{"id":"https://openalex.org/W4289313674","doi":"https://doi.org/10.1093/bib/bbac312","title":"Nonunique UPGMA clusterings of microsatellite markers","display_name":"Nonunique UPGMA clusterings of microsatellite markers","publication_year":2022,"publication_date":"2022-08-01","ids":{"openalex":"https://openalex.org/W4289313674","doi":"https://doi.org/10.1093/bib/bbac312","pmid":"https://pubmed.ncbi.nlm.nih.gov/35915053"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac312","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac312","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac312/45937168/bbac312.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac312/45937168/bbac312.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092683076","display_name":"Nat\u00e0lia Segura-Alabart","orcid":"https://orcid.org/0000-0002-6276-2049"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nat\u00e0lia Segura-Alabart","raw_affiliation_strings":["Departament d\u2019Enginyeria Inform\u00e1tica i Matem\u00e1tiques, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain"],"affiliations":[{"raw_affiliation_string":"Departament d\u2019Enginyeria Inform\u00e1tica i Matem\u00e1tiques, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090033395","display_name":"Francesc Serratosa","orcid":"https://orcid.org/0000-0001-6112-5913"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francesc Serratosa","raw_affiliation_strings":["Departament d\u2019Enginyeria Inform\u00e1tica i Matem\u00e1tiques, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain"],"affiliations":[{"raw_affiliation_string":"Departament d\u2019Enginyeria Inform\u00e1tica i Matem\u00e1tiques, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040997517","display_name":"Sergio G\u00f3mez","orcid":"https://orcid.org/0000-0003-1820-0062"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sergio G\u00f3mez","raw_affiliation_strings":["Departament d\u2019Enginyeria Inform\u00e1tica i Matem\u00e1tiques, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain"],"affiliations":[{"raw_affiliation_string":"Departament d\u2019Enginyeria Inform\u00e1tica i Matem\u00e1tiques, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain","institution_ids":["https://openalex.org/I55952717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107410873","display_name":"Alberto Fern\u00e1ndez","orcid":"https://orcid.org/0000-0002-1241-1646"},"institutions":[{"id":"https://openalex.org/I55952717","display_name":"Universidad Rovira i Virgili","ror":"https://ror.org/00g5sqv46","country_code":"ES","type":"education","lineage":["https://openalex.org/I55952717"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alberto Fern\u00e1ndez","raw_affiliation_strings":["Departament d\u2019Enginyeria Qu\u00e1mica, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain"],"affiliations":[{"raw_affiliation_string":"Departament d\u2019Enginyeria Qu\u00e1mica, Universitat Rovira i Virgili , Av. Pa\u00efsos Catalans 26, 43007, Tarragona , Spain","institution_ids":["https://openalex.org/I55952717"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5107410873"],"corresponding_institution_ids":["https://openalex.org/I55952717"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.7331,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.84737857,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upgma","display_name":"UPGMA","score":0.9363747835159302},{"id":"https://openalex.org/keywords/microsatellite","display_name":"Microsatellite","score":0.7898380756378174},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5330214500427246},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.50081467628479},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3594675660133362},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29891109466552734},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23880288004875183},{"id":"https://openalex.org/keywords/genetic-variation","display_name":"Genetic variation","score":0.12261888384819031},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08650848269462585}],"concepts":[{"id":"https://openalex.org/C194898557","wikidata":"https://www.wikidata.org/wiki/Q1779497","display_name":"UPGMA","level":4,"score":0.9363747835159302},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.7898380756378174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5330214500427246},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.50081467628479},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3594675660133362},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29891109466552734},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23880288004875183},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.12261888384819031},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08650848269462585},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018895","descriptor_name":"Microsatellite Repeats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac312","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac312","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac312/45937168/bbac312.