{"id":"https://openalex.org/W4283584023","doi":"https://doi.org/10.1093/bib/bbac218","title":"BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria","display_name":"BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria","publication_year":2022,"publication_date":"2022-06-26","ids":{"openalex":"https://openalex.org/W4283584023","doi":"https://doi.org/10.1093/bib/bbac218","pmid":"https://pubmed.ncbi.nlm.nih.gov/35753697"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac218","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac218/45016788/bbac218.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac218/45016788/bbac218.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076993536","display_name":"Robson Parmezan Bonidia","orcid":"https://orcid.org/0000-0003-4975-7867"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Robson P Bonidia","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089017394","display_name":"Anderson P. Avila-Santos","orcid":"https://orcid.org/0000-0002-6791-0768"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I137479271","display_name":"Helmholtz Centre for Environmental Research","ror":"https://ror.org/000h6jb29","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I137479271"]}],"countries":["BR","DE"],"is_corresponding":false,"raw_author_name":"Anderson P Avila Santos","raw_affiliation_strings":["Department of Environmental Microbiology , Helmholtz Centre for Environmental Research-UFZ GmbH, Leipzig, Saxony , Germany","Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Microbiology , Helmholtz Centre for Environmental Research-UFZ GmbH, Leipzig, Saxony , Germany","institution_ids":["https://openalex.org/I137479271"]},{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072023915","display_name":"Breno L. S. de Almeida","orcid":"https://orcid.org/0000-0002-2041-9170"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Breno L S de Almeida","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter F Stadler","raw_affiliation_strings":["Department of Computer Science and Interdisciplinary Center of Bioinformatics , University of Leipzig, Leipzig, Saxony , Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Interdisciplinary Center of Bioinformatics , University of Leipzig, Leipzig, Saxony , Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024421285","display_name":"Ulisses Nunes da Rocha","orcid":"https://orcid.org/0000-0001-6972-6692"},"institutions":[{"id":"https://openalex.org/I137479271","display_name":"Helmholtz Centre for Environmental Research","ror":"https://ror.org/000h6jb29","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I137479271"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ulisses N da Rocha","raw_affiliation_strings":["Department of Environmental Microbiology , Helmholtz Centre for Environmental Research-UFZ GmbH, Leipzig, Saxony , Germany"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Microbiology , Helmholtz Centre for Environmental Research-UFZ GmbH, Leipzig, Saxony , Germany","institution_ids":["https://openalex.org/I137479271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088676977","display_name":"Danilo Sipoli Sanches","orcid":"https://orcid.org/0000-0002-8972-5221"},"institutions":[{"id":"https://openalex.org/I1283613182","display_name":"Universidade Tecnol\u00f3gica Federal do Paran\u00e1","ror":"https://ror.org/002v2kq79","country_code":"BR","type":"education","lineage":["https://openalex.org/I1283613182"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Danilo S Sanches","raw_affiliation_strings":["Department of Computer Science , Federal University of Technology - Paran\u00e1, UTFPR, Corn\u00e9lio Proc\u00f3pio 86300-000 , Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science , Federal University of Technology - Paran\u00e1, UTFPR, Corn\u00e9lio Proc\u00f3pio 86300-000 , Brazil","institution_ids":["https://openalex.org/I1283613182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079499583","display_name":"Andr\u00e9 C. P. L. F. de Carvalho","orcid":"https://orcid.org/0000-0002-4765-6459"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 C P L F de Carvalho","raw_affiliation_strings":["Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil"],"affiliations":[{"raw_affiliation_string":"Institute of Mathematics and Computer Sciences , University of S\u00e3o Paulo, S\u00e3o Carlos 13566-590 , Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5024421285","https://openalex.org/A5076993536"],"corresponding_institution_ids":["https://openalex.org/I137479271","https://openalex.org/I17974374"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":3275,"currency":"EUR","value_usd":3532},"fwci":2.4303,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.8985286,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.7154325246810913},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5364407300949097},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.5313817858695984},{"id":"https://openalex.org/keywords/feature-engineering","display_name":"Feature engineering","score":0.4625737965106964},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42499056458473206},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3974737823009491},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24132293462753296},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10959124565124512},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.06390872597694397},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.054810792207717896}],"concepts":[{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.7154325246810913},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5364407300949097},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.5313817858695984},{"id":"https://openalex.org/C2778827112","wikidata":"https://www.wikidata.org/wiki/Q22245680","display_name":"Feature engineering","level":3,"score":0.4625737965106964},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42499056458473206},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3974737823009491},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24132293462753296},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10959124565124512},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.06390872597694397},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.054810792207717896},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac218","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac218/45016788/bbac218.