{"id":"https://openalex.org/W4283592141","doi":"https://doi.org/10.1093/bib/bbac234","title":"Cell\u2013cell communication inference and analysis in the tumour microenvironments from single-cell transcriptomics: data resources and computational strategies","display_name":"Cell\u2013cell communication inference and analysis in the tumour microenvironments from single-cell transcriptomics: data resources and computational strategies","publication_year":2022,"publication_date":"2022-06-26","ids":{"openalex":"https://openalex.org/W4283592141","doi":"https://doi.org/10.1093/bib/bbac234","pmid":"https://pubmed.ncbi.nlm.nih.gov/35753695"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac234","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac234","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007339758","display_name":"Lihong Peng","orcid":"https://orcid.org/0000-0002-2321-3901"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lihong Peng","raw_affiliation_strings":["College of Life Sciences and Chemistry, Hunan University of Technology , 412007, Hunan, China","School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences and Chemistry, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]},{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011303679","display_name":"Feixiang Wang","orcid":"https://orcid.org/0000-0003-2645-7968"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feixiang Wang","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100434574","display_name":"Zhao Wang","orcid":"https://orcid.org/0000-0003-4897-9986"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhao Wang","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011511356","display_name":"Jingwei Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingwei Tan","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100744865","display_name":"Huang Li","orcid":"https://orcid.org/0000-0003-4669-3466"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Huang","raw_affiliation_strings":["Academy of Arts and Design, Tsinghua University , 10084, Beijing, China","The Future Laboratory, Tsinghua University , 10084, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Academy of Arts and Design, Tsinghua University , 10084, Beijing, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"The Future Laboratory, Tsinghua University , 10084, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041678200","display_name":"Xiongfei Tian","orcid":"https://orcid.org/0000-0002-7425-7605"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiongfei Tian","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100737332","display_name":"Guangyi Liu","orcid":"https://orcid.org/0000-0002-6813-174X"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangyi Liu","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031627686","display_name":"Liqian Zhou","orcid":"https://orcid.org/0000-0002-1526-2551"},"institutions":[{"id":"https://openalex.org/I49934816","display_name":"Hunan University of Technology","ror":"https://ror.org/04j3vr751","country_code":"CN","type":"education","lineage":["https://openalex.org/I49934816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liqian Zhou","raw_affiliation_strings":["School of Computer Science, Hunan University of Technology , 412007, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Hunan University of Technology , 412007, Hunan, China","institution_ids":["https://openalex.org/I49934816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5007339758"],"corresponding_institution_ids":["https://openalex.org/I49934816"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":7.6384,"has_fulltext":false,"cited_by_count":95,"citation_normalized_percentile":{"value":0.9839213,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.6339758634567261},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5946011543273926},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5576366186141968},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5292769074440002},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5182985663414001},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3414347171783447},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2945646047592163},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20144295692443848},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1615884006023407},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10114416480064392},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09491440653800964}],"concepts":[{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.6339758634567261},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5946011543273926},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5576366186141968},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5292769074440002},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5182985663414001},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3414347171783447},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2945646047592163},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20144295692443848},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1615884006023407},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10114416480064392},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09491440653800964}],"mesh":[{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac234","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac234","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35753695","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35753695","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4031356638","display_name":null,"funder_award_id":"61803151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5040992507","display_name":null,"funder_award_id":"62072172","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5204014338","display_name":null,"funder_award_id":"2021JJ30219","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G632310686","display_name":null,"funder_award_id":"62172158","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":109,"referenced_works":["https://openalex.org/W1016059894","https://openalex.org/W1631320694","https://openalex.org/W1971825415","https://openalex.org/W2013223495","https://openalex.org/W2035252444","https://openalex.org