{"id":"https://openalex.org/W4295717668","doi":"https://doi.org/10.1093/bib/bbac377","title":"Self-supervised contrastive learning for integrative single cell RNA-seq data analysis","display_name":"Self-supervised contrastive learning for integrative single cell RNA-seq data analysis","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4295717668","doi":"https://doi.org/10.1093/bib/bbac377"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac377","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac377/45937750/bbac377.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac377/45937750/bbac377.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023056274","display_name":"Wenkai Han","orcid":"https://orcid.org/0000-0002-1433-7697"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Wenkai Han","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024928131","display_name":"Yuqi Cheng","orcid":"https://orcid.org/0000-0001-6664-419X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4387153466","display_name":"Weill Cornell Medicine","ror":"https://ror.org/02r109517","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}],"countries":["HK","US"],"is_corresponding":false,"raw_author_name":"Yuqi Cheng","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","Weill Cornell Graduate School of Medical Sciences, Weill Cornell Medicine , New York, NY, 10065, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Weill Cornell Graduate School of Medical Sciences, Weill Cornell Medicine , New York, NY, 10065, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4387153466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100742810","display_name":"Jiayang Chen","orcid":"https://orcid.org/0000-0002-0056-088X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiayang Chen","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101235963","display_name":"Huawen Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Huawen Zhong","raw_affiliation_strings":["Biological and Environmental Sciences & Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Biological and Environmental Sciences & Engineering Division (BESE), Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033140103","display_name":"Zhihang Hu","orcid":"https://orcid.org/0000-0003-4947-2140"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Zhihang Hu","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074568118","display_name":"Siyuan Chen","orcid":"https://orcid.org/0000-0002-2382-2248"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Siyuan Chen","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087040829","display_name":"Licheng Zong","orcid":"https://orcid.org/0000-0001-5418-005X"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Licheng Zong","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070734136","display_name":"Hong Liang","orcid":"https://orcid.org/0000-0002-2590-7210"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Liang Hong","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080235217","display_name":"Ting\u2010Fung Chan","orcid":"https://orcid.org/0000-0002-0489-3884"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ting-Fung Chan","raw_affiliation_strings":["School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong , Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042251906","display_name":"Irwin King","orcid":"https://orcid.org/0000-0001-8106-6447"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Irwin King","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["BioMap , Beijing, China","Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"BioMap , Beijing, China","institution_ids":[]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division (CEMSE), Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST) , Thuwal, 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100345753","display_name":"Yu Li","orcid":"https://orcid.org/0000-0002-3664-6722"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Yu Li","raw_affiliation_strings":["Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","The CUHK Shenzhen Research Institute, Hi-Tech Park , Nanshan, Shenzhen, 518057, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering (CSE), The Chinese University of Hong Kong (CUHK) , Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"The CUHK Shenzhen Research Institute, Hi-Tech Park , Nanshan, Shenzhen, 518057, China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5100345753"],"corresponding_institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.5967,"has_fulltext":true,"cited_by_count":81,"citation_normalized_percentile":{"value":0.9792474,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7547469735145569},{"id":"https://openalex.org/keywords/dropout","display_name":"Dropout (neural networks)","score":0.7117712497711182},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6451159715652466},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5647770166397095},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5450870990753174},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5148874521255493},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45487675070762634},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.4320669174194336},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4309334456920624},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3495238423347473},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.1651083528995514},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1157267689704895},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08105173707008362}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7547469735145569},{"id":"https://openalex.org/C2776145597","wikidata":"https://www.wikidata.org/wiki/Q25339462","display_name":"Dropout (neural networks)","level":2,"score":0.7117712497711182},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6451159715652466},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5647770166397095},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5450870990753174},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5148874521255493},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45487675070762634},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.4320669174194336},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4309334456920624},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3495238423347473},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1651083528995514},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1157267689704895},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08105173707008362},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac377","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac377/45937750/bbac377.