{"id":"https://openalex.org/W4282973496","doi":"https://doi.org/10.1093/bib/bbac229","title":"Network approaches for modeling the effect of drugs and diseases","display_name":"Network approaches for modeling the effect of drugs and diseases","publication_year":2022,"publication_date":"2022-06-15","ids":{"openalex":"https://openalex.org/W4282973496","doi":"https://doi.org/10.1093/bib/bbac229","pmid":"https://pubmed.ncbi.nlm.nih.gov/35704883"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac229","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac229/45017502/bbac229.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac229/45017502/bbac229.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004153233","display_name":"Teemu Rintala","orcid":"https://orcid.org/0000-0003-1849-235X"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"T J Rintala","raw_affiliation_strings":["Institute of Biomedicine, University of Eastern Finland , 70210 Kuopio , Finland"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedicine, University of Eastern Finland , 70210 Kuopio , Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027834679","display_name":"Arindam Ghosh","orcid":"https://orcid.org/0000-0002-8779-0986"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Arindam Ghosh","raw_affiliation_strings":["Institute of Biomedicine, University of Eastern Finland , 70210 Kuopio , Finland"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedicine, University of Eastern Finland , 70210 Kuopio , Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011752174","display_name":"Vittorio Fortino","orcid":"https://orcid.org/0000-0001-8693-5285"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"V Fortino","raw_affiliation_strings":["Institute of Biomedicine, University of Eastern Finland , 70210 Kuopio , Finland"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedicine, University of Eastern Finland , 70210 Kuopio , Finland","institution_ids":["https://openalex.org/I175532246"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011752174"],"corresponding_institution_ids":["https://openalex.org/I175532246"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.3749,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.95089838,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6777310967445374},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6293758153915405},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5634194612503052},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5440371632575989},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5304529070854187},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5280904173851013},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5061737895011902},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5019021034240723},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.48982569575309753},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.46684321761131287},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.43164923787117004},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3671324551105499},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3121080696582794},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2608272135257721},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22538712620735168}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6777310967445374},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6293758153915405},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5634194612503052},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5440371632575989},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5304529070854187},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5280904173851013},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5061737895011902},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5019021034240723},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.48982569575309753},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.46684321761131287},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.43164923787117004},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3671324551105499},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3121080696582794},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2608272135257721},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22538712620735168},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093485","descriptor_name":"COVID-19 Drug Treatment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac229","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac229/45017502/bbac229.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35704883","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35704883","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9294412","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9294412","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac229","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac229/45017502/bbac229.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6499999761581421,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4615739710","display_name":null,"funder_award_id":"336275","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G5568684092","display_name":null,"funder_award_id":"32510","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G7014781287","display_name":"Biomarker Discovery for Precision Medicine: an Artificial Intelligence based approach.","funder_award_id":"332510","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G7306447382","display_name":null,"funder_award_id":"332510","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320322282","display_name":"Jane ja Aatos Erkon S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/03vxy9y38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282973496.pdf","grobid_xml":"https://content.openalex.org/works/W4282973496.grobid-xml"},"referenced_works_count":148,"referenced_works":["https://openalex.org/W1935434993","https://openalex.org/W1965680834","https://openalex.org/W1971421925","https://openalex.org/W1982390234","https://openalex.org/W1987219048","https://openalex.org/W1989277387","https://openalex.org/W1996202645","https://openalex.org/W2018838463","https://openalex.org/W2031954078","https://openalex.org/W2043764521","https://openalex.org/W2062533676","https://openalex.org/W2099536383","https://openalex.org/W2099892456","https://openalex.org/W2108068107","https://openalex.org/W2111213181","https://openalex.org/W2118258530","https://openalex.org/W2120358246","https://openalex.org/W2130790725","https://openalex.org/W2131681506","https://openalex.org/W2132202037","https://openalex.org/W2137632714","https://openalex.org/W2144086069","https://openalex.org/W2145578524","https://openalex.org/W2153580689","https://openalex.org/W2154654747","https://openalex.org/W2154851992","https://openalex.org/W2155764317","https://openalex.org/W2158135353","https://openalex.org/W2158485828","https://openalex.org/W2161604082","https://openalex.org/W2169528473","https://openalex.org/W2174734928","https://openalex.org/W2263739890","https://openalex.org/W2294516783","https://openalex.org/W2329674354","https://openalex.org/W2346950316","https://openalex.org/W2461427403","https://openalex.org/W2518309745","https://openalex.org/W2534652523","https://openalex.org/W2591869837","https://openalex.org/W2607497028","https://openalex.org/W2607500032","https://openalex.org/W2612467560","https://openalex.org/W2736172938","https://openalex.org/W2739902663","https://openalex.org/W2743104969","https://openalex.org/W2753953057","https://openalex.org/W2761739829","https://openalex.org/W2767891136","https://openalex.org/W2768977980","https://openalex.org/W2786016794","https://openalex.org/W2795686629","https://openalex.org/W2799845593","https://openalex.org/W2805453692","https://openalex.org/W2806512480","https://openalex.org/W2809156537","https://openalex.org/W2826750344","https://openalex.org/W2883248903","https://openalex.org/W2898789672","https://openalex.org/W2899760200","https://openalex.org/W2901246787","https://openalex.org/W2901527454","https://openalex.org/W2911489562","https://openalex.org/W2911969472","https://openalex.org/W2913996609","https://openalex.org/W2916047525","https://openalex.org/W2917858269","https://openalex.org/W2918193787","https://openalex.org/W2921321912","https://openalex.org/W2922229918","https://openalex.org/W2945027804","https://openalex.org/W2945266622","https://openalex.org/W2948035163","https://openalex.org/W2949367643","https://openalex.org/W2951449549","https://openalex.org/W2951531839","https://openalex.org/W2952143471","https://openalex.org/W2952522777","https://openalex.org/W2955011300","https://openalex.org/W2956963717","https://openalex.org/W2961798429","https://openalex.org/W2965506096","https://openalex.org/W2983166786","https://openalex.org/W2987639113","https://openalex.org/W2995448904","https://openalex.org/W2998462049","https://openalex.org/W2999886378","https://openalex.org/W3001475835","https://openalex.org/W3003893414","https://openalex.org/W3011072970","https://openalex.org/W3011402647","https://openalex.org/W3015444032","https://openalex.org/W3022285953","https://openalex.org/W3024785185","https://openalex.org/W3026590953","https://openalex.org/W3032892710","https://openalex.org/W3033000020","https://openalex.org/W3043379468","https://openalex.org/W3043574076","https://openalex.org/W3082409224","https://openalex.org/W3093053585","https://openalex.org/W3093194543","https://openalex.org/W3096828292","https://openalex.org/W3096999989","https://openalex.org/W3097857367","https://openalex.org/W3099768174","https://openalex.org/W3102648521","https://openalex.org/W3104097132","https://openalex.org/W3106143834","https://openalex.org/W3107156000","https://openalex.org/W3107514561","https://openalex.org/W3107527779","https://openalex.org/W3112541839","https://openalex.org/W3116278528","https://openalex.org/W3117562192","https://openalex.org/W3118594101","https://openalex.org/W3132273599","https://openalex.org/W3138130200","https://openalex.org/W3156482783","https://openalex.org/W3158868742","https://openalex.org/W3165414213","https://openalex.org/W3168189621","https://openalex.org/W3175801695","https://openalex.org/W3183020242","https://openalex.org/W3193861087","https://openalex.org/W3198217776","https://openalex.org/W3210331473","https://openalex.org/W3211402536","https://openalex.org/W3217284213","https://openalex.org/W4200253063","https://openalex.org/W4205500224","https://openalex.org/W4205883408","https://openalex.org/W4205899444","https://openalex.org/W4206447491","https://openalex.org/W4206718607","https://openalex.org/W4225819675","https://openalex.org/W4231254854","https://openalex.org/W4246271082","https://openalex.org/W4255156463","https://openalex.org/W6756216553","https://openalex.org/W6769589523","https://openalex.org/W6777377547","https://openalex.org/W6794584276","https://openalex.org/W6798625203","https://openalex.org/W6806009901","https://openalex.org/W6806757154","https://openalex.org/W6813094581","https://openalex.org/W6836575638"],"related_works":["https://openalex.org/W2152933096","https://openalex.org/W2146211839","https://openalex.org/W2072067873","https://openalex.org/W4307501484","https://openalex.org/W4200166313","https://openalex.org/W2898595765","https://openalex.org/W2006763720","https://openalex.org/W2120850582","https://openalex.org/W2228293239","https://openalex.org/W2108103746"],"abstract_inverted_index":{"The":[0],"network":[1,109],"approach":[2],"is":[3,39],"quickly":[4],"becoming":[5],"a":[6],"fundamental":[7,136],"building":[8],"block":[9],"of":[10,18,24,30,80,82,126,129,138,146,154,163],"computational":[11],"methods":[12,133],"aiming":[13],"at":[14],"elucidating":[15],"the":[16,28,44,73,78,127,139,144,150,161],"mechanism":[17],"action":[19,81],"(MoA)":[20],"and":[21,32,49,84,95,121,157,172],"therapeutic":[22],"effect":[23,29],"drugs.":[25],"By":[26],"modeling":[27],"drugs":[31,83,99],"diseases":[33],"on":[34],"different":[35],"biological":[36,60,171],"networks,":[37],"it":[38],"possible":[40,178],"to":[41,71,76,91,96,117,122,175],"better":[42],"explain":[43],"interplay":[45],"between":[46],"disease":[47,102],"perturbations":[48],"drug":[50,56,140,148,155,158,181],"targets":[51],"as":[52,54],"well":[53],"how":[55],"compounds":[57,156],"induce":[58],"favorable":[59],"responses":[61],"and/or":[62],"adverse":[63],"effects.":[64],"Omics":[65],"technologies":[66],"have":[67],"been":[68],"extensively":[69],"used":[70,116],"generate":[72],"data":[74,87,110],"needed":[75],"study":[77,97,118],"mechanisms":[79],"diseases.":[85,131,164],"These":[86,132],"are":[88,114],"often":[89],"exploited":[90],"define":[92],"condition-specific":[93],"networks":[94,174],"whether":[98],"can":[100,134],"reverse":[101],"perturbations.":[103],"In":[104],"this":[105],"review,":[106],"we":[107],"describe":[108],"mining":[111],"algorithms":[112],"that":[113],"commonly":[115],"drug's":[119],"MoA":[120],"improve":[123],"our":[124],"understanding":[125],"basis":[128],"chronic":[130],"support":[135],"stages":[137],"development":[141],"process,":[142],"including":[143],"identification":[145],"putative":[147],"targets,":[149],"in":[151],"silico":[152],"screening":[153],"combinations":[159],"for":[160,177,183],"treatment":[162],"We":[165],"also":[166],"discuss":[167],"recent":[168],"studies":[169],"using":[170],"omics-driven":[173],"search":[176],"repurposed":[179],"FDA-approved":[180],"treatments":[182],"SARS-CoV-2":[184],"infections":[185],"(COVID-19).":[186]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
