{"id":"https://openalex.org/W4294091332","doi":"https://doi.org/10.1093/bib/bbac345","title":"Metric learning for comparing genomic data with triplet network","display_name":"Metric learning for comparing genomic data with triplet network","publication_year":2022,"publication_date":"2022-08-31","ids":{"openalex":"https://openalex.org/W4294091332","doi":"https://doi.org/10.1093/bib/bbac345","pmid":"https://pubmed.ncbi.nlm.nih.gov/36049234"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac345","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac345","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011869476","display_name":"Zhi Ma","orcid":"https://orcid.org/0000-0002-5803-4954"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi Ma","raw_affiliation_strings":["Department of Automation, Xiamen University , China","National Institute for Data Science in Health and Medicine, Xiamen University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101935781","display_name":"Yang Young Lu","orcid":"https://orcid.org/0000-0003-1686-5917"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Yang Young Lu","raw_affiliation_strings":["Cheriton School of Computer Science, University of Waterloo , Waterloo, Ontario , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cheriton School of Computer Science, University of Waterloo , Waterloo, Ontario , Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383455","display_name":"Yiwen Wang","orcid":"https://orcid.org/0000-0003-2069-6685"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiwen Wang","raw_affiliation_strings":["Department of Automation, Xiamen University , China","Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","National Institute for Data Science in Health and Medicine, Xiamen University","Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","institution_ids":[]},{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383455","display_name":"Yiwen Wang","orcid":"https://orcid.org/0000-0003-2069-6685"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yiwen Wang","raw_affiliation_strings":["Department of Automation, Xiamen University , China","Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","National Institute for Data Science in Health and Medicine, Xiamen University","Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","institution_ids":[]},{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073124737","display_name":"Renhao Lin","orcid":"https://orcid.org/0009-0008-8286-4035"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Renhao Lin","raw_affiliation_strings":["Department of Automation, Xiamen University , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066116200","display_name":"Zizi Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Zizi Yang","raw_affiliation_strings":["Department of Automation, Xiamen University , China","Cheriton School of Computer Science, University of Waterloo , Waterloo, Ontario , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Cheriton School of Computer Science, University of Waterloo , Waterloo, Ontario , Canada","institution_ids":["https://openalex.org/I151746483"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081666408","display_name":"Fang Zhang","orcid":"https://orcid.org/0000-0001-5323-6728"},"institutions":[{"id":"https://openalex.org/I151746483","display_name":"University of Waterloo","ror":"https://ror.org/01aff2v68","country_code":"CA","type":"education","lineage":["https://openalex.org/I151746483"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Fang Zhang","raw_affiliation_strings":["Cheriton School of Computer Science, University of Waterloo , Waterloo, Ontario , Canada","National Institute for Data Science in Health and Medicine, Xiamen University","Department of Automation, Xiamen University , China","Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cheriton School of Computer Science, University of Waterloo , Waterloo, Ontario , Canada","institution_ids":["https://openalex.org/I151746483"]},{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","institution_ids":[]},{"raw_affiliation_string":"Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115695367","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0001-8766-5950"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying Wang","raw_affiliation_strings":["Department of Automation, Xiamen University , China","Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","National Institute for Data Science in Health and Medicine, Xiamen University","Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China"],"raw_orcid":"https://orcid.org/0000-0001-8766-5950","affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","institution_ids":[]},{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5115695367","display_name":"Ying Wang","orcid":"https://orcid.org/0000-0001-8766-5950"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wang","raw_affiliation_strings":["Department of Automation, Xiamen University , China","Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","National Institute for Data Science in Health and Medicine, Xiamen University","Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China"],"raw_orcid":"https://orcid.org/0000-0001-8766-5950","affiliations":[{"raw_affiliation_string":"Department of Automation, Xiamen University , China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Fujian Key Laboratory of Genetics and Breeding of Marine Organisms , Xiamen, 361100 , China","institution_ids":[]},{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Xiamen Key Laboratory of Big Data Intelligent Analysis and Decision , Xiamen, Fujian 361005 , China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100383455","https://openalex.org/A5101935781","https://openalex.org/A5115695367"],"corresponding_institution_ids":["https://openalex.org/I151746483","https://openalex.org/I191208505"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.4703,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.57728809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6795530319213867},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.6645700931549072},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6407583355903625},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5339058637619019},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47082072496414185},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47002267837524414},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4397678077220917},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.368069589138031}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6795530319213867},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.6645700931549072},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6407583355903625},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5339058637619019},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47082072496414185},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47002267837524414},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4397678077220917},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.368069589138031},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac345","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac345","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36049234","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36049234","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3519040761","display_name":null,"funder_award_id":"U1605213","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4202733115","display_name":null,"funder_award_id":"31872564","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4693843682","display_name":null,"funder_award_id":"62173282","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7512508742","display_name":null,"funder_award_id":"2018YFD0901401","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W1540596182","https://openalex.org/W1565746575","https://openalex.org/W1977556410","https://openalex.org/W2023887100","https://openalex.org/W2035754407","https://openalex.org/W2055351949","https://openalex.org/W2056568233","https://openalex.org/W2056780622","https://openalex.org/W2057215967","https://openalex.org/W2083155754","https://openalex.org/W2086291326","https://openalex.org/W2088775137","https://openalex.org/W2089468765","https://openalex.org/W2092493898","https://openalex.org/W2100799972","https://openalex.org/W2112865076","https://openalex.org/W2116895571","https://openalex.org/W2120205807","https://openalex.org/W2123006317","https://openalex.org/W2162833336","https://openalex.org/W2173780949","https://openalex.org/W2187089797","https://openalex.org/W2307567449","https://openalex.org/W2337508844","https://openalex.org/W2341364667","https://openalex.org/W2345234399","https://openalex.org/W2498957525","https://openalex.org/W2510620627","https://openalex.org/W2525579820","https://openalex.org/W2611554670","https://openalex.org/W2624135745","https://openalex.org/W2734297307","https://openalex.org/W2761430568","https://openalex.org/W2786672974","https://openalex.org/W2901120080","https://openalex.org/W2901677030","https://openalex.org/W2903674301","https://openalex.org/W2907783748","https://openalex.org/W2913376421","https://openalex.org/W2947640277","https://openalex.org/W2951737218","https://openalex.org/W2968396469","https://openalex.org/W2976757387","https://openalex.org/W3037496568","https://openalex.org/W3041112668","https://openalex.org/W3047712904","https://openalex.org/W3047731862","https://openalex.org/W3086505308","https://openalex.org/W3181361429","https://openalex.org/W3197226962","https://openalex.org/W4230932396","https://openalex.org/W4234552385","https://openalex.org/W4235169531","https://openalex.org/W4243448733","https://openalex.org/W4247613105","https://openalex.org/W4252775870","https://openalex.org/W4299397550","https://openalex.org/W6631637103","https://openalex.org/W6632267817","https://openalex.org/W6644682428","https://openalex.org/W6684050148","https://openalex.org/W6748816842","https://openalex.org/W6812385203"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W3128034986","https://openalex.org/W4306674287","https://openalex.org/W4224009465","https://openalex.org/W1968265719","https://openalex.org/W2176040302","https://openalex.org/W2963026686","https://openalex.org/W2753526458","https://openalex.org/W3177423747","https://openalex.org/W4292719014"],"abstract_inverted_index":{"Many":[0],"biological":[1,54],"applications":[2,145,196],"are":[3,136],"essentially":[4],"pairwise":[5],"comparison":[6,115,178],"problems,":[7],"such":[8],"as":[9],"evolutionary":[10],"relationships":[11],"on":[12,17,23,64],"genomic":[13,147,152,199],"sequences,":[14,153],"contigs":[15],"binning":[16],"metagenomic":[18],"data,":[19],"cell":[20],"type":[21],"identification":[22],"gene":[24,160],"expression":[25,161],"profiles":[26],"of":[27,70,128,146,195],"single-cells,":[28],"etc.":[29],"To":[30],"make":[31],"pair-wise":[32],"comparison,":[33,149],"it":[34],"is":[35,57,109,187,202],"necessary":[36,58],"to":[37,51,59,67,92,98,179,189],"adopt":[38],"suitable":[39],"dissimilarity":[40,123,183],"metric.":[41],"However,":[42],"not":[43,137],"all":[44,52],"the":[45,68,93,126,129,133,170],"metrics":[46],"can":[47],"be":[48],"fully":[49],"adapted":[50],"possible":[53],"applications.":[55],"It":[56],"employ":[60],"metric":[61],"learning":[62],"based":[63],"data":[65,101,105,148],"adaptive":[66,120],"application":[69],"interest.":[71],"Therefore,":[72],"in":[73,96,125,142,177,197],"this":[74],"study,":[75],"we":[76],"proposed":[77],"MEtric":[78],"Learning":[79],"with":[80],"Triplet":[81],"network":[82],"(MELT),":[83],"which":[84,163],"learns":[85],"a":[86,110,191],"nonlinear":[87],"mapping":[88],"from":[89],"original":[90],"space":[91,95],"embedding":[94],"order":[97],"keep":[99],"similar":[100],"closer":[102],"and":[103,113,121,157],"dissimilar":[104],"far":[106],"apart.":[107],"MELT":[108,141,172,186,201],"weakly":[111],"supervised":[112,134],"data-driven":[114],"framework":[116],"that":[117],"offers":[118],"more":[119,192],"accurate":[122],"learned":[124],"absence":[127],"label":[130],"information":[131],"when":[132],"methods":[135],"applicable.":[138],"We":[139],"applied":[140],"three":[143],"typical":[144],"including":[150],"hierarchical":[151],"longitudinal":[154,158],"microbiome":[155],"samples":[156],"single-cell":[159],"profiles,":[162],"have":[164],"no":[165],"distinctive":[166],"grouping":[167],"information.":[168],"In":[169],"experiments,":[171],"demonstrated":[173],"its":[174],"empirical":[175],"utility":[176],"many":[180],"widely":[181],"used":[182],"metrics.":[184],"And":[185],"expected":[188],"accommodate":[190],"extensive":[193],"set":[194],"large-scale":[198],"comparisons.":[200],"available":[203],"at":[204],"https://github.com/Ying-Lab/MELT.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3}],"updated_date":"2026-07-27T06:00:05.401030","created_date":"2025-10-10T00:00:00"}
