{"id":"https://openalex.org/W4295242280","doi":"https://doi.org/10.1093/bib/bbac380","title":"MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification","display_name":"MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4295242280","doi":"https://doi.org/10.1093/bib/bbac380","pmid":"https://pubmed.ncbi.nlm.nih.gov/36094071"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac380","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac380","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://dr.ntu.edu.sg/bitstream/10356/169673/2/MCIBox_main_Latex-final.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066867952","display_name":"Simon Zhongyuan Tian","orcid":"https://orcid.org/0000-0003-2934-4088"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Simon Zhongyuan Tian","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100404163","display_name":"Guoliang Li","orcid":"https://orcid.org/0000-0003-1601-6640"},"institutions":[{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]},{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoliang Li","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , No.1, Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , No.1 Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China","Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University, No.1, Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China,","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, No.1 Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China,"],"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , No.1, Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248","https://openalex.org/I4210157677"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , No.1 Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University, No.1, Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China,","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, No.1 Shizishan Street, Hongshan District, Wuhan, 430070, Hubei, China,","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017315241","display_name":"Duo Ning","orcid":"https://orcid.org/0009-0008-4824-1408"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Duo Ning","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064943988","display_name":"Kai Jing","orcid":null},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Jing","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040720352","display_name":"Yewen Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yewen Xu","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100397770","display_name":"Yang Yang","orcid":"https://orcid.org/0000-0003-2643-0538"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Yang","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087492673","display_name":"Melissa J. Fullwood","orcid":"https://orcid.org/0000-0003-0321-7865"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210103786","display_name":"National University Cancer Institute, Singapore","ror":"https://ror.org/025yypj46","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210103786","https://openalex.org/I4210150261"]},{"id":"https://openalex.org/I75573869","display_name":"Institute of Molecular and Cell Biology","ror":"https://ror.org/04xpsrn94","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I75573869"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Melissa J Fullwood","raw_affiliation_strings":["Cancer Science Institute of Singapore, National University of Singapore , 14 Medical Dr, 117599, Singapore","Institute of Molecular and Cell Biology, Agency for Science, Technology and Research (A*STAR) , 61 Biopolis Dr, 138673, Singapore","School of Biological Sciences, Nanyang Technological University , 60 Nanyang Dr, 637551, Singapore","School of Biological Sciences, Nanyang Technological University, 60 Nanyang Dr, 637551, Singapore,","Cancer Science Institute of Singapore, National University of Singapore, 14 Medical Dr, 117599, Singapore,"],"affiliations":[{"raw_affiliation_string":"Cancer Science Institute of Singapore, National University of Singapore , 14 Medical Dr, 117599, Singapore","institution_ids":["https://openalex.org/I4210103786"]},{"raw_affiliation_string":"Institute of Molecular and Cell Biology, Agency for Science, Technology and Research (A*STAR) , 61 Biopolis Dr, 138673, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I75573869"]},{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University , 60 Nanyang Dr, 637551, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University, 60 Nanyang Dr, 637551, Singapore,","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Cancer Science Institute of Singapore, National University of Singapore, 14 Medical Dr, 117599, Singapore,","institution_ids":["https://openalex.org/I4210103786","https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036766419","display_name":"Pengfei Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengfei Yin","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074947920","display_name":"Guangyu Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangyu Huang","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021916927","display_name":"Dariusz Plewczy\u0144ski","orcid":"https://orcid.org/0000-0002-3840-7610"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]},{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Dariusz Plewczynski","raw_affiliation_strings":["Laboratory of Bioinformatics and Computational Genomics, Faculty of Mathematics and Information Science, Warsaw University of Technology , Pl. Politechniki 1, 00-661, Warsaw, Poland","Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw , S. Banacha 2c, 00-927, Warsaw, Poland","Laboratory of Bioinformatics and Computational Genomics, Faculty of Mathematics and Information Science, Warsaw University of Technology, Pl. Politechniki 1, 00-661, Warsaw, Poland,","Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, S. Banacha 2c, 00-927, Warsaw, Poland,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Computational Genomics, Faculty of Mathematics and Information Science, Warsaw University of Technology , Pl. Politechniki 1, 00-661, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]},{"raw_affiliation_string":"Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw , S. Banacha 2c, 00-927, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Laboratory of Bioinformatics and Computational Genomics, Faculty of Mathematics and Information Science, Warsaw University of Technology, Pl. Politechniki 1, 00-661, Warsaw, Poland,","institution_ids":["https://openalex.org/I108403487"]},{"raw_affiliation_string":"Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, S. Banacha 2c, 00-927, Warsaw, Poland,","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041119515","display_name":"Jixian Zhai","orcid":"https://orcid.org/0000-0002-0217-0666"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jixian Zhai","raw_affiliation_strings":["Institute of Plant and Food Science, Southern University of Science and Technology, Southern University of Science and Technology , 1088, Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Key Laboratory of Molecular Design for Plant Cell Factory of Guangdong Higher Education Institutes, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","Institute of Plant and Food Science, Southern University of Science and Technology, Southern University of Science and Technology, 1088, Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China and"],"affiliations":[{"raw_affiliation_string":"Institute of Plant and Food Science, Southern University of Science and Technology, Southern University of Science and Technology , 1088, Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Key Laboratory of Molecular Design for Plant Cell Factory of Guangdong Higher Education Institutes, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Institute of Plant and Food Science, Southern University of Science and Technology, Southern University of Science and Technology, 1088, Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China and","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001772343","display_name":"Ziwei Dai","orcid":"https://orcid.org/0000-0002-0858-638X"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziwei Dai","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344463","display_name":"Wei Chen","orcid":"https://orcid.org/0000-0002-6857-7696"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047886547","display_name":"Meizhen Zheng","orcid":"https://orcid.org/0000-0001-5569-1812"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meizhen Zheng","raw_affiliation_strings":["Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,"],"affiliations":[{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology , 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Gene Regulation and Systems Biology, Department of Biology, School of Life Sciences, Southern University of Science and Technology, 1088 Xueyuan Rd, Nanshan District, Shenzhen, 518055, Guangdong, China,","institution_ids":["https://openalex.org/I3045169105"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5066867952"],"corresponding_institution_ids":["https://openalex.org/I3045169105"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.6075,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.64597202,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.8605977892875671},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6627800464630127},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6326754093170166},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5421714186668396},{"id":"https://openalex.org/keywords/chia-pet","display_name":"ChIA-PET","score":0.49858641624450684},{"id":"https://openalex.org/keywords/chromosome-conformation-capture","display_name":"Chromosome conformation capture","score":0.49696066975593567},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.47418126463890076},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4413056969642639},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.37917137145996094},{"id":"https://openalex.org/keywords/chromatin-remodeling","display_name":"Chromatin remodeling","score":0.34958845376968384},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32878637313842773},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27577686309814453},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.2684742510318756},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26399850845336914},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21003764867782593}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.8605977892875671},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6627800464630127},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6326754093170166},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5421714186668396},{"id":"https://openalex.org/C67258246","wikidata":"https://www.wikidata.org/wiki/Q5065897","display_name":"ChIA-PET","level":5,"score":0.49858641624450684},{"id":"https://openalex.org/C93946551","wikidata":"https://www.wikidata.org/wiki/Q5113914","display_name":"Chromosome conformation capture","level":5,"score":0.49696066975593567},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.47418126463890076},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4413056969642639},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.37917137145996094},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.34958845376968384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32878637313842773},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27577686309814453},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.2684742510318756},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26399850845336914},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21003764867782593}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac380","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac380","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36094071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36094071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:dr.ntu.edu.sg:10356/169673","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