{"id":"https://openalex.org/W4294376371","doi":"https://doi.org/10.1093/bib/bbac358","title":"Updated review of advances in microRNAs and complex diseases: taxonomy, trends and challenges of computational models","display_name":"Updated review of advances in microRNAs and complex diseases: taxonomy, trends and challenges of computational models","publication_year":2022,"publication_date":"2022-09-01","ids":{"openalex":"https://openalex.org/W4294376371","doi":"https://doi.org/10.1093/bib/bbac358","pmid":"https://pubmed.ncbi.nlm.nih.gov/36056743"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac358","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac358","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100744865","display_name":"Huang Li","orcid":"https://orcid.org/0000-0003-4669-3466"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Huang","raw_affiliation_strings":["Academy of Arts and Design, Tsinghua University , Beijing, 10084, China","The Future Laboratory, Tsinghua University , Beijing, 10084, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Arts and Design, Tsinghua University , Beijing, 10084, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"The Future Laboratory, Tsinghua University , Beijing, 10084, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100425518","display_name":"Li Zhang","orcid":"https://orcid.org/0000-0002-1617-5943"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Zhang","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100371773","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9297-7174"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["Artificial Intelligence Research Institute, China University of Mining and Technology , Xuzhou, 221116, China","School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China"],"raw_orcid":"https://orcid.org/0000-0001-9297-7174","affiliations":[{"raw_affiliation_string":"Artificial Intelligence Research Institute, China University of Mining and Technology , Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology , Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100371773"],"corresponding_institution_ids":["https://openalex.org/I25757504"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":9.9202,"has_fulltext":false,"cited_by_count":120,"citation_normalized_percentile":{"value":0.98951244,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7448102235794067},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.6129299998283386},{"id":"https://openalex.org/keywords/strengths-and-weaknesses","display_name":"Strengths and weaknesses","score":0.58710116147995},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.557680606842041},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4602472186088562},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45375606417655945},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44648152589797974},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42579829692840576},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36644071340560913}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7448102235794067},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.6129299998283386},{"id":"https://openalex.org/C63882131","wikidata":"https://www.wikidata.org/wiki/Q17122954","display_name":"Strengths and weaknesses","level":2,"score":0.58710116147995},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.557680606842041},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4602472186088562},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45375606417655945},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44648152589797974},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42579829692840576},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36644071340560913},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac358","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac358","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36056743","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36056743","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G579333840","display_name":"\u57fa\u4e8e\u591a\u6e90\u6570\u636e\u878d\u5408\u7684\u836f\u7269\u54cd\u5e94\u548c\u836f\u7269\u76f8\u5173\u975e\u7f16\u7801RNA\u9776\u70b9\u9884\u6d4b\u7814\u7a76","funder_award_id":"61972399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":189,"referenced_works":["https://openalex.org/W44815768","https://openalex.org/W188608978","https://openalex.org/W254111596","https://openalex.org/W1188421738","https://openalex.org/W1436642346","https://openalex.org/W1498436455","https://openalex.org/W1546155242","https://openalex.org/W1583837637