{"id":"https://openalex.org/W4291021464","doi":"https://doi.org/10.1093/bib/bbac327","title":"Scalable batch-correction approach for integrating large-scale single-cell transcriptomes","display_name":"Scalable batch-correction approach for integrating large-scale single-cell transcriptomes","publication_year":2022,"publication_date":"2022-08-10","ids":{"openalex":"https://openalex.org/W4291021464","doi":"https://doi.org/10.1093/bib/bbac327","pmid":"https://pubmed.ncbi.nlm.nih.gov/35947966"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac327","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac327","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025477684","display_name":"Xilin Shen","orcid":"https://orcid.org/0000-0001-8746-5801"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xilin Shen","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057920529","display_name":"Hongru Shen","orcid":"https://orcid.org/0000-0001-9147-6044"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongru Shen","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012808034","display_name":"Dan Wu","orcid":"https://orcid.org/0000-0002-6661-2961"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Wu","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002407561","display_name":"Mengyao Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyao Feng","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101830983","display_name":"Jiani Hu","orcid":"https://orcid.org/0000-0003-1733-6822"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiani Hu","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004913564","display_name":"Jilei Liu","orcid":"https://orcid.org/0000-0003-0571-323X"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jilei Liu","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015202222","display_name":"Yichen Yang","orcid":"https://orcid.org/0000-0002-3365-7178"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yichen Yang","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083408391","display_name":"Meng Yang","orcid":"https://orcid.org/0000-0001-5630-6357"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Yang","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100421418","display_name":"Yang Li","orcid":"https://orcid.org/0000-0002-0736-251X"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Li","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011327903","display_name":"Lei Shi","orcid":"https://orcid.org/0000-0003-1149-0474"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]},{"id":"https://openalex.org/I4210114506","display_name":"Ministry of Education","ror":"https://ror.org/01p262204","country_code":"KR","type":"government","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210114506"]},{"id":"https://openalex.org/I4210160994","display_name":"Ministry of Education","ror":"https://ror.org/05w8pph52","country_code":"KN","type":"government","lineage":["https://openalex.org/I4210160994"]}],"countries":["CN","KN","KR"],"is_corresponding":true,"raw_author_name":"Lei Shi","raw_affiliation_strings":["State Key Laboratory of Experimental Hematology , The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Breast Cancer Prevention and Therapy (Ministry of Education), Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, , Tianjin Medical University, Tianjin 300070 , China","Tianjin Medical University Cancer Institute and Hospital , The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Breast Cancer Prevention and Therapy (Ministry of Education), Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, , Tianjin Medical University, Tianjin 300070 , China","State Key Laboratory of Experimental Hematology, The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Breast Cancer Prevention and Therapy (Ministry of Education), Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin 300070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Experimental Hematology , The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Breast Cancer Prevention and Therapy (Ministry of Education), Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, , Tianjin Medical University, Tianjin 300070 , China","institution_ids":["https://openalex.org/I4210114506","https://openalex.org/I4210160994"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Breast Cancer Prevention and Therapy (Ministry of Education), Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, , Tianjin Medical University, Tianjin 300070 , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"State Key Laboratory of Experimental Hematology, The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Key Laboratory of Breast Cancer Prevention and Therapy (Ministry of Education), Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin 300070, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100627368","display_name":"Kexin Chen","orcid":"https://orcid.org/0000-0003-4248-7681"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kexin Chen","raw_affiliation_strings":["Department of Epidemiology and Biostatistics , National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Molecular Cancer Epidemiology of Tianjin, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Molecular Cancer Epidemiology of Tianjin, , Tianjin Medical University, Tianjin , China","Department of Epidemiology and Biostatistics, National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Molecular Cancer Epidemiology of Tianjin, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics , National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Molecular Cancer Epidemiology of Tianjin, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Molecular Cancer Epidemiology of Tianjin, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Molecular Cancer Epidemiology of Tianjin, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090763809","display_name":"Xiangchun Li","orcid":"https://orcid.org/0000-0002-2230-2152"},"institutions":[{"id":"https://openalex.org/I2802573037","display_name":"Tianjin Medical University Cancer Institute and Hospital","ror":"https://ror.org/0152hn881","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802573037"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangchun Li","raw_affiliation_strings":["Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China"],"raw_orcid":"https://orcid.org/0000-0002-2230-2152","affiliations":[{"raw_affiliation_string":"Tianjin Cancer Institute , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Medical