{"id":"https://openalex.org/W4292676375","doi":"https://doi.org/10.1093/bib/bbac319","title":"NeuroPred-CLQ: incorporating deep temporal convolutional networks and multi-head attention mechanism to predict neuropeptides","display_name":"NeuroPred-CLQ: incorporating deep temporal convolutional networks and multi-head attention mechanism to predict neuropeptides","publication_year":2022,"publication_date":"2022-08-21","ids":{"openalex":"https://openalex.org/W4292676375","doi":"https://doi.org/10.1093/bib/bbac319","pmid":"https://pubmed.ncbi.nlm.nih.gov/35988921"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac319","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac319","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103174604","display_name":"Shouzhi Chen","orcid":"https://orcid.org/0000-0001-7016-5335"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shouzhi Chen","raw_affiliation_strings":["School of Mathematics and System Science, Xinjiang University , Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and System Science, Xinjiang University , Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100404176","display_name":"Qing Li","orcid":"https://orcid.org/0000-0003-3370-471X"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Li","raw_affiliation_strings":["School of Mathematics and System Science, Xinjiang University , Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and System Science, Xinjiang University , Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078955823","display_name":"Jianping Zhao","orcid":"https://orcid.org/0000-0002-8486-744X"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianping Zhao","raw_affiliation_strings":["School of Mathematics and System Science, Xinjiang University , Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematics and System Science, Xinjiang University , Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004787761","display_name":"Yannan Bin","orcid":"https://orcid.org/0000-0001-6122-5930"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yannan Bin","raw_affiliation_strings":["School of Computer Science and Technology, Anhui University , Hefei, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Anhui University , Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chunhou Zheng","raw_affiliation_strings":["School of Computer Science and Technology, Anhui University , Hefei, China","School of Mathematics and System Science, Xinjiang University , Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Anhui University , Hefei, China","institution_ids":["https://openalex.org/I143868143"]},{"raw_affiliation_string":"School of Mathematics and System Science, Xinjiang University , Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004787761","https://openalex.org/A5064185915","https://openalex.org/A5078955823"],"corresponding_institution_ids":["https://openalex.org/I143868143","https://openalex.org/I96908189"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.3395,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.89433122,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10814","display_name":"Neuropeptides and Animal Physiology","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.7058584690093994},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.600672721862793},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5980678200721741},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5793666839599609},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5391287207603455},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5284162759780884},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3941451609134674},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3498472273349762},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1624234914779663}],"concepts":[{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.7058584690093994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.600672721862793},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5980678200721741},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5793666839599609},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5391287207603455},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5284162759780884},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3941451609134674},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3498472273349762},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1624234914779663},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009479","descriptor_name":"Neuropeptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009479","descriptor_name":"Neuropeptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009479","descriptor_name":"Neuropeptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac319","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac319","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35988921","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35988921","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5799999833106995,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G247010507","display_name":null,"funder_award_id":"61873001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5006237592","display_name":null,"funder_award_id":"U19A2064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1925671842","https://openalex.org/W1978713113","https://openalex.org/W1980969399","https://openalex.org/W1987212298","https://openalex.org/W1996238403","https://openalex.org/W2064675550","https://openalex.org/W2112796928","https://openalex.org/W2124917755","https://openalex.org/W2131774270","https://openalex.org/W2133564696","https://openalex.org/W2135622703","https://openalex.org/W2140125568","https://openalex.org/W2140412940","https://openalex.org/W2146957549","https://openalex.org/W2158714788","https://openalex.org/W2170747616","https://openalex.org/W2346578990","https://openalex.org/W2462114885","https://openalex.org/W2569818201","https://openalex.org/W2593166288","https://openalex.org/W2801109052","https://openalex.org/W2885583144","https://openalex.org/W2905629607","https://openalex.org/W2922561803","https://openalex.org/W2922873188","https://openalex.org/W2951765074","https://openalex.org/W2963919246","https://openalex.org/W2999309192","https://openalex.org/W3007215678","https://openalex.org/W3009548091","https://openalex.org/W3038400530","https://openalex.org/W3047310964","https://openalex.org/W3092406486","https://openalex.org/W3111392271","https://openalex.org/W3112513398","https://openalex.org/W3129125493","https://openalex.org/W3145990216","https://openalex.org/W3150808126","https://openalex.org/W3160988990","https://openalex.org/W3164453494","https://openalex.org/W3173360330","https://openalex.org/W3195657207","https://openalex.org/W3212983993","https://openalex.org/W4205689731","https://openalex.org/W4210444533","https://openalex.org/W6600995781","https://openalex.org/W6638667902","https://openalex.org/W6679434410","https://openalex.org/W6753699159","https://openalex.org/W6797528262"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2382997850","https://openalex.org/W4375867731","https://openalex.org/W2390968135","https://openalex.org/W2037549926","https://openalex.org/W4226493464","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Neuropeptides":[0],"(NPs)":[1],"are":[2,35],"a":[3,18,81],"particular":[4],"class":[5],"of":[6,44,50,71,106,150],"informative":[7],"substances":[8],"in":[9,21,25,142],"the":[10,42,48,68,88,103,113,133,146,159,164,168,173],"immune":[11],"system":[12],"and":[13,29,93,101,129,179],"physiological":[14,23],"regulation.":[15],"They":[16],"play":[17],"crucial":[19,36],"role":[20],"regulating":[22],"functions":[24],"various":[26],"biological":[27],"growth":[28],"developmental":[30],"stages.":[31],"In":[32,76],"addition,":[33],"NPs":[34,99,144,166],"for":[37,41,74],"developing":[38],"new":[39],"drugs":[40],"treatment":[43],"neurological":[45,185],"diseases.":[46],"With":[47],"development":[49,178],"molecular":[51],"biology":[52],"techniques,":[53],"some":[54],"data-driven":[55],"tools":[56,73],"have":[57],"emerged":[58],"to":[59,66,97,183],"predict":[60],"NPs.":[61,75],"However,":[62],"it":[63],"is":[64],"necessary":[65],"improve":[67],"predictive":[69],"performance":[70,141],"these":[72],"this":[77],"study,":[78],"we":[79],"developed":[80],"deep":[82],"learning":[83],"model":[84,138],"(NeuroPred-CLQ)":[85],"based":[86],"on":[87,132],"temporal":[89],"convolutional":[90],"network":[91],"(TCN)":[92],"multi-head":[94],"attention":[95],"mechanism":[96],"identify":[98],"effectively":[100],"translate":[102],"internal":[104],"relationships":[105],"peptide":[107],"sequences":[108],"into":[109],"numerical":[110],"features":[111,151],"by":[112],"Word2vec":[114],"algorithm.":[115],"The":[116,137],"experimental":[117],"results":[118],"show":[119],"that":[120,158],"NeuroPred-CLQ":[121,160,174],"learns":[122],"data":[123],"information":[124],"effectively,":[125],"achieving":[126],"93.6%":[127],"accuracy":[128],"98.8%":[130],"AUC":[131],"independent":[134],"test":[135],"set.":[136],"has":[139],"better":[140],"identifying":[143],"than":[145],"state-of-the-art":[147],"predictors.":[148],"Visualization":[149],"using":[152],"t-distribution":[153],"random":[154],"neighbor":[155],"embedding":[156],"shows":[157],"can":[161,175],"clearly":[162],"distinguish":[163],"positive":[165],"from":[167],"negative":[169],"ones.":[170],"We":[171],"believe":[172],"facilitate":[176],"drug":[177],"clinical":[180],"trial":[181],"studies":[182],"treat":[184],"disorders.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":6}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