","https://openalex.org/W1614298861","https://openalex.org/W1979033523","https://openalex.org/W1979104937","https://openalex.org/W1979148915","https://openalex.org/W1985439907","https://openalex.org/W1995082021","https://openalex.org/W1996415723","https://openalex.org/W1998635907","https://openalex.org/W2001508508","https://openalex.org/W2010355969","https://openalex.org/W2016106370","https://openalex.org/W2016381774","https://openalex.org/W2016648380","https://openalex.org/W2018189081","https://openalex.org/W2024046085","https://openalex.org/W2024165284","https://openalex.org/W2026417691","https://openalex.org/W2047967134","https://openalex.org/W2050148284","https://openalex.org/W2053101950","https://openalex.org/W2069569950","https://openalex.org/W2074231493","https://openalex.org/W2077327925","https://openalex.org/W2081863860","https://openalex.org/W2082565035","https://openalex.org/W2084362125","https://openalex.org/W2098006457","https://openalex.org/W2099534828","https://openalex.org/W2100495367","https://openalex.org/W2100761975","https://openalex.org/W2100805904","https://openalex.org/W2103151642","https://openalex.org/W2105549148","https://openalex.org/W2105884433","https://openalex.org/W2106029302","https://openalex.org/W2108119513","https://openalex.org/W2108753466","https://openalex.org/W2109120098","https://openalex.org/W2115629999","https://openalex.org/W2116542188","https://openalex.org/W2122863289","https://openalex.org/W2123402141","https://openalex.org/W2123688186","https://openalex.org/W2126619650","https://openalex.org/W2128049108","https://openalex.org/W2129158737","https://openalex.org/W2132694427","https://openalex.org/W2134118500","https://openalex.org/W2137031237","https://openalex.org/W2137734450","https://openalex.org/W2141222510","https://openalex.org/W2144719328","https://openalex.org/W2147800946","https://openalex.org/W2155259243","https://openalex.org/W2155566653","https://openalex.org/W2155806188","https://openalex.org/W2158135353","https://openalex.org/W2168103112","https://openalex.org/W2168793364","https://openalex.org/W2174734928","https://openalex.org/W2210577735","https://openalex.org/W2244718251","https://openalex.org/W2259538443","https://openalex.org/W2295598076","https://openalex.org/W2295652899","https://openalex.org/W2316564661","https://openalex.org/W2410390867","https://openalex.org/W2462108616","https://openalex.org/W2502949459","https://openalex.org/W2509430209","https://openalex.org/W2537679995","https://openalex.org/W2538142187","https://openalex.org/W2560222628","https://openalex.org/W2564084673","https://openalex.org/W2570556913","https://openalex.org/W2579434750","https://openalex.org/W2603552761","https://openalex.org/W2608690367","https://openalex.org/W2744720080","https://openalex.org/W2750900465","https://openalex.org/W2752943586","https://openalex.org/W2757108520","https://openalex.org/W2765950793","https://openalex.org/W2766992392","https://openalex.org/W2780777007","https://openalex.org/W2781702232","https://openalex.org/W2795540478","https://openalex.org/W2799307902","https://openalex.org/W2801121099","https://openalex.org/W2808799430","https://openalex.org/W2809363952","https://openalex.org/W2809893308","https://openalex.org/W2811212358","https://openalex.org/W2888358121","https://openalex.org/W2889321024","https://openalex.org/W2890728516","https://openalex.org/W2892023480","https://openalex.org/W2895927009","https://openalex.org/W2896829849","https://openalex.org/W2899728356","https://openalex.org/W2909927673","https://openalex.org/W2919115771","https://openalex.org/W2921690682","https://openalex.org/W2923922207","https://openalex.org/W2929491112","https://openalex.org/W2942820662","https://openalex.org/W2945531628","https://openalex.org/W2950834624","https://openalex.org/W2951934944","https://openalex.org/W2952477354","https://openalex.org/W2962928958","https://openalex.org/W2964126306","https://openalex.org/W2967638886","https://openalex.org/W2980767508","https://openalex.org/W2985166039","https://openalex.org/W2985331920","https://openalex.org/W2991226708","https://openalex.org/W2991281491","https://openalex.org/W2999310095","https://openalex.org/W2999336918","https://openalex.org/W3000082418","https://openalex.org/W3004621088","https://openalex.org/W3010217868","https://openalex.org/W3010560689","https://openalex.org/W3010805239","https://openalex.org/W3011689400","https://openalex.org/W3026640598","https://openalex.org/W3041236926","https://openalex.org/W3045644454","https://openalex.org/W3046022368","https://openalex.org/W3082620742","https://openalex.org/W3082722556","https://openalex.org/W3093996932","https