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9487595","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9487595","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/681239","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/681239","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac377","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac377/45937750/bbac377.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6600000262260437}],"awards":[{"id":"https://openalex.org/G1495595508","display_name":null,"funder_award_id":"5501329","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G1825332442","display_name":null,"funder_award_id":"REI/1/5202-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2058729345","display_name":null,"funder_award_id":"FCC/1/1976-45-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2526108786","display_name":null,"funder_award_id":"REI/1/4742-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G4809109598","display_name":null,"funder_award_id":"4937026","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G5248485515","display_name":null,"funder_award_id":"5501517","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G575036185","display_name":null,"funder_award_id":"FCC/1/197","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G6709416133","display_name":null,"funder_award_id":"4937025","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G7727508569","display_name":null,"funder_award_id":"FCC/1/1976-44-01, FCC/1/1976-45-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8253667702","display_name":null,"funder_award_id":"FCC/1/1976-44-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8440638870","display_name":null,"funder_award_id":"REI/1/4742-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8848196204","display_name":null,"funder_award_id":"REI/1/4940-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320322942","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295717668.pdf","grobid_xml":"https://content.openalex.org/works/W4295717668.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W1507582389","https://openalex.org/W1631320694","https://openalex.org/W1984883254","https://openalex.org/W1988391018","https://openalex.org/W2007439698","https://openalex.org/W2023887100","https://openalex.org/W2051658465","https://openalex.org/W2069089843","https://openalex.org/W2107680358","https://openalex.org/W2111882541","https://openalex.org/W2140258573","https://openalex.org/W2146512944","https://openalex.org/W2152692691","https://openalex.org/W2193667971","https://openalex.org/W2526262591","https://openalex.org/W2598326928","https://openalex.org/W2773035279","https://openalex.org/W2783644856","https://openalex.org/W2789949350","https://openalex.org/W2794480084","https://openalex.org/W2800392236","https://openalex.org/W2805619986","https://openalex.org/W2901677030","https://openalex.org/W2907783748","https://openalex.org/W2916458303","https://openalex.org/W2924067995","https://openalex.org/W2949272108","https://openalex.org/W2950372712","https://openalex.org/W2951381561","https://openalex.org/W2951799803","https://openalex.org/W2952303649","https://openalex.org/W2953251392","https://openalex.org/W2970633838","https://openalex.org/W2984472267","https://openalex.org/W3002417351","https://openalex.org/W3009561768","https://openalex.org/W3013985547","https://openalex.org/W3021272327","https://openalex.org/W3024891450","https://openalex.org/W3033606359","https://openalex.org/W3034168389","https://openalex.org/W3036453504","https://openalex.org/W3037185429","https://openalex.org/W3042587425","https://openalex.org/W3042829909","https://openalex.org/W3047402958","https://openalex.org/W3047549677","https://openalex.org/W3048911294","https://openalex.org/W3078555423","https://openalex.org/W3090114880","https://openalex.org/W3092295864","https://openalex.org/W3092982430","https://openalex.org/W3107241734","https://openalex.org/W3111977710","https://openalex.org/W3130814454","https://openalex.org/W3132357920","https://openalex.org/W3137285774","https://openalex.org/W3138479716","https://openalex.org/W3159104720","https://openalex.org/W3163972593","https://openalex.org/W3179857518","https://openalex.org/W3185430726","https://openalex.org/W3203731429","https://openalex.org/W4200444229","https://openalex.org/W4205916264","https://openalex.org/W4207060592","https://openalex.org/W4301372783","https://openalex.org/W6774670964","https://openalex.org/W6776453328","https://openalex.org/W6777851757","https://openalex.org/W6779205450","https://openalex.org/W6780043101","https://openalex.org/W6780079326","https://openalex.org/W6780497461","https://openalex.org/W6781834539","https://openalex.org/W6783961830","https://openalex.org/W6783990618","https://openalex.org/W6795607320","https://openalex.org/W6805726455"],"related_works":["https://openalex.org/W3082178636","https://openalex.org/W2782041652","https://openalex.org/W2612657834","https://openalex.org/W2392157706","https://openalex.org/W2599192953","https://openalex.org/W1987310671","https://openalex.org/W2952088488","https://openalex.org/W1521968289","https://openalex.org/W4225691210","https://openalex.org/W4399568863"],"abstract_inverted_index":{"Abstract":[0],"We":[1],"present":[2],"a":[3,34,55,82],"novel":[4],"self-supervised":[5],"Contrastive":[6],"LEArning":[7],"framework":[8],"for":[9],"single-cell":[10],"ribonucleic":[11],"acid":[12],"(RNA)-sequencing":[13],"(CLEAR)":[14],"data":[15,32],"representation":[16,37],"and":[17,40,46,69,77],"the":[18,27,30],"downstream":[19],"analysis.":[20],"Compared":[21],"with":[22,33,86],"current":[23],"methods,":[24],"CLEAR":[25],"overcomes":[26],"heterogeneity":[28],"of":[29,58],"experimental":[31],"specifically":[35],"designed":[36],"learning":[38],"task":[39],"thus":[41],"can":[42],"handle":[43],"batch":[44,66],"effects":[45],"dropout":[47,64],"events":[48],"simultaneously.":[49],"It":[50],"achieves":[51],"superior":[52],"performance":[53],"on":[54],"broad":[56],"range":[57],"fundamental":[59],"tasks,":[60],"including":[61],"clustering,":[62],"visualization,":[63],"correction,":[65],"effect":[67],"removal,":[68],"pseudo-time":[70],"inference.":[71],"The":[72],"proposed":[73],"method":[74],"successfully":[75],"identifies":[76],"illustrates":[78],"inflammatory-related":[79],"mechanisms":[80],"in":[81],"COVID-19":[83],"disease":[84],"study":[85],"43":[87],"695":[88],"single":[89],"cells":[90],"from":[91],"peripheral":[92],"blood":[93],"mononuclear":[94],"cells.":[95]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":24},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2022-09-14T00:00:00"}
