{"id":"https://openalex.org/W4282926909","doi":"https://doi.org/10.1093/bib/bbac214","title":"DeepSCP: utilizing deep learning to boost single-cell proteome coverage","display_name":"DeepSCP: utilizing deep learning to boost single-cell proteome coverage","publication_year":2022,"publication_date":"2022-05-09","ids":{"openalex":"https://openalex.org/W4282926909","doi":"https://doi.org/10.1093/bib/bbac214","pmid":"https://pubmed.ncbi.nlm.nih.gov/35656712"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac214","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac214","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100382540","display_name":"Bing Wang","orcid":"https://orcid.org/0000-0003-0684-2789"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Wang","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","School of Medicine , Southeast University, Nanjing 210009 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]},{"raw_affiliation_string":"School of Medicine , Southeast University, Nanjing 210009 , China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372066","display_name":"Yue Wang","orcid":"https://orcid.org/0000-0002-7670-7673"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402122","display_name":"Yu Chen","orcid":"https://orcid.org/0000-0003-2722-9561"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Chen","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112643275","display_name":"Mengmeng Gao","orcid":"https://orcid.org/0009-0009-4747-4573"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengmeng Gao","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021052166","display_name":"Jie Ren","orcid":"https://orcid.org/0000-0001-6258-8506"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Ren","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069551793","display_name":"Yueshuai Guo","orcid":"https://orcid.org/0000-0002-5950-4591"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueshuai Guo","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076175363","display_name":"Chenghao Situ","orcid":"https://orcid.org/0000-0002-0637-0323"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenghao Situ","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050925267","display_name":"Yaling Qi","orcid":"https://orcid.org/0000-0002-2940-4733"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaling Qi","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003452959","display_name":"Hui Zhu","orcid":"https://orcid.org/0000-0003-1326-3996"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Zhu","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380408","display_name":"Yan Li","orcid":"https://orcid.org/0000-0003-0420-4222"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Li","raw_affiliation_strings":["Department of Clinical Laboratory , Sir Run Run Hospital, Nanjing Medical University, Nanjing 211100 , China"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory , Sir Run Run Hospital, Nanjing Medical University, Nanjing 211100 , China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061220138","display_name":"Xuejiang Guo","orcid":"https://orcid.org/0000-0002-0475-5705"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]},{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuejiang Guo","raw_affiliation_strings":["Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","School of Medicine , Southeast University, Nanjing 210009 , China"],"affiliations":[{"raw_affiliation_string":"Department of Histology and Embryology , State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing 211166 , China","institution_ids":["https://openalex.org/I83519826"]},{"raw_affiliation_string":"School of Medicine , Southeast University, Nanjing 210009 , China","institution_ids":["https://openalex.org/I76569877"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5061220138","https://openalex.org/A5100380408"],"corresponding_institution_ids":["https://openalex.org/I76569877","https://openalex.org/I83519826"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.2076,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.75592757,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7764045000076294},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7133572697639465},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5909525752067566},{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.5807788968086243},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.5486508011817932},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5360527038574219},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4228783845901489},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4125574231147766},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21811819076538086},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.188035786151886},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11877509951591492},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07270357012748718}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7764045000076294},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7133572697639465},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5909525752067566},{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.5807788968086243},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.5486508011817932},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5360527038574219},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4228783845901489},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4125574231147766},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21811819076538086},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.188035786151886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