University Cancer Institute and Hospital , National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, , Tianjin Medical University, Tianjin , China","institution_ids":["https://openalex.org/I2802573037"]},{"raw_affiliation_string":"Tianjin Cancer Institute, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin Medical University, Tianjin, China","institution_ids":["https://openalex.org/I2802573037"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5011327903","https://openalex.org/A5090763809","https://openalex.org/A5100627368"],"corresponding_institution_ids":["https://openalex.org/I2802573037","https://openalex.org/I4210114506","https://openalex.org/I4210160994"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.2599,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.52006562,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7665152549743652},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7601265907287598},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5955201387405396},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.48769769072532654},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4810540974140167},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4491285979747772},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44515615701675415},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.331987589597702},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3222595453262329},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12313714623451233}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7665152549743652},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7601265907287598},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5955201387405396},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.48769769072532654},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4810540974140167},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4491285979747772},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44515615701675415},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.331987589597702},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3222595453262329},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12313714623451233},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac327","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac327","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35947966","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35947966","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4874588423","display_name":null,"funder_award_id":"31801117","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8007231513","display_name":null,"funder_award_id":"2021YFC2500400","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1493731365","https://openalex.org/W2022181071","https://openalex.org/W2061570747","https://openalex.org/W2072566913","https://openalex.org/W2096192437","https://openalex.org/W2169353806","https://openalex.org/W2169442571","https://openalex.org/W2218571553","https://openalex.org/W2594633041","https://openalex.org/W2612519453","https://openalex.org/W2774307122","https://openalex.org/W2786672974","https://openalex.org/W2788348358","https://openalex.org/W2794480084","https://openalex.org/W2794521141","https://openalex.org/W2801678858","https://openalex.org/W2808837841","https://openalex.org/W2894232765","https://openalex.org/W2898933064","https://openalex.org/W2901677030","https://openalex.org/W2905317377","https://openalex.org/W2911725378","https://openalex.org/W2912006845","https://openalex.org/W2919696154","https://openalex.org/W2942880491","https://openalex.org/W2949067670","https://openalex.org/W2951249671","https://openalex.org/W2951506174","https://openalex.org/W2963446712","https://openalex.org/W2967177832","https://openalex.org/W2984472267","https://openalex.org/W2999410311","https://openalex.org/W3000676906","https://openalex.org/W3009352878","https://openalex.org/W3009561768","https://openalex.org/W3035524453","https://openalex.org/W3040876684","https://openalex.org/W3044388039","https://openalex.org/W3080632072","https://openalex.org/W3086539184","https://openalex.org/W3090295751","https://openalex.org/W3132357920","https://openalex.org/W3175930909","https://openalex.org/W3184894876","https://openalex.org/W4225598893","https://openalex.org/W6668562388","https://openalex.org/W6725739302","https://openalex.org/W6748816842","https://openalex.org/W6755882734","https://openalex.org/W6759867513","https://openalex.org/W6770717842","https://openalex.org/W6774670964"],"related_works":["https://openalex.org/W112744582","https://openalex.org/W3088526462","https://openalex.org/W2789601449","https://openalex.org/W1992807924","https://openalex.org/W2905576882","https://openalex.org/W267672214","https://openalex.org/W2006039862","https://openalex.org/W4252748890","https://openalex.org/W2248666054","https://openalex.org/W1588204645"],"abstract_inverted_index":{"Integration":[0],"of":[1,35,64,73,103,115],"accumulative":[2],"large-scale":[3,26],"single-cell":[4,27,50,116],"transcriptomes":[5,28,117],"requires":[6],"scalable":[7,22],"batch-correction":[8,18],"approaches.":[9],"Here":[10],"we":[11],"propose":[12],"Fugue,":[13],"a":[14,54],"simple":[15],"and":[16,46,93,106],"efficient":[17],"method":[19,37],"that":[20,95],"is":[21,38,58],"for":[23],"integrating":[24,76],"super":[25],"from":[29,81],"diverse":[30],"sources.":[31],"The":[32],"core":[33],"idea":[34],"the":[36,65,71,82,113],"to":[39,49,60],"encode":[40],"batch":[41],"information":[42],"as":[43],"trainable":[44],"parameters":[45],"add":[47],"it":[48],"expression":[51,67],"profile;":[52],"subsequently,":[53],"contrastive":[55],"learning":[56],"approach":[57],"used":[59],"learn":[61],"feature":[62],"representation":[63],"additive":[66],"profile.":[68],"We":[69,86],"demonstrate":[70],"scalability":[72],"Fugue":[74,88,96],"by":[75],"all":[77],"single":[78],"cells":[79],"obtained":[80],"Human":[83],"Cell":[84],"Atlas.":[85],"benchmark":[87],"against":[89],"current":[90],"state-of-the-art":[91],"methods":[92],"show":[94],"consistently":[97],"achieves":[98],"improved":[99],"performance":[100],"in":[101],"terms":[102],"data":[104],"alignment":[105],"clustering":[107],"preservation.":[108],"Our":[109],"study":[110],"will":[111],"facilitate":[112],"integration":[114],"at":[118],"increasingly":[119],"large":[120],"scale.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-01T08:46:32.239190","created_date":"2025-10-10T00:00:00"}
