{"id":"https://openalex.org/W4282926473","doi":"https://doi.org/10.1093/bib/bbac199","title":"BETA: a comprehensive benchmark for computational drug\u2013target prediction","display_name":"BETA: a comprehensive benchmark for computational drug\u2013target prediction","publication_year":2022,"publication_date":"2022-05-04","ids":{"openalex":"https://openalex.org/W4282926473","doi":"https://doi.org/10.1093/bib/bbac199","pmid":"https://pubmed.ncbi.nlm.nih.gov/35649342"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac199","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac199/45016870/bbac199.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac199/45016870/bbac199.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019653651","display_name":"Nansu Zong","orcid":"https://orcid.org/0000-0003-0066-9524"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nansu Zong","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":"https://orcid.org/0000-0003-0066-9524","affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369033","display_name":"Ning Li","orcid":"https://orcid.org/0000-0002-6224-1809"},"institutions":[{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ning Li","raw_affiliation_strings":["Center for Structure Biology, Center for Cancer Research, National Cancer Institute , Frederick , MD"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Structure Biology, Center for Cancer Research, National Cancer Institute , Frederick , MD","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003128469","display_name":"Andrew Wen","orcid":"https://orcid.org/0000-0001-9090-8028"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Wen","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089695615","display_name":"Victoria Ngo","orcid":"https://orcid.org/0000-0001-9973-8379"},"institutions":[{"id":"https://openalex.org/I4210160856","display_name":"UC Davis Health","ror":"https://ror.org/05q8kyc69","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210160856"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victoria Ngo","raw_affiliation_strings":["Betty Irene Moore School of Nursing, University of California Davis Health , Sacramento , CA","Stanford Health Policy, Stanford School of Medicine and Freeman Spogli Institute for International Studies , Palo Alto , CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Betty Irene Moore School of Nursing, University of California Davis Health , Sacramento , CA","institution_ids":["https://openalex.org/I4210160856","https://openalex.org/I84218800"]},{"raw_affiliation_string":"Stanford Health Policy, Stanford School of Medicine and Freeman Spogli Institute for International Studies , Palo Alto , CA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100397969","display_name":"Yue Yu","orcid":"https://orcid.org/0000-0002-3900-1217"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yue Yu","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010869663","display_name":"Ming Huang","orcid":"https://orcid.org/0000-0001-7367-3626"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ming Huang","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101209072","display_name":"Shaika Chowdhury","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaika Chowdhury","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073746065","display_name":"Chao Jiang","orcid":"https://orcid.org/0000-0002-0467-6177"},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chao Jiang","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Auburn University , Auburn , AL"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Auburn University , Auburn , AL","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032226587","display_name":"Sunyang Fu","orcid":"https://orcid.org/0000-0003-1691-5179"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunyang Fu","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056312367","display_name":"Richard M. Weinshilboum","orcid":"https://orcid.org/0000-0002-4911-7985"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Weinshilboum","raw_affiliation_strings":["Department of Molecular Pharmacology and Experimental Therapeutics , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Pharmacology and Experimental Therapeutics , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007963072","display_name":"Guoqian Jiang","orcid":"https://orcid.org/0000-0003-2940-0019"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guoqian Jiang","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041860080","display_name":"Lawrence Hunter","orcid":"https://orcid.org/0000-0003-1455-3370"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence Hunter","raw_affiliation_strings":["Department of Pharmacology, University of Colorado Denver , Aurora , CO"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacology, University of Colorado Denver , Aurora , CO","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence and Informatics Research , Mayo Clinic, Rochester , MN","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5019653651"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.5877,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.90759401,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7504845261573792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6530472040176392},{"id":"https://openalex.org/keywords/beta","display_name":"BETA (programming language)","score":0.5110419988632202},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.44732755422592163},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39383071660995483},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3656119704246521},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12625059485435486},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.0774957537651062},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.05944716930389404},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.05740043520927429},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.05362841486930847}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7504845261573792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6530472040176392},{"id":"https://openalex.org/C2776174256","wikidata":"https://www.wikidata.org/wiki/Q830842","display_name":"BETA (programming language)","level":2,"score":0.5110419988632202},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.44732755422592163},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39383071660995483},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3656119704246521},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12625059485435486},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0774957537651062},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.05944716930389404},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.05740043520927429},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.05362841486930847}],"mesh":[{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbac199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac199","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac199/45016870/bbac199.