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35753697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35753697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9294424","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9294424","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac218","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac218","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac218/45016788/bbac218.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1225096374","display_name":null,"funder_award_id":"Finance Code 00","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G1950316668","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G2459885373","display_name":null,"funder_award_id":"#2021/08561-8","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G2475848412","display_name":null,"funder_award_id":"Finance Code 001,","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G2486662831","display_name":null,"funder_award_id":"2013/07375-","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G2744736720","display_name":null,"funder_award_id":"13/07375-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3588178745","display_name":null,"funder_award_id":"#2013/07375-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G3883789297","display_name":null,"funder_award_id":"Code 00","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G390121578","display_name":null,"funder_award_id":"2013/07375-0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3938906640","display_name":null,"funder_award_id":"(CAPES)","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4332196409","display_name":null,"funder_award_id":"Finance_Code_001","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4600047395","display_name":null,"funder_award_id":"FAPESP","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5696276328","display_name":null,"funder_award_id":"Finance","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5990746028","display_name":null,"funder_award_id":"2013/07375-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6438247056","display_name":null,"funder_award_id":"2021/","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G6669552033","display_name":null,"funder_award_id":"2013/07375-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6939682987","display_name":null,"funder_award_id":"13/07375-0","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8837013128","display_name":null,"funder_award_id":"Code 0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G963174003","display_name":null,"funder_award_id":"de Aperfei\u00e7","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320323339","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283584023.pdf","grobid_xml":"https://content.openalex.org/works/W4283584023.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1494484168","https://openalex.org/W1975238322","https://openalex.org/W2025282821","https://openalex.org/W2034070267","https://openalex.org/W2038681300","https://openalex.org/W2123525093","https://openalex.org/W2132247880","https://openalex.org/W2140874466","https://openalex.org/W2141152740","https://openalex.org/W2151554678","https://openalex.org/W2156125289","https://openalex.org/W2160257187","https://openalex.org/W2171946922","https://openalex.org/W2268267797","https://openalex.org/W2322646064","https://openalex.org/W2475602767","https://openalex.org/W2532710936","https://openalex.org/W2584335703","https://openalex.org/W2604261407","https://openalex.org/W2618834142","https://openalex.org/W2749836266","https://openalex.org/W2766475335","https://openalex.org/W2768348081","https://openalex.org/W2780186126","https://openalex.org/W2780936345","https://openalex.org/W2805002876","https://openalex.org/W2807674901","https://openalex.org/W2821433317","https://openalex.org/W2886899115","https://openalex.org/W2889525593","https://openalex.org/W2891972329","https://openalex.org/W2893486833","https://openalex.org/W2913972604","https://openalex.org/W2915644957","https://openalex.org/W2921372942","https://openalex.org/W2922048036","https://openalex.org/W2945961787","https://openalex.org/W2955219525","https://openalex.org/W2958863468","https://openalex.org/W2966284335","https://openalex.org/W2967960129","https://openalex.org/W2977715335","https://openalex.org/W2980087523","https://openalex.org/W2981383126","https://openalex.org/W2999850615","https://openalex.org/W2999905431","https://openalex.org/W3006913750","https://openalex.org/W3019119825","https://openalex.org/W3028852288","https://openalex.org/W3045712655","https://openalex.org/W3048927012","https://openalex.org/W3048991675","https://openalex.org/W3085899260","https://openalex.org/W3088621177","https://openalex.org/W3091616824","https://openalex.org/W3094948551","https://openalex.org/W3095979265","https://openalex.org/W3100348855","https://openalex.org/W3108297111","https