://openalex.org/W3095979265","https://openalex.org/W3105270890","https://openalex.org/W3117766849","https://openalex.org/W3143789190","https://openalex.org/W3156968278","https://openalex.org/W3157330827","https://openalex.org/W3159261411","https://openalex.org/W3184294515","https://openalex.org/W3184618566","https://openalex.org/W3185479858","https://openalex.org/W3192668894","https://openalex.org/W3193231898","https://openalex.org/W3195937938","https://openalex.org/W3198578692","https://openalex.org/W3199924206","https://openalex.org/W3204140782","https://openalex.org/W3206601677","https://openalex.org/W3207238297","https://openalex.org/W4200110750","https://openalex.org/W4200329190","https://openalex.org/W4200424115","https://openalex.org/W4211248483","https://openalex.org/W4230428500","https://openalex.org/W4232478844","https://openalex.org/W4232932184","https://openalex.org/W4234552385","https://openalex.org/W4239436286","https://openalex.org/W4246271082","https://openalex.org/W4255156463","https://openalex.org/W4292363360","https://openalex.org/W4300598253","https://openalex.org/W4302544261","https://openalex.org/W6609552788","https://openalex.org/W6631190155","https://openalex.org/W6636510571","https://openalex.org/W6676253046","https://openalex.org/W6676321539","https://openalex.org/W6679756184","https://openalex.org/W6680830989","https://openalex.org/W6683305289","https://openalex.org/W6714589344","https://openalex.org/W6718962110","https://openalex.org/W6726873649","https://openalex.org/W6749595737","https://openalex.org/W6755952022","https://openalex.org/W6799372724","https://openalex.org/W6801669723","https://openalex.org/W6836575638"],"related_works":["https://openalex.org/W4295769391","https://openalex.org/W2972220648","https://openalex.org/W2332667808","https://openalex.org/W1997921863","https://openalex.org/W3112960490","https://openalex.org/W93605524","https://openalex.org/W2021145421","https://openalex.org/W821271700","https://openalex.org/W2183009720","https://openalex.org/W4250894911"],"abstract_inverted_index":{"Since":[0],"the":[1,16,45,61,91,105,115,136,148,158,166,193,202],"problem":[2],"proposed":[3,203,206],"in":[4,86,90,135,147,201],"late":[5],"2000s,":[6],"microRNA-disease":[7],"association":[8],"(MDA)":[9],"predictions":[10],"have":[11,161],"been":[12,162],"implemented":[13],"based":[14,123],"on":[15,124,176],"data":[17,22],"fusion":[18,126],"paradigm.":[19],"Integrating":[20],"diverse":[21,211],"sources":[23],"gains":[24],"a":[25,32,51,56,65,98,185],"more":[26,49,84],"comprehensive":[27],"research":[28,54,208],"perspective,":[29],"and":[30,41,113,127,174,195,205],"brings":[31],"challenge":[33],"to":[34,168,184],"algorithm":[35,59],"design":[36,81],"for":[37,74,120,213],"generating":[38],"accurate,":[39],"concise":[40],"consistent":[42],"representations":[43],"of":[44,53,93,117,139,144,187,197],"fused":[46],"data.":[47],"After":[48],"than":[50],"decade":[52],"progress,":[55],"relatively":[57],"simple":[58],"like":[60],"score":[62],"function":[63],"or":[64],"single":[66],"computation":[67],"layer":[68],"may":[69],"no":[70],"longer":[71],"be":[72,181],"sufficient":[73],"further":[75],"improving":[76],"predictive":[77],"performance.":[78,216],"Advanced":[79],"model":[80,102,125,199,215],"has":[82],"become":[83],"frequent":[85],"recent":[87],"years,":[88],"particularly":[89],"form":[92],"reasonably":[94],"combing":[95],"multiple":[96],"algorithms,":[97],"process":[99],"known":[100],"as":[101],"fusion.":[103],"In":[104],"current":[106],"review,":[107],"we":[108,156,191],"present":[109],"29":[110],"state-of-the-art":[111],"models":[112,119,179],"introduce":[114],"taxonomy":[116,131,204],"computational":[118],"MDA":[121,170],"prediction":[122,171],"non-fusion.":[128],"The":[129],"new":[130,188],"exhibits":[132],"notable":[133],"changes":[134],"algorithmic":[137],"architecture":[138],"models,":[140],"compared":[141],"with":[142],"that":[143,160],"earlier":[145],"ones":[146],"2017":[149,173],"review":[150],"by":[151],"Chen":[152],"et":[153],"al.":[154],"Moreover,":[155],"discuss":[157],"progresses":[159],"made":[163],"towards":[164],"overcoming":[165],"obstacles":[167],"effective":[169],"since":[172],"elaborated":[175],"how":[177],"future":[178,207],"can":[180],"designed":[182],"according":[183],"set":[186],"schemas.":[189],"Lastly,":[190],"analysed":[192],"strengths":[194],"weaknesses":[196],"each":[198],"category":[200],"directions":[209],"from":[210],"perspectives":[212],"enhancing":[214]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":48},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":4}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
