{"id":"https://openalex.org/W4289316813","doi":"https://doi.org/10.1093/bib/bbac309","title":"Computational models, databases and tools for antibiotic combinations","display_name":"Computational models, databases and tools for antibiotic combinations","publication_year":2022,"publication_date":"2022-08-01","ids":{"openalex":"https://openalex.org/W4289316813","doi":"https://doi.org/10.1093/bib/bbac309","pmid":"https://pubmed.ncbi.nlm.nih.gov/35915052"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac309","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac309","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046662734","display_name":"Ji Lv","orcid":"https://orcid.org/0000-0002-3693-8979"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ji Lv","raw_affiliation_strings":["College of Computer Science and Technology, Jilin University , Changchun, China","Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Jilin University , Changchun, China","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101576374","display_name":"Guixia Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guixia Liu","raw_affiliation_strings":["College of Computer Science and Technology, Jilin University , Changchun, China","Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Jilin University , Changchun, China","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018254914","display_name":"Junli Hao","orcid":"https://orcid.org/0000-0002-4659-8461"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junli Hao","raw_affiliation_strings":["College of Food Science, Northeast Agricultural University , Harbin, China"],"affiliations":[{"raw_affiliation_string":"College of Food Science, Northeast Agricultural University , Harbin, China","institution_ids":["https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021640916","display_name":"Yuan Ju","orcid":"https://orcid.org/0000-0002-7675-2976"},"institutions":[{"id":"https://openalex.org/I4210165778","display_name":"Sichuan Provincial Library","ror":"https://ror.org/01z03am77","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210165778"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Ju","raw_affiliation_strings":["Sichuan University Library, Sichuan University , Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Sichuan University Library, Sichuan University , Chengdu, China","institution_ids":["https://openalex.org/I4210165778","https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078839250","display_name":"Binwen Sun","orcid":"https://orcid.org/0000-0001-5360-4439"},"institutions":[{"id":"https://openalex.org/I4210100868","display_name":"Second Affiliated Hospital of Dalian Medical University","ror":"https://ror.org/012f2cn18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210100868"]},{"id":"https://openalex.org/I191996457","display_name":"Dalian Medical University","ror":"https://ror.org/04c8eg608","country_code":"CN","type":"education","lineage":["https://openalex.org/I191996457"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binwen Sun","raw_affiliation_strings":["Engineering Research Center for New Materials and Precision Treatment Technology of Malignant Tumor Therapy, The Second Affiliated Hospital of Dalian Medical University , Dalian, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center for New Materials and Precision Treatment Technology of Malignant Tumor Therapy, The Second Affiliated Hospital of Dalian Medical University , Dalian, China","institution_ids":["https://openalex.org/I191996457","https://openalex.org/I4210100868"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101640293","display_name":"Ying Sun","orcid":"https://orcid.org/0000-0003-2969-300X"},"institutions":[{"id":"https://openalex.org/I4210125137","display_name":"First Hospital of Jilin University","ror":"https://ror.org/034haf133","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210125137"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Sun","raw_affiliation_strings":["Department of Respiratory Medicine, the First Hospital of Jilin University , Changchun, China"],"affiliations":[{"raw_affiliation_string":"Department of Respiratory Medicine, the First Hospital of Jilin University , Changchun, China","institution_ids":["https://openalex.org/I4210125137","https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101576374"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210134929"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.8047,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.8688231,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6909899711608887},{"id":"https://openalex.org/keywords/antibiotics","display_name":"Antibiotics","score":0.645642876625061},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.633321225643158},{"id":"https://openalex.org/keywords/antibiotic-resistance","display_name":"Antibiotic resistance","score":0.5259469151496887},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30206751823425293},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12218412756919861},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.07157343626022339}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6909899711608887},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.645642876625061},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.633321225643158},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.5259469151496887},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30206751823425293},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12218412756919861},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.07157343626022339}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac309","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac309","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35915052","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35915052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/8"}],"awards":[{"id":"https://openalex.org/G5230304752","display_name":null,"funder_award_id":"20200201159JC","funder_id":"https://openalex.org/F4320310121","funder_display_name":"Natural