{"id":"https://openalex.org/W4296580708","doi":"https://doi.org/10.1093/bib/bbac364","title":"Deep learning models for disease-associated circRNA prediction: a review","display_name":"Deep learning models for disease-associated circRNA prediction: a review","publication_year":2022,"publication_date":"2022-09-21","ids":{"openalex":"https://openalex.org/W4296580708","doi":"https://doi.org/10.1093/bib/bbac364","pmid":"https://pubmed.ncbi.nlm.nih.gov/36130259"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac364","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac364","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066494882","display_name":"Yaojia Chen","orcid":"https://orcid.org/0000-0003-0204-2725"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I79223203","display_name":"Guangdong Ocean University","ror":"https://ror.org/0462wa640","country_code":"CN","type":"education","lineage":["https://openalex.org/I79223203"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaojia Chen","raw_affiliation_strings":["College of Electronics and Information Engineering Guangdong Ocean University, Zhanjiang, China and the Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China"],"raw_orcid":"https://orcid.org/0000-0003-0204-2725","affiliations":[{"raw_affiliation_string":"College of Electronics and Information Engineering Guangdong Ocean University, Zhanjiang, China and the Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China","institution_ids":["https://openalex.org/I150229711","https://openalex.org/I79223203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086986678","display_name":"Jiacheng Wang","orcid":"https://orcid.org/0000-0001-8580-0493"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiacheng Wang","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China"],"raw_orcid":"https://orcid.org/0000-0001-8580-0493","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chuyu Wang","orcid":"https://orcid.org/0000-0002-2965-9920"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuyu Wang","raw_affiliation_strings":["Faculty of Computing, Harbin Institute of Technology , Harbin, China"],"raw_orcid":"https://orcid.org/0000-0002-2965-9920","affiliations":[{"raw_affiliation_string":"Faculty of Computing, Harbin Institute of Technology , Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100710464","display_name":"Mingxin Liu","orcid":"https://orcid.org/0000-0002-1383-6558"},"institutions":[{"id":"https://openalex.org/I79223203","display_name":"Guangdong Ocean University","ror":"https://ror.org/0462wa640","country_code":"CN","type":"education","lineage":["https://openalex.org/I79223203"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mingxin Liu","raw_affiliation_strings":["College of Electronics and Information Engineering, Guangdong Ocean University , Zhanjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Electronics and Information Engineering, Guangdong Ocean University , Zhanjiang, China","institution_ids":["https://openalex.org/I79223203"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Quan Zou","raw_affiliation_strings":["University of Electronic Science and Technology of China , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Electronic Science and Technology of China , China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5017426085","https://openalex.org/A5100710464"],"corresponding_institution_ids":["https://openalex.org/I150229711","https://openalex.org/I79223203"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.3874,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.96129617,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"23","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7419109344482422},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7364712953567505},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7131950259208679},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.696204662322998},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6098132729530334},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4827410578727722},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.47997260093688965},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.4608030319213867}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7419109344482422},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7364712953567505},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7131950259208679},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.696204662322998},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6098132729530334},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4827410578727722},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.47997260093688965},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.4608030319213867},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac364","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac364","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36130259","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36130259","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.5,"id":"https://metadata.un.org/sdg/10"},{"display_name":"Peace, Justice and strong