/169673","pdf_url":"https://dr.ntu.edu.sg/bitstream/10356/169673/2/MCIBox_main_Latex-final.pdf","source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"pmh:oai:dr.ntu.edu.sg:10356/169673","is_oa":true,"landing_page_url":"https://hdl.handle.net/10356/169673","pdf_url":"https://dr.ntu.edu.sg/bitstream/10356/169673/2/MCIBox_main_Latex-final.pdf","source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3034753964","display_name":null,"funder_award_id":"grant","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G3075968685","display_name":null,"funder_award_id":"2019/35/O/ST6/02484","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G384178317","display_name":null,"funder_award_id":"02008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4267363672","display_name":null,"funder_award_id":"32170644","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5588565672","display_name":null,"funder_award_id":"11144002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8161904097","display_name":null,"funder_award_id":"202008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8799024164","display_name":null,"funder_award_id":"2020/37/B/NZ2/03757","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320709","display_name":"National Research Foundation Singapore","ror":"https://ror.org/03cpyc314"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"},{"id":"https://openalex.org/F4320322637","display_name":"Politechnika Warszawska","ror":"https://ror.org/00y0xnp53"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295242280.pdf","grobid_xml":"https://content.openalex.org/works/W4295242280.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W151377110","https://openalex.org/W1915573037","https://openalex.org/W1973062929","https://openalex.org/W1985621639","https://openalex.org/W1987971958","https://openalex.org/W1999789975","https://openalex.org/W2011463791","https://openalex.org/W2018658338","https://openalex.org/W2035659472","https://openalex.org/W2068315875","https://openalex.org/W2090037139","https://openalex.org/W2094160175","https://openalex.org/W2103441770","https://openalex.org/W2110764733","https://openalex.org/W2125914984","https://openalex.org/W2142827986","https://openalex.org/W2155120241","https://openalex.org/W2158703410","https://openalex.org/W2169456326","https://openalex.org/W2195190137","https://openalex.org/W2267247087","https://openalex.org/W2493763501","https://openalex.org/W2519132385","https://openalex.org/W2526196073","https://openalex.org/W2551033818","https://openalex.org/W2567092460","https://openalex.org/W2594764564","https://openalex.org/W2596789401","https://openalex.org/W2607471016","https://openalex.org/W2740924709","https://openalex.org/W2774297138","https://openalex.org/W2778685442","https://openalex.org/W2788376770","https://openalex.org/W2795859997","https://openalex.org/W2806123558","https://openalex.org/W2888425844","https://openalex.org/W2899726877","https://openalex.org/W2902652978","https://openalex.org/W2904120442","https://openalex.org/W2911835695","https://openalex.org/W2982623903","https://openalex.org/W2994813193","https://openalex.org/W3012143780","https://openalex.org/W3042010229","https://openalex.org/W3102094077","https://openalex.org/W3105146463","https://openalex.org/W3138308628","https://openalex.org/W4225320261","https://openalex.org/W4286499647","https://openalex.org/W6640049091","https://openalex.org/W6735344533","https://openalex.org/W6736677004","https://openalex.org/W6754539065","https://openalex.org/W6757070444","https://openalex.org/W6808594905"],"related_works":["https://openalex.org/W4210345413","https://openalex.org/W2187435303","https://openalex.org/W2305116528","https://openalex.org/W2217100747","https://openalex.org/W2217363844","https://openalex.org/W2573523123","https://openalex.org/W2887293316","https://openalex.org/W2897970825","https://openalex.org/W2959820699","https://openalex.org/W2068258525"],"abstract_inverted_index":{"The":[0],"emerging":[1],"ligation-free":[2],"three-dimensional":[3],"(3D)":[4],"genome":[5,166],"mapping":[6],"technologies":[7,17],"can":[8,83],"identify":[9,106,125],"multiplex":[10,85],"chromatin":[11,25,51,68,86,95,108,156],"interactions":[12,87,157],"with":[13,65,78,133],"single-molecule":[14,67,89,107],"precision.":[15],"These":[16,129],"not":[18],"only":[19],"offer":[20],"new":[21,33],"insight":[22],"into":[23,113],"high-dimensional":[24],"organization":[26],"and":[27,38,59,98,104,139,158],"gene":[28],"regulation,":[29],"but":[30],"also":[31],"introduce":[32],"challenges":[34],"in":[35,102],"data":[36],"visualization":[37,57],"analysis.":[39],"To":[40],"overcome":[41],"these":[42],"challenges,":[43],"we":[44],"developed":[45],"MCIBox,":[46],"a":[47,56,60,118,160],"toolkit":[48],"for":[49,62,151],"multi-way":[50],"interaction":[52],"(MCI)":[53],"analysis,":[54],"including":[55],"tool":[58,150],"platform":[61],"identifying":[63],"micro-domains":[64,126,130],"clustered":[66,112],"complexes.":[69],"MCIBox":[70,116,146],"is":[71],"based":[72],"on":[73],"various":[74],"clustering":[75],"algorithms":[76],"integrated":[77],"dimensionality":[79],"reduction":[80],"methods":[81],"that":[82,110],"display":[84],"at":[88],"level,":[90],"allowing":[91],"users":[92],"to":[93,105,124],"explore":[94],"extrusion":[96],"patterns":[97],"super-enhancers":[99],"regulation":[100],"modes":[101],"transcription,":[103],"complexes":[109],"are":[111],"micro-domains.":[114],"Furthermore,":[115],"incorporates":[117],"two-dimensional":[119],"kernel":[120],"density":[121],"estimation":[122],"algorithm":[123],"boundaries":[127],"automatically.":[128],"were":[131],"stratified":[132],"distinctive":[134],"signatures":[135],"of":[136,154,164],"transcription":[137],"activity":[138],"contained":[140],"different":[141],"cell-cycle-associated":[142],"genes.":[143],"Taken":[144],"together,":[145],"represents":[147],"an":[148],"invaluable":[149],"the":[152],"study":[153],"multiple":[155],"inaugurates":[159],"previously":[161],"unappreciated":[162],"view":[163],"3D":[165],"structure.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