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35915053","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35915053","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9487649","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9487649","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac312","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac312","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac312/45937168/bbac312.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3259744654","display_name":null,"funder_award_id":"2020PANDE00098","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G5781040756","display_name":null,"funder_award_id":"RED2018-102518-T","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"},{"id":"https://openalex.org/G6907531782","display_name":null,"funder_award_id":"PGC2018-094754-BC21","funder_id":"https://openalex.org/F4320321837","funder_display_name":"Ministerio de Econom\u00eda y Competitividad"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4289313674.pdf","grobid_xml":"https://content.openalex.org/works/W4289313674.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W128776091","https://openalex.org/W320645982","https://openalex.org/W1976509063","https://openalex.org/W1982935295","https://openalex.org/W1988357837","https://openalex.org/W2005317838","https://openalex.org/W2028861416","https://openalex.org/W2032464214","https://openalex.org/W2037210253","https://openalex.org/W2051779798","https://openalex.org/W2080948198","https://openalex.org/W2101234009","https://openalex.org/W2116585889","https://openalex.org/W2134100215","https://openalex.org/W2138582694","https://openalex.org/W2142644281","https://openalex.org/W2146290595","https://openalex.org/W2148531664","https://openalex.org/W2156843275","https://openalex.org/W2171114940","https://openalex.org/W2171188433","https://openalex.org/W2171787842","https://openalex.org/W2269863304","https://openalex.org/W2509368154","https://openalex.org/W2558202273","https://openalex.org/W2582743722","https://openalex.org/W2735162327","https://openalex.org/W2763570909","https://openalex.org/W2764328358","https://openalex.org/W2949214507","https://openalex.org/W2959239999","https://openalex.org/W2970916646","https://openalex.org/W3003257820","https://openalex.org/W3092540581","https://openalex.org/W3099599767","https://openalex.org/W3103145119","https://openalex.org/W3201398313","https://openalex.org/W6605268149","https://openalex.org/W6644246516","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2388816175","https://openalex.org/W3003858429","https://openalex.org/W2187276324","https://openalex.org/W2029130118","https://openalex.org/W2356456573","https://openalex.org/W2900625899","https://openalex.org/W4386854327","https://openalex.org/W2099618316"],"abstract_inverted_index":{"Agglomerative":[0],"hierarchical":[1,64,110,160],"clustering":[2,47,65,79,111],"has":[3],"become":[4],"a":[5,19,40,129],"common":[6],"tool":[7],"for":[8,53],"the":[9,43,46,69,78,84,97,102,119,126,151],"analysis":[10],"and":[11,25,31,150],"visualization":[12],"of":[13,22,29,45,71,80,99,118,132,139],"data,":[14],"thus":[15],"being":[16],"present":[17],"in":[18,62,74,105],"large":[20],"amount":[21],"scientific":[23],"research":[24],"predating":[26],"all":[27],"areas":[28],"bioinformatics":[30],"computational":[32],"biology.":[33],"In":[34],"this":[35,72],"work,":[36],"we":[37,94,134],"focus":[38],"on":[39],"critical":[41],"problem,":[42],"nonuniqueness":[44],"when":[48],"there":[49],"are":[50,59,121],"tied":[51],"distances,":[52],"which":[54,106],"several":[55],"solutions":[56],"exist":[57],"but":[58],"not":[60],"implemented":[61],"most":[63],"packages.":[66],"We":[67],"analyze":[68],"magnitude":[70],"problem":[73,127],"one":[75,109,145],"particular":[76],"setting:":[77],"microsatellite":[81],"markers":[82],"using":[83],"Unweighted":[85],"Pair-Group":[86],"Method":[87],"with":[88,146,153],"Arithmetic":[89],"Mean.":[90],"To":[91],"do":[92],"so,":[93],"have":[95,142],"calculated":[96],"fraction":[98],"publications":[100],"at":[101],"Scopus":[103],"database":[104],"more":[107,154],"than":[108,155],"is":[112],"possible,":[113],"showing":[114],"that":[115,141],"about":[116],"46%":[117],"articles":[120,140],"affected.":[122],"Additionally,":[123],"to":[124],"show":[125],"from":[128],"practical":[130],"point":[131],"view,":[133],"selected":[135],"two":[136,147],"opposite":[137],"examples":[138],"multiple":[143],"solutions:":[144],"possible":[148,159],"dendrograms,":[149],"other":[152],"2.5":[156],"million":[157],"different":[158],"clusterings.":[161]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":8}],"updated_date":"2026-03-22T08:09:32.410652","created_date":"2025-10-10T00:00:00"}