institutions","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G1674180717","display_name":null,"funder_award_id":"61922020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5133105583","display_name":null,"funder_award_id":"62131004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":114,"referenced_works":["https://openalex.org/W1188421738","https://openalex.org/W1966557314","https://openalex.org/W2012833704","https://openalex.org/W2016053056","https://openalex.org/W2109480754","https://openalex.org/W2111072639","https://openalex.org/W2113868616","https://openalex.org/W2115662330","https://openalex.org/W2117812871","https://openalex.org/W2125389028","https://openalex.org/W2128049108","https://openalex.org/W2131774270","https://openalex.org/W2132940486","https://openalex.org/W2154851992","https://openalex.org/W2174483798","https://openalex.org/W2209200250","https://openalex.org/W2210080033","https://openalex.org/W2248620004","https://openalex.org/W2295598076","https://openalex.org/W2343107734","https://openalex.org/W2507445921","https://openalex.org/W2530008209","https://openalex.org/W2537429907","https://openalex.org/W2565516711","https://openalex.org/W2588757737","https://openalex.org/W2592340788","https://openalex.org/W2622489478","https://openalex.org/W2744268790","https://openalex.org/W2744320608","https://openalex.org/W2753032179","https://openalex.org/W2759279048","https://openalex.org/W2761699988","https://openalex.org/W2767593474","https://openalex.org/W2800766678","https://openalex.org/W2807602500","https://openalex.org/W2884943532","https://openalex.org/W2889334297","https://openalex.org/W2890017579","https://openalex.org/W2899915536","https://openalex.org/W2903730942","https://openalex.org/W2906953716","https://openalex.org/W2911964244","https://openalex.org/W2912017471","https://openalex.org/W2913545508","https://openalex.org/W2942409680","https://openalex.org/W2946834067","https://openalex.org/W2951739649","https://openalex.org/W2963695795","https://openalex.org/W2964015378","https://openalex.org/W2969209811","https://openalex.org/W2969715183","https://openalex.org/W2980767508","https://openalex.org/W2981242070","https://openalex.org/W2981316968","https://openalex.org/W2991743543","https://openalex.org/W2991794871","https://openalex.org/W2993347499","https://openalex.org/W2997680655","https://openalex.org/W3004538479","https://openalex.org/W3013613552","https://openalex.org/W3017559929","https://openalex.org/W3026308742","https://openalex.org/W3027920886","https://openalex.org/W3034046925","https://openalex.org/W3036319301","https://openalex.org/W3047927730","https://openalex.org/W3080501980","https://openalex.org/W3085537745","https://openalex.org/W3090491025","https://openalex.org/W3092486253","https://openalex.org/W3094881119","https://openalex.org/W3098523662","https://openalex.org/W3101284010","https://openalex.org/W3104097132","https://openalex.org/W3116906693","https://openalex.org/W3117084002","https://openalex.org/W3121554924","https://openalex.org/W3128713460","https://openalex.org/W3136042383","https://openalex.org/W3138507232","https://openalex.org/W3157315991","https://openalex.org/W3157479389","https://openalex.org/W3164648499","https://openalex.org/W3174982942","https://openalex.org/W3187582009","https://openalex.org/W3191666000","https://openalex.org/W3197001103","https://openalex.org/W3205633532","https://openalex.org/W3212148037","https://openalex.org/W4200110750","https://openalex.org/W4200192952","https://openalex.org/W4200310000","https://openalex.org/W4206566851","https://openalex.org/W4210852391","https://openalex.org/W4213138800","https://openalex.org/W4213224931","https://openalex.org/W4213270761","https://openalex.org/W4231109964","https://openalex.org/W4250367340","https://openalex.org/W4297733535","https://openalex.org/W4385245566","https://openalex.org/W6678815747","https://openalex.org/W6724876019","https://openalex.org/W6726873649","https://openalex.org/W6734397981","https://openalex.org/W6738625001","https://openalex.org/W6742181258","https://openalex.org/W6745537798","https://openalex.org/W6748799445","https://openalex.org/W6795024947","https://openalex.org/W6800011757","https://openalex.org/W6805096841","https://openalex.org/W6805197902","https://openalex.org/W6809131112"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2951187577","https://openalex.org/W2905271011","https://openalex.org/W3164948662","https://openalex.org/W3048601286","https://openalex.org/W4289536128","https://openalex.org/W2965925734","https://openalex.org/W3153597579","https://openalex.org/W4298151006"],"abstract_inverted_index":{"Emerging":[0],"evidence":[1],"indicates":[2],"that":[3],"circular":[4],"RNAs":[5],"(circRNAs)":[6],"can":[7],"provide":[8],"new":[9],"insights":[10],"and":[11,18,26,63,76,93,103,110],"potential":[12],"therapeutic":[13],"targets":[14],"for":[15,36,46,90,114],"disease":[16],"diagnosis":[17],"treatment.":[19],"However,":[20],"traditional":[21],"biological":[22],"experiments":[23],"are":[24],"expensive":[25],"time-consuming.":[27],"Recently,":[28],"deep":[29,68],"learning":[30,38],"with":[31,87],"a":[32,43],"more":[33],"powerful":[34],"ability":[35],"representation":[37],"enables":[39],"it":[40],"to":[41,61],"be":[42],"promising":[44],"technology":[45],"predicting":[47],"disease-associated":[48],"circRNAs.":[49],"In":[50,97],"this":[51],"review,":[52],"we":[53,99],"mainly":[54],"introduce":[55],"the":[56,101],"most":[57],"popular":[58],"databases":[59],"related":[60],"circRNA,":[62],"summarize":[64],"three":[65],"types":[66],"of":[67,105,108],"learning-based":[69],"circRNA-disease":[70],"associations":[71],"prediction":[72],"methods:":[73],"feature-generation-based,":[74],"type-discrimination":[75],"hybrid-based":[77],"methods.":[78],"We":[79],"further":[80],"evaluate":[81],"seven":[82],"representative":[83],"models":[84],"on":[85],"benchmark":[86],"ground":[88],"truth":[89],"both":[91],"balance":[92],"imbalance":[94],"classification":[95],"tasks.":[96],"addition,":[98],"discuss":[100],"advantages":[102],"limitations":[104],"each":[106],"type":[107],"method":[109],"highlight":[111],"suggested":[112],"applications":[113],"future":[115],"research.":[116]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