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35649342","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35649342","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:ark:/13030/qt28v7g2wt","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt28v7g2wt","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/28v7g2wt","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings in Bioinformatics, vol 23, iss 4","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9294420","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9294420","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac199","pdf_url":"https://academic.oup.com/bib/article-pdf/23/4/bbac199/45016870/bbac199.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G136636387","display_name":null,"funder_award_id":"K99GM135488","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282926473.pdf"},"referenced_works_count":84,"referenced_works":["https://openalex.org/W135190683","https://openalex.org/W1544009106","https://openalex.org/W1971106435","https://openalex.org/W1975147762","https://openalex.org/W1984084871","https://openalex.org/W1993595811","https://openalex.org/W1995962478","https://openalex.org/W2019707847","https://openalex.org/W2044002635","https://openalex.org/W2057332977","https://openalex.org/W2062584010","https://openalex.org/W2066201825","https://openalex.org/W2079745490","https://openalex.org/W2083045667","https://openalex.org/W2087064593","https://openalex.org/W2089467986","https://openalex.org/W2098425296","https://openalex.org/W2100672820","https://openalex.org/W2101234009","https://openalex.org/W2106029302","https://openalex.org/W2108491719","https://openalex.org/W2108598243","https://openalex.org/W2109991441","https://openalex.org/W2113951828","https://openalex.org/W2117513900","https://openalex.org/W2119412782","https://openalex.org/W2123531184","https://openalex.org/W2127069089","https://openalex.org/W2128245586","https://openalex.org/W2130479394","https://openalex.org/W2135007932","https://openalex.org/W2139736926","https://openalex.org/W2145578524","https://openalex.org/W2148145769","https://openalex.org/W2148797284","https://openalex.org/W2149861759","https://openalex.org/W2153838454","https://openalex.org/W2159482845","https://openalex.org/W2159583324","https://openalex.org/W2162831725","https://openalex.org/W2165428180","https://openalex.org/W2170146596","https://openalex.org/W2183717576","https://openalex.org/W2191030086","https://openalex.org/W2259538443","https://openalex.org/W2318276819","https://openalex.org/W2341574236","https://openalex.org/W2404369708","https://openalex.org/W2419892062","https://openalex.org/W2479004024","https://openalex.org/W2558217333","https://openalex.org/W2607497028","https://openalex.org/W2753953057","https://openalex.org/W2770261575","https://openalex.org/W2770336014","https://openalex.org/W2785947426","https://openalex.org/W2800595743","https://openalex.org/W2896002881","https://openalex.org/W2896646632","https://openalex.org/W2899291554","https://openalex.org/W2900569176","https://openalex.org/W2922229918","https://openalex.org/W2938214930","https://openalex.org/W2939293777","https://openalex.org/W2952522777","https://openalex.org/W2978248631","https://openalex.org/W2989611985","https://openalex.org/W2997418660","https://openalex.org/W3000043291","https://openalex.org/W3039977092","https://openalex.org/W3043379468","https://openalex.org/W3096561213","https://openalex.org/W3102648521","https://openalex.org/W3109916301","https://openalex.org/W3136920819","https://openalex.org/W3158868742","https://openalex.org/W4210702584","https://openalex.org/W4294216483","https://openalex.org/W6675354045","https://openalex.org/W6686420396","https://openalex.org/W6713634263","https://openalex.org/W6775542561","https://openalex.org/W6779863672","https://openalex.org/W7071842115"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"Internal":[0],"validation":[1,170],"is":[2,21],"the":[3,18,192,204,207,214,220,231],"most":[4],"popular":[5],"evaluation":[6,124],"strategy":[7],"used":[8],"for":[9,144,152,217,236],"drug-target":[10],"predictive":[11,40],"models.":[12],"The":[13,195,223],"simple":[14],"random":[15],"shuffling":[16],"in":[17,67,112,164,230],"cross-validation,":[19],"however,":[20],"not":[22],"always":[23],"ideal":[24],"to":[25,46,91,114,202,210],"handle":[26],"large,":[27],"diverse":[28],"and":[29,65,69,108,118,121,137,147,149,169,183,186,239],"copious":[30],"datasets":[31],"as":[32,72,74,227],"it":[33],"could":[34],"potentially":[35],"introduce":[36,85],"bias.":[37],"Hence,":[38],"these":[39],"models":[41],"cannot":[42],"be":[43],"comprehensively":[44],"evaluated":[45],"provide":[47],"insight":[48],"into":[49],"their":[50],"general":[51],"performance":[52],"on":[53,77,141],"a":[54,86,155,228],"variety":[55],"of":[56,60,63,103,157,161,206,213,233],"use-cases":[57],"(e.g.":[58],"permutations":[59],"different":[61,78,134],"levels":[62],"connectiveness":[64],"categories":[66],"drug":[68,138,150,237],"target":[70,136,240],"space,":[71],"well":[73],"validations":[75],"based":[76,140],"data":[79,179],"sources).":[80],"In":[81],"this":[82,93],"work,":[83],"we":[84],"benchmark,":[87],"BETA,":[88],"that":[89,126],"aims":[90],"address":[92],"gap":[94],"by":[95],"(i)":[96],"providing":[97],"an":[98],"extensive":[99],"multipartite":[100],"network":[101],"consisting":[102],"0.97":[104],"million":[105,110,116],"biomedical":[106],"concepts":[107],"8.5":[109],"associations,":[111],"addition":[113],"62":[115],"drug-drug":[117],"protein-protein":[119],"similarities":[120],"(ii)":[122],"presenting":[123],"strategies":[125,235],"reflect":[127],"seven":[128,158],"cases":[129,198],"(i.e.":[130],"general,":[131],"screening":[132,139],"with":[133],"connectivity,":[135],"categories,":[142],"searching":[143],"specific":[145,153],"drugs":[146],"targets":[148],"repurposing":[151,238],"diseases),":[154],"total":[156],"Tests":[159],"(consisting":[160],"344":[162],"Tasks":[163],"total)":[165],"across":[166,190],"multiple":[167],"sampling":[168],"strategies.":[171],"Six":[172],"state-of-the-art":[173],"methods":[174,216],"covering":[175],"two":[176],"broad":[177],"input":[178],"types":[180],"(chemical":[181],"structure-":[182],"gene":[184],"sequence-based":[185],"network-based)":[187],"were":[188],"tested":[189,215],"all":[191],"developed":[193],"Tasks.":[194],"best-worst":[196],"performing":[197],"have":[199],"been":[200],"analyzed":[201],"demonstrate":[203],"ability":[205],"proposed":[208],"benchmark":[209,221,229],"identify":[211],"limitations":[212],"running":[218],"over":[219],"tasks.":[222],"results":[224],"highlight":[225],"BETA":[226],"selection":[232],"computational":[234],"discovery.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