Science Foundation of Jilin Province"},{"id":"https://openalex.org/G6048503640","display_name":null,"funder_award_id":"61772226","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320310121","display_name":"Natural Science Foundation of Jilin Province","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":96,"referenced_works":["https://openalex.org/W1696775091","https://openalex.org/W1823184461","https://openalex.org/W1965575582","https://openalex.org/W1978995242","https://openalex.org/W1982301941","https://openalex.org/W1985161570","https://openalex.org/W1989446693","https://openalex.org/W1994321911","https://openalex.org/W2015789827","https://openalex.org/W2016562927","https://openalex.org/W2031932867","https://openalex.org/W2033591223","https://openalex.org/W2042493870","https://openalex.org/W2044025814","https://openalex.org/W2048593866","https://openalex.org/W2056782561","https://openalex.org/W2060737851","https://openalex.org/W2074967170","https://openalex.org/W2081183202","https://openalex.org/W2089559915","https://openalex.org/W2090433162","https://openalex.org/W2106418531","https://openalex.org/W2112396377","https://openalex.org/W2113025130","https://openalex.org/W2115147179","https://openalex.org/W2121581360","https://openalex.org/W2132011921","https://openalex.org/W2148866967","https://openalex.org/W2154273408","https://openalex.org/W2155157371","https://openalex.org/W2155626151","https://openalex.org/W2335854816","https://openalex.org/W2344726805","https://openalex.org/W2389935477","https://openalex.org/W2404944565","https://openalex.org/W2473876819","https://openalex.org/W2489596030","https://openalex.org/W2551072359","https://openalex.org/W2600297185","https://openalex.org/W2605156573","https://openalex.org/W2605336808","https://openalex.org/W2606225198","https://openalex.org/W2610846423","https://openalex.org/W2614307272","https://openalex.org/W2622556140","https://openalex.org/W2777417212","https://openalex.org/W2787894218","https://openalex.org/W2790203313","https://openalex.org/W2810727101","https://openalex.org/W2887752833","https://openalex.org/W2894559996","https://openalex.org/W2907559772","https://openalex.org/W2912247484","https://openalex.org/W2936503027","https://openalex.org/W2938214930","https://openalex.org/W2943226553","https://openalex.org/W2948831026","https://openalex.org/W2950191082","https://openalex.org/W2967193771","https://openalex.org/W2985884608","https://openalex.org/W2992010506","https://openalex.org/W2997560911","https://openalex.org/W3003840025","https://openalex.org/W3010088756","https://openalex.org/W3010510020","https://openalex.org/W3021294679","https://openalex.org/W3022285953","https://openalex.org/W3032054954","https://openalex.org/W3040567548","https://openalex.org/W3048659894","https://openalex.org/W3048865162","https://openalex.org/W3049129644","https://openalex.org/W3087978518","https://openalex.org/W3094310486","https://openalex.org/W3098172061","https://openalex.org/W3107514561","https://openalex.org/W3111662949","https://openalex.org/W3119520629","https://openalex.org/W3125255480","https://openalex.org/W3128536799","https://openalex.org/W3150513302","https://openalex.org/W3156988213","https://openalex.org/W3158868742","https://openalex.org/W3175204360","https://openalex.org/W3183139760","https://openalex.org/W3188733779","https://openalex.org/W3196304395","https://openalex.org/W3208762240","https://openalex.org/W4206677002","https://openalex.org/W4213458101","https://openalex.org/W4220754967","https://openalex.org/W4221052988","https://openalex.org/W6703221619","https://openalex.org/W6737152786","https://openalex.org/W6755426850","https://openalex.org/W6770425227"],"related_works":["https://openalex.org/W2955020749","https://openalex.org/W2029063045","https://openalex.org/W2507683919","https://openalex.org/W2076505260","https://openalex.org/W4229455480","https://openalex.org/W4226193097","https://openalex.org/W4320037900","https://openalex.org/W4205293155","https://openalex.org/W4297123388","https://openalex.org/W3032187068"],"abstract_inverted_index":{"Antibiotic":[0],"combination":[1],"is":[2,23],"a":[3],"promising":[4],"strategy":[5],"to":[6,40,85],"extend":[7],"the":[8,58],"lifetime":[9],"of":[10,34,62],"antibiotics":[11],"and":[12,26,56,60,72,77,92],"thereby":[13],"combat":[14],"antimicrobial":[15],"resistance.":[16],"However,":[17],"screening":[18],"for":[19,53,79],"new":[20],"antibiotic":[21,43,54,80],"combinations":[22,55],"both":[24],"time-consuming":[25],"labor-intensive.":[27],"In":[28,45,67],"recent":[29],"years,":[30],"an":[31],"increasing":[32],"number":[33],"researchers":[35],"have":[36],"used":[37],"computational":[38,51,87,94],"models":[39,52,64],"predict":[41],"effective":[42],"combinations.":[44,81],"this":[46],"review,":[47],"we":[48,69],"summarized":[49,73],"existing":[50],"discussed":[57],"limitations":[59],"challenges":[61],"these":[63],"in":[65],"detail.":[66],"addition,":[68],"also":[70],"collected":[71],"available":[74],"data":[75],"resources":[76],"tools":[78],"This":[82],"study":[83],"aims":[84],"help":[86],"biologists":[88],"design":[89],"more":[90],"accurate":[91],"interpretable":[93],"models.":[95]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-15T09:29:46.208133","created_date":"2025-10-10T00:00:00"}
