12],"germline":[14],"somatic":[16],"tissues,":[17],"correlate":[19],"with":[20,130,144],"poorer":[21],"clinical":[22],"outcomes,":[23],"suggesting":[24],"that":[25,157],"they":[26],"play":[27],"a":[28,78,100],"functional":[29],"role":[30],"cancer.":[32],"As":[33],"the":[34,62,65,122,160,163],"problem":[35,79],"of":[36,53,58,67,133,162],"combinatorial":[37],"explosions":[38],"between":[39,69],"ncRNA":[40],"disease":[42,118],"exposes":[43],"gradually,":[44],"new":[45,101],"bioinformatics":[46],"methods":[47,145],"for":[48,80,176],"large-scale":[49],"identification":[50],"prioritization":[52],"potential":[54],"associations":[55],"therefore":[57],"interest.":[59],"However,":[60],"real":[63],"world,":[64],"network":[66,104,166],"interactions":[68],"molecules":[70],"is":[71],"enormously":[72],"intricate":[73],"noisy,":[75],"which":[76],"poses":[77],"efficient":[81],"graph":[82,102,107,164],"mining.":[83],"Line":[84],"graphs":[85],"can":[86,171],"extend":[87],"many":[88],"heterogeneous":[89],"networks":[90,109],"to":[91,115],"replace":[92],"dichotomous":[93],"networks.":[94],"In":[95,121],"this":[96],"study,":[97],"we":[98,112],"present":[99],"neural":[103,165],"framework,":[105],"line":[106],"attention":[108],"(LGAT).":[110],"And":[111],"apply":[113],"it":[114,138],"predict":[116],"PiRNA":[117],"association":[119],"(GAPDA).":[120],"experiment,":[123],"GAPDA":[124,158],"performs":[125],"excellently":[126],"5-fold":[128],"cross-validation":[129],"an":[131,173],"AUC":[132],"0.9038.":[134],"Not":[135],"only":[136],"that,":[137],"still":[139],"has":[140],"superior":[141],"performance":[142],"compared":[143],"based":[146],"on":[147,167],"collaborative":[148],"filtering":[149],"attribute":[151],"features.":[152],"The":[153],"experimental":[154],"results":[155],"show":[156],"ensures":[159],"prospect":[161],"such":[168],"problems":[169],"be":[172],"excellent":[174],"supplement":[175],"future":[177],"biomedical":[178],"research.":[179]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