11877509951591492},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07270357012748718},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac214","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac214","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35656712","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35656712","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1688500529","display_name":null,"funder_award_id":"2021YFC2700200","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6510415834","display_name":null,"funder_award_id":"82001611","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7811080718","display_name":null,"funder_award_id":"81971439","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8771433943","display_name":null,"funder_award_id":"161037","funder_id":"https://openalex.org/F4320326297","funder_display_name":"Fok Ying Tung Education Foundation"},{"id":"https://openalex.org/G8842509642","display_name":null,"funder_award_id":"32071133","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326297","display_name":"Fok Ying Tung Education Foundation","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W1198650284","https://openalex.org/W1522301498","https://openalex.org/W1968063944","https://openalex.org/W1981593008","https://openalex.org/W1984450835","https://openalex.org/W1986557818","https://openalex.org/W1988096147","https://openalex.org/W2015279401","https://openalex.org/W2028673251","https://openalex.org/W2049627882","https://openalex.org/W2072331539","https://openalex.org/W2096057003","https://openalex.org/W2100828578","https://openalex.org/W2108508103","https://openalex.org/W2141091417","https://openalex.org/W2168925298","https://openalex.org/W2345077773","https://openalex.org/W2510167837","https://openalex.org/W2544360569","https://openalex.org/W2607310450","https://openalex.org/W2768087917","https://openalex.org/W2768348081","https://openalex.org/W2769387903","https://openalex.org/W2775103799","https://openalex.org/W2810978970","https://openalex.org/W2902652978","https://openalex.org/W2922486000","https://openalex.org/W2947763854","https://openalex.org/W2949908578","https://openalex.org/W2951821937","https://openalex.org/W2954945594","https://openalex.org/W2955152582","https://openalex.org/W2968995168","https://openalex.org/W2972334216","https://openalex.org/W2985366299","https://openalex.org/W2991106430","https://openalex.org/W2995378448","https://openalex.org/W2999515666","https://openalex.org/W3013498854","https://openalex.org/W3015750191","https://openalex.org/W3033910294","https://openalex.org/W3035881786","https://openalex.org/W3094657717","https://openalex.org/W3100062533","https://openalex.org/W3113044156","https://openalex.org/W3121536135","https://openalex.org/W3128474010","https://openalex.org/W3131629713","https://openalex.org/W3134829501","https://openalex.org/W3134913640","https://openalex.org/W3136918052","https://openalex.org/W3143381592","https://openalex.org/W3157330827","https://openalex.org/W3159076767","https://openalex.org/W3170290339","https://openalex.org/W3179029691","https://openalex.org/W3179726909","https://openalex.org/W3185245858","https://openalex.org/W3209108209","https://openalex.org/W3209470205","https://openalex.org/W3216944338","https://openalex.org/W4294541781","https://openalex.org/W6631190155","https://openalex.org/W6745609711","https://openalex.org/W6772716043"],"related_works":["https://openalex.org/W3187594710","https://openalex.org/W2109364024","https://openalex.org/W2080856312","https://openalex.org/W2086860678","https://openalex.org/W2337002289","https://openalex.org/W2122805769","https://openalex.org/W2165553666","https://openalex.org/W1614434693","https://openalex.org/W2088324202","https://openalex.org/W2147198186"],"abstract_inverted_index":{"Multiplexed":[0],"single-cell":[1,135,146],"proteomes":[2],"(SCPs)":[3],"quantification":[4],"by":[5,33,62,115],"mass":[6],"spectrometry":[7],"greatly":[8],"improves":[9],"the":[10,64,69,140],"SCP":[11,50,71,98],"coverage.":[12,51],"However,":[13],"it":[14],"still":[15],"suffers":[16],"from":[17],"a":[18,41,54,125],"low":[19],"number":[20],"of":[21,56,58,92,145],"protein":[22],"identifications":[23],"and":[24,74,82,96,113,127,138,143],"there":[25],"is":[26],"much":[27],"room":[28],"to":[29,48],"boost":[30,49,134],"proteins":[31,114],"identification":[32,137],"computational":[34],"methods.":[35,107],"In":[36],"this":[37],"study,":[38],"we":[39],"present":[40],"novel":[42],"framework":[43],"DeepSCP,":[44],"utilizing":[45],"deep":[46,80],"learning":[47,89],"DeepSCP":[52,93,108,131],"constructs":[53],"series":[55],"features":[57],"peptide-spectrum":[59],"matches":[60],"(PSMs)":[61],"predicting":[63],"retention":[65],"time":[66],"based":[67,78],"on":[68,79,94],"multiple":[70],"sample":[72],"sets":[73],"fragment":[75],"ion":[76],"intensities":[77],"learning,":[81],"predicts":[83],"PSM":[84],"labels":[85],"with":[86,104],"an":[87],"optimized-ensemble":[88],"model.":[90],"Evaluation":[91],"public":[95],"in-house":[97],"datasets":[99],"showed":[100],"superior":[101],"performances":[102],"compared":[103],"other":[105],"state-of-the-art":[106],"identified":[109],"more":[110],"confident":[111],"peptides":[112],"controlling":[116],"q-value":[117],"at":[118],"0.01":[119],"using":[120],"target-decoy":[121],"competition":[122],"method.":[123],"As":[124],"convenient":[126],"low-cost":[128],"computing":[129],"framework,":[130],"will":[132],"help":[133],"proteome":[136],"facilitate":[139],"future":[141],"development":[142],"application":[144],"proteomics.":[147]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4}],"updated_date":"2026-02-25T08:12:03.925757","created_date":"2025-10-10T00:00:00"}
