{"id":"https://openalex.org/W4295269063","doi":"https://doi.org/10.1093/bib/bbac316","title":"SpotLink enables sensitive and precise identification of site nonspecific cross-links at the proteome scale","display_name":"SpotLink enables sensitive and precise identification of site nonspecific cross-links at the proteome scale","publication_year":2022,"publication_date":"2022-07-31","ids":{"openalex":"https://openalex.org/W4295269063","doi":"https://doi.org/10.1093/bib/bbac316","pmid":"https://pubmed.ncbi.nlm.nih.gov/36093786"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac316","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac316","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032832663","display_name":"Weijie Zhang","orcid":"https://orcid.org/0000-0001-5720-3130"},"institutions":[{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weijie Zhang","raw_affiliation_strings":["CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","University of Chinese Academy of Sciences , Beijing 100039 , China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100039 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084552048","display_name":"Pengyun Gong","orcid":"https://orcid.org/0000-0002-0526-1344"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengyun Gong","raw_affiliation_strings":["School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China"],"affiliations":[{"raw_affiliation_string":"School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110539966","display_name":"Yichu Shan","orcid":null},"institutions":[{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yichu Shan","raw_affiliation_strings":["CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011512354","display_name":"Lili Zhao","orcid":"https://orcid.org/0000-0003-2175-9246"},"institutions":[{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lili Zhao","raw_affiliation_strings":["CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","University of Chinese Academy of Sciences , Beijing 100039 , China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100039 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027003386","display_name":"Hongke Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongke Hu","raw_affiliation_strings":["School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China"],"affiliations":[{"raw_affiliation_string":"School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020353110","display_name":"Qiushi Wei","orcid":"https://orcid.org/0000-0001-8162-8796"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiushi Wei","raw_affiliation_strings":["School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China"],"affiliations":[{"raw_affiliation_string":"School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115603774","display_name":"Zhen Liang","orcid":"https://orcid.org/0000-0002-5242-4644"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Liang","raw_affiliation_strings":["CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111581581","display_name":"Chao Liu","orcid":"https://orcid.org/0000-0001-9202-0380"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Liu","raw_affiliation_strings":["School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China"],"affiliations":[{"raw_affiliation_string":"School of Engineering Medicine & School of Biological Science and Medical Engineering, Beihang University , Beijing, 100191 , China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100414909","display_name":"Lihua Zhang","orcid":"https://orcid.org/0000-0003-2543-1547"},"institutions":[{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihua Zhang","raw_affiliation_strings":["CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107928457","display_name":"Yukui Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I180585399","display_name":"Dalian Institute of Chemical Physics","ror":"https://ror.org/00prkya54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I180585399","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yukui Zhang","raw_affiliation_strings":["CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China"],"affiliations":[{"raw_affiliation_string":"CAS Key Laboratory of Separation Science for Analytical Chemistry , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399"]},{"raw_affiliation_string":"Chinese Academy of Sciences , National Chromatographic R. & A. Center, Dalian Institute of Chemical Physics, , Dalian, Liaoning 116023 , China","institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5032832663"],"corresponding_institution_ids":["https://openalex.org/I180585399","https://openalex.org/I19820366","https://openalex.org/I4210165038"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.6005,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.64253538,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7284625768661499},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5804314613342285},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5366569757461548},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5185351967811584},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3313005864620209},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3048165440559387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19563940167427063}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7284625768661499},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5804314613342285},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5366569757461548},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5185351967811584},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3313005864620209},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3048165440559387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19563940167427063},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003432","descriptor_name":"Cross-Linking