://openalex.org/W3111496797","https://openalex.org/W3122216490","https://openalex.org/W3123920941","https://openalex.org/W3127469524","https://openalex.org/W3130782122","https://openalex.org/W3131672097","https://openalex.org/W3134163647","https://openalex.org/W3134236590","https://openalex.org/W3160512524","https://openalex.org/W3165725230","https://openalex.org/W3180597373","https://openalex.org/W3182913057","https://openalex.org/W3195010157","https://openalex.org/W3200707343","https://openalex.org/W3203741962","https://openalex.org/W3207382953","https://openalex.org/W3212684988","https://openalex.org/W3216651349","https://openalex.org/W4200510612","https://openalex.org/W4210690417","https://openalex.org/W4212979146","https://openalex.org/W4213246097","https://openalex.org/W4231702432","https://openalex.org/W4236459334","https://openalex.org/W4244895750","https://openalex.org/W4287689466","https://openalex.org/W4289761856","https://openalex.org/W6610017368","https://openalex.org/W6728482755","https://openalex.org/W6745609711","https://openalex.org/W6753146606","https://openalex.org/W6754183330","https://openalex.org/W6759616423","https://openalex.org/W6773408428","https://openalex.org/W6781843677","https://openalex.org/W6781905506","https://openalex.org/W6784660673","https://openalex.org/W6801659353"],"related_works":["https://openalex.org/W2050457088","https://openalex.org/W2354441856","https://openalex.org/W4327971719","https://openalex.org/W4398232961","https://openalex.org/W2750075801","https://openalex.org/W3164948662","https://openalex.org/W4400413234","https://openalex.org/W3153597579","https://openalex.org/W4394398790","https://openalex.org/W4399455186"],"abstract_inverted_index":{"Recent":[0],"technological":[1],"advances":[2,58],"have":[3],"led":[4],"to":[5,32,43,85,106,291],"an":[6,176],"exponential":[7],"expansion":[8],"of":[9,15,29,141,203,248,253,260,264,303],"biological":[10,86,186],"sequence":[11,187],"data":[12,87],"and":[13,38,54,62,79,91,102,139,149,155,182,193,201,226,229,234,257,270,288,307],"extraction":[14,225],"meaningful":[16],"information":[17],"through":[18],"Machine":[19],"Learning":[20],"(ML)":[21],"algorithms.":[22],"This":[23,114],"knowledge":[24],"has":[25,213],"improved":[26],"the":[27,133,190,195,204,249,261,292,301],"understanding":[28],"mechanisms":[30],"related":[31],"several":[33],"fatal":[34],"diseases,":[35],"e.g.":[36],"Cancer":[37],"coronavirus":[39,52],"disease":[40],"2019,":[41],"helping":[42],"develop":[44],"innovative":[45],"solutions,":[46],"such":[47,71],"as":[48,72,117],"CRISPR-based":[49],"gene":[50],"editing,":[51],"vaccine":[53],"precision":[55],"medicine.":[56],"These":[57],"benefit":[59],"our":[60],"society":[61],"economy,":[63],"directly":[64],"impacting":[65],"people's":[66],"lives":[67],"in":[68,129,242,266],"various":[69],"areas,":[70],"health":[73],"care,":[74],"drug":[75],"discovery,":[76],"forensic":[77],"analysis":[78],"food":[80],"processing.":[81],"Nevertheless,":[82],"ML-based":[83,127],"approaches":[84],"require":[88],"representative,":[89],"quantitative":[90],"informative":[92,183],"features.":[93,143],"Many":[94],"ML":[95,146,178,198,210],"algorithms":[96],"can":[97,296],"handle":[98],"only":[99],"numerical":[100,111,181],"data,":[101],"therefore":[103],"sequences":[104],"need":[105],"be":[107],"translated":[108],"into":[109,217],"a":[110,121,169],"feature":[112,118,134,196,222,304],"vector.":[113],"process,":[115],"known":[116],"extraction,":[119],"is":[120,279,315],"fundamental":[122],"step":[123],"for":[124],"developing":[125],"high-quality":[126],"models":[128],"bioinformatics,":[130],"by":[131],"allowing":[132],"engineering":[135,223,305],"stage,":[136],"with":[137,164,282],"design":[138],"selection":[140,148,227],"suitable":[142],"Feature":[144],"engineering,":[145],"algorithm":[147],"hyperparameter":[150],"tuning":[151,202,236],"are":[152],"often":[153],"manual":[154],"time-consuming":[156],"processes,":[157],"requiring":[158],"extensive":[159],"domain":[160],"knowledge.":[161],"To":[162,273],"deal":[163],"this":[165],"problem,":[166],"we":[167],"present":[168],"new":[170,298],"package:":[171],"BioAutoML.":[172],"BioAutoML":[173,212,241,275,295,314],"automatically":[174],"runs":[175],"end-to-end":[177],"pipeline,":[179],"extracting":[180],"features":[184],"from":[185],"databases,":[188],"using":[189,208],"MathFeature":[191],"package,":[192],"automating":[194],"selection,":[197],"algorithm(s)":[199,206],"recommendation":[200,233],"selected":[205],"hyperparameters,":[207],"Automated":[209],"(AutoML).":[211],"two":[214,243,283],"components,":[215],"divided":[216],"four":[218],"modules:":[219],"(1)":[220],"automated":[221],"(feature":[224],"modules)":[228],"(2)":[230],"Metalearning":[231],"(algorithm":[232],"hyper-parameter":[235],"modules).":[237],"We":[238],"experimentally":[239,280],"evaluate":[240],"different":[244],"scenarios:":[245],"(i)":[246],"prediction":[247,259],"three":[250],"main":[251],"classes":[252],"noncoding":[254],"RNAs":[255],"(ncRNAs)":[256],"(ii)":[258],"eight":[262],"categories":[263],"ncRNAs":[265],"bacteria,":[267],"including":[268],"housekeeping":[269],"regulatory":[271],"types.":[272],"assess":[274],"predictive":[276,312],"performance,":[277],"it":[278],"compared":[281],"other":[284],"AutoML":[285],"tools":[286],"(RECIPE":[287],"TPOT).":[289],"According":[290],"experimental":[293],"results,":[294],"accelerate":[297],"studies,":[299],"reducing":[300],"cost":[302],"processing":[306],"either":[308],"keeping":[309],"or":[310],"improving":[311],"performance.":[313],"freely":[316],"available":[317],"at":[318],"https://github.com/Bonidia/BioAutoML.":[319]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