/W2069089843","https://openalex.org/W2070602352","https://openalex.org/W2106391842","https://openalex.org/W2120109270","https://openalex.org/W2139442812","https://openalex.org/W2160041854","https://openalex.org/W2167980479","https://openalex.org/W2557833574","https://openalex.org/W2604408404","https://openalex.org/W2608857739","https://openalex.org/W2743344672","https://openalex.org/W2753269195","https://openalex.org/W2765741717","https://openalex.org/W2783252067","https://openalex.org/W2789637558","https://openalex.org/W2801437236","https://openalex.org/W2894687190","https://openalex.org/W2895653425","https://openalex.org/W2896732826","https://openalex.org/W2900411771","https://openalex.org/W2900569176","https://openalex.org/W2907514116","https://openalex.org/W2908139053","https://openalex.org/W2912065541","https://openalex.org/W2916288174","https://openalex.org/W2918086501","https://openalex.org/W2919115771","https://openalex.org/W2920615695","https://openalex.org/W2949471597","https://openalex.org/W2950479715","https://openalex.org/W2958555575","https://openalex.org/W2962001321","https://openalex.org/W2962928958","https://openalex.org/W2972020367","https://openalex.org/W2972983657","https://openalex.org/W2973034691","https://openalex.org/W2980628747","https://openalex.org/W2983881420","https://openalex.org/W2992151131","https://openalex.org/W2995703197","https://openalex.org/W2999410311","https://openalex.org/W2999977864","https://openalex.org/W3004268891","https://openalex.org/W3004512212","https://openalex.org/W3007935255","https://openalex.org/W3008563687","https://openalex.org/W3010299674","https://openalex.org/W3012498554","https://openalex.org/W3013306611","https://openalex.org/W3014913757","https://openalex.org/W3015184839","https://openalex.org/W3022836409","https://openalex.org/W3023051088","https://openalex.org/W3024849471","https://openalex.org/W3026876979","https://openalex.org/W3027626844","https://openalex.org/W3027774968","https://openalex.org/W3032266082","https://openalex.org/W3036371598","https://openalex.org/W3044388039","https://openalex.org/W3045930758","https://openalex.org/W3049002444","https://openalex.org/W3082620742","https://openalex.org/W3083756487","https://openalex.org/W3092318937","https://openalex.org/W3093527115","https://openalex.org/W3094549124","https://openalex.org/W3094645479","https://openalex.org/W3097354806","https://openalex.org/W3097586971","https://openalex.org/W3099810371","https://openalex.org/W3107635367","https://openalex.org/W3111222208","https://openalex.org/W3123592252","https://openalex.org/W3128209463","https://openalex.org/W3128999657","https://openalex.org/W3130232612","https://openalex.org/W3132259578","https://openalex.org/W3132661792","https://openalex.org/W3133005300","https://openalex.org/W3138055079","https://openalex.org/W3163290491","https://openalex.org/W3165051998","https://openalex.org/W3179439439","https://openalex.org/W3179578012","https://openalex.org/W3180289141","https://openalex.org/W3184931457","https://openalex.org/W3205475594","https://openalex.org/W3217643826","https://openalex.org/W4200311748","https://openalex.org/W4205213055","https://openalex.org/W4210583065","https://openalex.org/W4213066726","https://openalex.org/W4226172551","https://openalex.org/W4239678514","https://openalex.org/W4246105018","https://openalex.org/W4254396225","https://openalex.org/W4286863882","https://openalex.org/W4294216483","https://openalex.org/W6684458860","https://openalex.org/W6736652875","https://openalex.org/W6757519749","https://openalex.org/W6803475526","https://openalex.org/W6835809488"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W3169186547","https://openalex.org/W2160733843","https://openalex.org/W2545003596"],"abstract_inverted_index":{"Carcinomas":[0],"are":[1],"complex":[2],"ecosystems":[3],"composed":[4],"of":[5,31,55,110,150],"cancer,":[6],"stromal":[7],"and":[8,15,21,40,57,89,96,125,132,139,143,183],"immune":[9],"cells.":[10],"Communication":[11],"between":[12,39],"these":[13],"cells":[14],"their":[16],"microenvironments":[17],"induces":[18],"cancer":[19],"progression":[20],"causes":[22],"therapy":[23],"resistance.":[24],"In":[25,69],"order":[26],"to":[27,36,178,184],"improve":[28],"the":[29,51,75,130,141,146,169],"treatment":[30],"cancers,":[32],"it":[33],"is":[34],"essential":[35],"quantify":[37],"crosstalk":[38,182],"within":[41],"various":[42],"cell":[43],"types":[44,109,149],"in":[45,168],"a":[46,91],"tumour":[47,170],"microenvironment.":[48],"Focusing":[49],"on":[50],"coordinated":[52],"expression":[53],"patterns":[54],"ligands":[56],"cognate":[58],"receptors,":[59],"cell-cell":[60,151,188],"communication":[61,84,104,113,137,152,166,189],"can":[62],"be":[63],"inferred":[64],"through":[65],"ligand-receptor":[66],"interactions":[67],"(LRIs).":[68],"this":[70,175],"manuscript,":[71],"we":[72],"carry":[73],"out":[74],"following":[76],"work:":[77],"(i)":[78],"introduce":[79],"pipeline":[80],"for":[81,135,145,164,192],"ligand-receptor-mediated":[82],"intercellular":[83,103,112,136,165,181],"estimation":[85,190],"from":[86],"single-cell":[87],"transcriptomics":[88],"list":[90],"few":[92],"available":[93],"LRI-related":[94],"databases":[95],"visualization":[97],"tools;":[98],"(ii)":[99],"demonstrate":[100],"seven":[101],"classical":[102],"scoring":[105],"strategies,":[106],"highlight":[107],"four":[108,148],"representative":[111],"inference":[114,138],"methods,":[115],"including":[116],"network-based":[117],"approaches,":[118,121],"machine":[119],"learning-based":[120],"spatial":[122],"information-based":[123],"approaches":[124],"other":[126],"approaches;":[127],"(iii)":[128],"summarize":[129],"evaluation":[131],"validation":[133],"avenues":[134],"analyze":[140],"advantages":[142],"limitations":[144],"above":[147],"methods;":[153],"(iv)":[154],"comment":[155],"several":[156],"major":[157],"challenges":[158],"while":[159],"provide":[160],"further":[161,185],"research":[162],"directions":[163],"analysis":[167],"microenvironments.":[171],"We":[172],"anticipate":[173],"that":[174],"work":[176],"helps":[177],"better":[179],"understand":[180],"develop":[186],"powerful":[187],"tools":[191],"tumor-targeted":[193],"therapy.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":8}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
