{"id":"https://openalex.org/W4283276269","doi":"https://doi.org/10.1093/bib/bbac216","title":"Evaluating hierarchical machine learning approaches to classify biological databases","display_name":"Evaluating hierarchical machine learning approaches to classify biological databases","publication_year":2022,"publication_date":"2022-05-11","ids":{"openalex":"https://openalex.org/W4283276269","doi":"https://doi.org/10.1093/bib/bbac216","pmid":"https://pubmed.ncbi.nlm.nih.gov/35724625"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac216","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bib/bbac216","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041425614","display_name":"P\u00e2mela Marinho Rezende","orcid":null},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I1343180700","display_name":"Intel (United States)","ror":"https://ror.org/01ek73717","country_code":"US","type":"company","lineage":["https://openalex.org/I1343180700"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR","US"],"is_corresponding":true,"raw_author_name":"P\u00e2mela M Rezende","raw_affiliation_strings":["Instituto Ren\u00e9 Rachou, Funda\u00e7\u00e3o Oswaldo Cruz","Stilingue Intelig\u00eancia Artificial","Universidade Federal de Minas Gerais"],"affiliations":[{"raw_affiliation_string":"Instituto Ren\u00e9 Rachou, Funda\u00e7\u00e3o Oswaldo Cruz","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Stilingue Intelig\u00eancia Artificial","institution_ids":["https://openalex.org/I1343180700"]},{"raw_affiliation_string":"Universidade Federal de Minas Gerais","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039730752","display_name":"Joicymara S. Xavier","orcid":"https://orcid.org/0000-0002-4649-6270"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]},{"id":"https://openalex.org/I4210109820","display_name":"Instituto de Ciencias Agrarias","ror":"https://ror.org/01q9drc95","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210109820"]},{"id":"https://openalex.org/I4210118133","display_name":"Universidade Federal dos Vales do Jequitinhonha e Mucuri","ror":"https://ror.org/02gen2282","country_code":"BR","type":"education","lineage":["https://openalex.org/I4210118133"]},{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR","ES"],"is_corresponding":false,"raw_author_name":"Joicymara S Xavier","raw_affiliation_strings":["Institute of Agricultural Sciences, Universidade Federal dos Vales do Jequitinhonha e Mucuri","Instituto Ren\u00e9 Rachou, Funda\u00e7\u00e3o Oswaldo Cruz","Universidade Federal de Minas Gerais"],"affiliations":[{"raw_affiliation_string":"Institute of Agricultural Sciences, Universidade Federal dos Vales do Jequitinhonha e Mucuri","institution_ids":["https://openalex.org/I4210118133","https://openalex.org/I4210109820"]},{"raw_affiliation_string":"Instituto Ren\u00e9 Rachou, Funda\u00e7\u00e3o Oswaldo Cruz","institution_ids":["https://openalex.org/I52325"]},{"raw_affiliation_string":"Universidade Federal de Minas Gerais","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091903225","display_name":"David B. Ascher","orcid":"https://orcid.org/0000-0003-2948-2413"},"institutions":[{"id":"https://openalex.org/I142471025","display_name":"Baker Heart and Diabetes Institute","ror":"https://ror.org/03rke0285","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I142471025"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David B Ascher","raw_affiliation_strings":["Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute","School of Chemistry and Molecular Biosciences, University of Queensland","Systems and Computational Biology, Bio 21 Institute, University of Melbourne"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute","institution_ids":["https://openalex.org/I142471025"]},{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, University of Queensland","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"Systems and Computational Biology, Bio 21 Institute, University of Melbourne","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080871791","display_name":"Gabriel da Rocha Fernandes","orcid":"https://orcid.org/0000-0002-4897-8521"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Gabriel R Fernandes","raw_affiliation_strings":["Instituto Ren\u00e9 Rachou, Funda\u00e7\u00e3o Oswaldo Cruz"],"affiliations":[{"raw_affiliation_string":"Instituto Ren\u00e9 Rachou, Funda\u00e7\u00e3o Oswaldo Cruz","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071950872","display_name":"Douglas E. V. Pires","orcid":"https://orcid.org/0000-0002-3004-2119"},"institutions":[{"id":"https://openalex.org/I142471025","display_name":"Baker Heart and Diabetes Institute","ror":"https://ror.org/03rke0285","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I142471025"]},{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Douglas