Reagents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003432","descriptor_name":"Cross-Linking Reagents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003432","descriptor_name":"Cross-Linking Reagents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac316","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac316","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36093786","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36093786","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2448230638","display_name":null,"funder_award_id":"2021YFA1301603","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2774281061","display_name":null,"funder_award_id":"21991082","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3595733581","display_name":null,"funder_award_id":"2020YFE0202200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3731430890","display_name":null,"funder_award_id":"32171442","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4070441609","display_name":null,"funder_award_id":"2021YFA1301602","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5455563334","display_name":null,"funder_award_id":"32088101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G88698870","display_name":null,"funder_award_id":"21725506","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G887799319","display_name":null,"funder_award_id":"2018YFA0507703","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1975057169","https://openalex.org/W1977590840","https://openalex.org/W1988811003","https://openalex.org/W2052928602","https://openalex.org/W2077917986","https://openalex.org/W2101234009","https://openalex.org/W2122863115","https://openalex.org/W2422039703","https://openalex.org/W2594556741","https://openalex.org/W2734651019","https://openalex.org/W2770135693","https://openalex.org/W2793574228","https://openalex.org/W2896816499","https://openalex.org/W2898649585","https://openalex.org/W2901312249","https://openalex.org/W2951624966","https://openalex.org/W2952327480","https://openalex.org/W2953316790","https://openalex.org/W2961560189","https://openalex.org/W2966215858","https://openalex.org/W2974834003","https://openalex.org/W2982570657","https://openalex.org/W2992563866","https://openalex.org/W2995001578","https://openalex.org/W2997275645","https://openalex.org/W3003257820","https://openalex.org/W3035965352","https://openalex.org/W3036754088","https://openalex.org/W3041943142","https://openalex.org/W3099878876","https://openalex.org/W3119123443","https://openalex.org/W3177828909","https://openalex.org/W3190476002","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4377098514","https://openalex.org/W2316833920","https://openalex.org/W2147198186","https://openalex.org/W2140142582","https://openalex.org/W2149218575","https://openalex.org/W3092533418","https://openalex.org/W2219318606","https://openalex.org/W2084001814"],"abstract_inverted_index":{"Nonspecific":[0],"cross-linker":[1,41],"can":[2],"provide":[3],"distance":[4],"restraints":[5],"between":[6],"surface":[7],"residues":[8,34],"of":[9,29,32,79,95,106,113,136,149,158,164],"any":[10],"type,":[11],"which":[12],"could":[13],"be":[14],"used":[15],"to":[16,46],"investigate":[17],"protein":[18],"structure":[19],"construction":[20],"and":[21,75,108,119,140],"protein-protein":[22],"interaction":[23],"(PPI).":[24],"However,":[25],"the":[26,43,50,64,69,76,111,114,120,134,137,141,145,156],"vast":[27],"number":[28],"potential":[30],"combinations":[31],"cross-linked":[33],"or":[35],"sites":[36],"obtained":[37],"with":[38,123],"such":[39],"a":[40,92,161],"makes":[42],"data":[44],"challenging":[45],"analyze,":[47],"especially":[48],"for":[49,58],"proteome-wide":[51],"applications.":[52],"Here,":[53],"we":[54],"developed":[55],"SpotLink":[56,82,100,159],"software":[57],"identifying":[59],"site":[60,150,165],"nonspecific":[61,151,166],"cross-links":[62,86],"at":[63],"proteome":[65],"scale.":[66],"Contributed":[67],"by":[68],"dual":[70],"pointer":[71],"dynamic":[72],"pruning":[73],"algorithm":[74],"quality":[77],"control":[78],"cross-linking":[80,167],"sites,":[81],"identified":[83],">":[84],"3000":[85],"from":[87],"human":[88],"cell":[89],"samples":[90],"within":[91],"short":[93],"period":[94],"days.":[96],"We":[97],"demonstrated":[98],"that":[99],"outperformed":[101],"other":[102],"approaches":[103],"in":[104,133],"terms":[105],"sensitivity":[107],"precision":[109],"on":[110],"datasets":[112,135],"simulated":[115],"succinimidyl":[116],"4,4'-azipentanoate":[117],"dataset":[118],"condensin":[121,138],"complexes":[122,139],"known":[124],"structures.":[125],"In":[126],"addition,":[127],"some":[128],"valuable":[129],"PPI":[130],"were":[131],"discovered":[132],"HeLa":[142],"dataset,":[143],"indicating":[144],"unique":[146],"identification":[147],"advantages":[148],"cross-linking.":[152],"These":[153],"findings":[154],"reinforce":[155],"importance":[157],"as":[160],"fundamental":[162],"characteristic":[163],"technologies.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
