{"id":"https://openalex.org/W4289338309","doi":"https://doi.org/10.1093/bib/bbac321","title":"Letter on the results of the BASiNET method in the paper \u2018A systematic evaluation of computational tools for lncRNA identification\u2019","display_name":"Letter on the results of the BASiNET method in the paper \u2018A systematic evaluation of computational tools for lncRNA identification\u2019","publication_year":2022,"publication_date":"2022-08-01","ids":{"openalex":"https://openalex.org/W4289338309","doi":"https://doi.org/10.1093/bib/bbac321","pmid":"https://pubmed.ncbi.nlm.nih.gov/35914949"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac321","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac321","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077226712","display_name":"Fabr\u00edcio Martins Lopes","orcid":"https://orcid.org/0000-0002-8786-3313"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Fabr\u00edcio Martins Lopes","raw_affiliation_strings":["Computer Science Department , Universidade Tecnol\u00f3gica Federal do Paran\u00e1 (UTFPR), Alberto Carazzai, 1640, 86300-000, Corn\u00e9lio Proc\u00f3pio, PR, Brazil"],"affiliations":[{"raw_affiliation_string":"Computer Science Department , Universidade Tecnol\u00f3gica Federal do Paran\u00e1 (UTFPR), Alberto Carazzai, 1640, 86300-000, Corn\u00e9lio Proc\u00f3pio, PR, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064448644","display_name":"Matheus Henrique Pimenta-Zanon","orcid":"https://orcid.org/0000-0003-0698-6360"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Matheus H Pimenta-Zanon","raw_affiliation_strings":["Computer Science Department , Universidade Tecnol\u00f3gica Federal do Paran\u00e1 (UTFPR), Alberto Carazzai, 1640, 86300-000, Corn\u00e9lio Proc\u00f3pio, PR, Brazil"],"affiliations":[{"raw_affiliation_string":"Computer Science Department , Universidade Tecnol\u00f3gica Federal do Paran\u00e1 (UTFPR), Alberto Carazzai, 1640, 86300-000, Corn\u00e9lio Proc\u00f3pio, PR, Brazil","institution_ids":["https://openalex.org/I1283613182"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5077226712"],"corresponding_institution_ids":["https://openalex.org/I1283613182"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11317963,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9603999853134155,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9228000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8447238206863403},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7784538269042969},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5308469533920288},{"id":"https://openalex.org/keywords/systematic-error","display_name":"Systematic error","score":0.5122713446617126},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4028841257095337},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3573923110961914},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35118526220321655},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.107928067445755}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8447238206863403},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7784538269042969},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5308469533920288},{"id":"https://openalex.org/C100253034","wikidata":"https://www.wikidata.org/wiki/Q196372","display_name":"Systematic error","level":2,"score":0.5122713446617126},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4028841257095337},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3573923110961914},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35118526220321655},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.107928067445755},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac321","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac321","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35914949","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35914949","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W2806980026","https://openalex.org/W3187121296"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W2384888906","https://openalex.org/W2144190808","https://openalex.org/W4224009465","https://openalex.org/W2101955803","https://openalex.org/W2376314740","https://openalex.org/W2366644548","https://openalex.org/W2357241418","https://openalex.org/W4286629047"],"abstract_inverted_index":{"This":[0],"letter":[1],"points":[2],"out":[3,84],"a":[4,12,17,56,63],"conceptual":[5],"error":[6,28,72],"made":[7,30,45],"by":[8,47,138],"the":[9,32,35,48,51,75,79,86,95,99,108,111,129],"authors":[10,49],"of":[11,21,34,53,78,88,94,110],"published":[13],"paper,":[14],"which":[15],"presents":[16],"review":[18,100],"and":[19,85,113,131],"evaluation":[20],"computational":[22],"methods":[23,127],"in":[24,31,62,98,128],"lncRNA":[25],"identification.":[26],"The":[27,104],"was":[29],"execution":[33,91],"BASiNET":[36,80],"method":[37,81,112],"when":[38],"considering":[39],"an":[40],"example":[41],"file":[42,64],"(toy":[43],"model)":[44],"available":[46],"with":[50,125],"aim":[52],"showing":[54],"how":[55],"classification":[57],"model":[58],"could":[59],"be":[60,122],"stored":[61],"for":[65],"later":[66],"use.":[67],"In":[68],"this":[69,71],"letter,":[70],"is":[73,82],"contextualized,":[74],"correct":[76,90,116],"use":[77,117],"pointed":[83],"results":[87,105],"its":[89,115,133],"to":[92],"one":[93],"datasets":[96],"used":[97],"article":[101],"are":[102],"presented.":[103],"clearly":[106],"show":[107],"misuse":[109,134],"present":[114],"so":[118],"that":[119],"it":[120],"can":[121],"fairly":[123],"compared":[124],"other":[126],"literature":[130],"prevent":[132],"from":[135],"being":[136],"replicated":[137],"new":[139],"studies.":[140]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