E V Pires","raw_affiliation_strings":["Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute","School of Computing and Information Systems, University of Melbourne","Systems and Computational Biology, Bio 21 Institute, University of Melbourne"],"affiliations":[{"raw_affiliation_string":"Computational Biology and Clinical Informatics, Baker Heart and Diabetes Institute","institution_ids":["https://openalex.org/I142471025"]},{"raw_affiliation_string":"School of Computing and Information Systems, University of Melbourne","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Systems and Computational Biology, Bio 21 Institute, University of Melbourne","institution_ids":["https://openalex.org/I165779595"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5041425614"],"corresponding_institution_ids":["https://openalex.org/I110200422","https://openalex.org/I1343180700","https://openalex.org/I52325"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.4756,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.81743003,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7811870574951172},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.6450618505477905},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5662682056427002},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5507475137710571},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5308051109313965},{"id":"https://openalex.org/keywords/hierarchical-database-model","display_name":"Hierarchical database model","score":0.5167864561080933},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4970879852771759},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.46237680315971375},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.44497150182724},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4404633939266205},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4349532127380371},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4285432994365692},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.08045786619186401}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7811870574951172},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.6450618505477905},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5662682056427002},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5507475137710571},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5308051109313965},{"id":"https://openalex.org/C144986985","wikidata":"https://www.wikidata.org/wiki/Q871236","display_name":"Hierarchical database model","level":2,"score":0.5167864561080933},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4970879852771759},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.46237680315971375},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.44497150182724},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4404633939266205},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4349532127380371},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4285432994365692},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.08045786619186401},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbac216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac216","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35724625","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35724625","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:repositorio.ufmg.br:1843/53447","is_oa":true,"landing_page_url":"http://hdl.handle.net/1843/53447","pdf_url":"https://repositorio.ufmg.br/bitstreams/8b6c0084-e540-4a88-ab59-0de384059659/download","source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UFMG","raw_type":"info:eu-repo/semantics/doctoralThesis"},{"id":"pmh:oai:arca.fiocruz.br:icict/53979","is_oa":false,"landing_page_url":"https://arca.fiocruz.br/handle/icict/53979","pdf_url":null,"source":{"id":"https://openalex.org/S7407055450","display_name":"Arca - Reposit\u00f3rio Institucional da Fiocruz","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9310517","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9310517","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac216","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G6454673195","display_name":null,"funder_award_id":"GNT1174405","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"},{"id":"https://openalex.org/G8744266013","display_name":null,"funder_award_id":"MR/M026302/1","funder_id":"https://openalex.org/F4320322980","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W55848811","https://openalex.org/W1571024744","https://openalex.org/W1593573895","https://openalex.org/W1971650367","https://openalex.org/W1980179845","https://openalex.org/W1988925586","https://openalex.org/W1994410331","https://openalex.org/W2018661561","https://openalex.org/W2064488723","https://openalex.org/W2085277871","https://openalex.org/W2091922579","https://openalex.org/W2096679774","https://openalex.org/W2101234009","https://openalex.org/W2103296919","https://openalex.org/W2103459989","https://openalex.org/W2108067237","https://openalex.org/W2115610681","https://openalex.org/W2117814571","https://openalex.org/W2123400824","https://openalex.org/W2128687617","https://openalex.org/W2141885858","https://openalex.org/W2142678031","https://openalex.org/W2148143831","https://openalex.org/W2148768886","https://openalex.org/W2150766729","https://openalex.org/W2151350595","https://openalex.org/W2154197083","https://openalex.org/W2158057251","https://openalex.org/W2159482845","https://openalex.org/W2179988958","https://openalex.org/W2219959112","https://openalex.org/W2226402862","https://openalex.org/W2279856703","https://openalex.org/W2346940354","https://openalex.org/W2475308546","https://openalex.org/W2520368209","https://openalex.org/W2579533542","https://openalex.org/W2593867025","https://openalex.org/W2603346833","https://openalex.org/W2605361745","https://openalex.org/W2610313513","https://openalex.org/W2732415759","https://openalex.org/W2735332739","https://openalex.org/W2758005814","https://openalex.org/W2759474451","https://openalex.org/W2793168264","https://openalex.org/W2800333284","https://openalex.org/W2803713584","https://openalex.org/W2889019390","https://openalex.org/W2900490197","https://openalex.org/W2920578945","https://openalex.org/W2951002538","https://openalex.org/W2962862931","https://openalex.org/W2980372463","https://openalex.org/W2999481648","https://openalex.org/W3028862763","https://openalex.org/W3092613928","https://openalex.org/W3096305909","https://openalex.org/W3133711058","https://openalex.org/W3207806256","https://openalex.org/W3207928532","https://openalex.org/W4252166161","https://openalex.org/W4293713156","https://openalex.org/W6633893416","https://openalex.org/W6635465433","https://openalex.org/W6675354045","https://openalex.org/W6726972653","https://openalex.org/W6737947904"],"related_works":["https://openalex.org/W2365264209","https://openalex.org/W2509431957","https://openalex.org/W2026999166","https://openalex.org/W3020924181","https://openalex.org/W2885881666","https://openalex.org/W1992685502","https://openalex.org/W4211007821","https://openalex.org/W2174924318","https://openalex.org/W2942485139","https://openalex.org/W4205449067"],"abstract_inverted_index":{"The":[0,149],"rate":[1],"of":[2,17,28,36,56,127,155,171],"biological":[3,29],"data":[4,40,46,77,157],"generation":[5,27],"has":[6,13],"increased":[7],"dramatically":[8],"in":[9,51],"recent":[10],"years,":[11],"which":[12,190],"driven":[14],"the":[15,26,32,99,125,169],"importance":[16],"databases":[18],"as":[19,160],"a":[20,112,137,186],"resource":[21],"to":[22,61,74,141,179],"guide":[23,168],"innovation":[24],"and":[25,34,64,67,87,107,131,147,163,196],"insights.":[30],"Given":[31],"complexity":[33],"scale":[35],"these":[37],"databases,":[38],"automatic":[39],"classification":[41,69,114,173,188],"is":[42],"often":[43,49],"required.":[44],"Biological":[45],"sets":[47],"are":[48],"hierarchical":[50,76,109,144,156,187],"nature,":[52],"with":[53,136],"varying":[54],"degrees":[55],"complexity,":[57],"imposing":[58],"different":[59,143,153],"challenges":[60],"train,":[62],"test":[63],"validate":[65],"accurate":[66],"generalizable":[68],"models.":[70],"While":[71],"some":[72],"approaches":[73,97,135],"classify":[75],"have":[78,89,122],"been":[79,90],"proposed,":[80],"no":[81],"guidelines":[82,178],"regarding":[83],"their":[84],"utility,":[85],"applicability":[86],"limitations":[88],"explored":[91],"or":[92,105],"implemented.":[93],"These":[94],"include":[95],"'Local'":[96],"considering":[98],"hierarchy,":[100],"building":[101],"models":[102],"per":[103,129,133],"level":[104],"node,":[106],"'Global'":[108,138],"classification,":[110],"using":[111],"flat":[113],"approach.":[115],"To":[116],"fill":[117],"this":[118,181],"gap,":[119],"here":[120],"we":[121,176],"systematically":[123],"contrasted":[124],"performance":[126],"'Local":[128,132],"Level'":[130],"Node'":[134],"approach":[139],"applied":[140],"two":[142],"datasets:":[145],"BioLip":[146],"CATH.":[148],"results":[150],"show":[151],"how":[152],"components":[154],"sets,":[158],"such":[159],"variation":[161],"coefficient":[162],"prediction":[164],"by":[165],"depth,":[166],"can":[167],"choice":[170],"appropriate":[172],"schemes.":[174],"Finally,":[175],"provide":[177],"support":[180],"process":[182],"when":[183],"embarking":[184],"on":[185],"task,":[189],"will":[191],"help":[192],"optimize":[193],"computational":[194],"resources":[195],"predictive":[197],"performance.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
