{"id":"https://openalex.org/W4280539530","doi":"https://doi.org/10.1093/bib/bbac192","title":"HLAncPred: a method for predicting promiscuous non-classical HLA binding sites","display_name":"HLAncPred: a method for predicting promiscuous non-classical HLA binding sites","publication_year":2022,"publication_date":"2022-04-27","ids":{"openalex":"https://openalex.org/W4280539530","doi":"https://doi.org/10.1093/bib/bbac192","pmid":"https://pubmed.ncbi.nlm.nih.gov/35580839"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac192","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac192","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054096262","display_name":"Anjali Dhall","orcid":"https://orcid.org/0000-0002-0400-2084"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anjali Dhall","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology , Okhla Phase 3, New Delhi-110020, India"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology , Okhla Phase 3, New Delhi-110020, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048158238","display_name":"Sumeet Patiyal","orcid":"https://orcid.org/0000-0003-1358-292X"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sumeet Patiyal","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology , Okhla Phase 3, New Delhi-110020, India"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology , Okhla Phase 3, New Delhi-110020, India","institution_ids":["https://openalex.org/I119939252"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051938893","display_name":"Gajendra P. S. Raghava","orcid":"https://orcid.org/0000-0002-8902-2876"},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Gajendra P S Raghava","raw_affiliation_strings":["Department of Computational Biology, Indraprastha Institute of Information Technology , Okhla Phase 3, New Delhi-110020, India"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Indraprastha Institute of Information Technology , Okhla Phase 3, New Delhi-110020, India","institution_ids":["https://openalex.org/I119939252"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5051938893"],"corresponding_institution_ids":["https://openalex.org/I119939252"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.2999,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.79088291,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.8495442867279053},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5782977342605591},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.49181655049324036},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.4745669662952423},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42951256036758423},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39733925461769104},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3528870642185211},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3430008292198181},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3416166305541992},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.31363117694854736},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26478254795074463},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22054466605186462}],"concepts":[{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.8495442867279053},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5782977342605591},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.49181655049324036},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.4745669662952423},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42951256036758423},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39733925461769104},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3528870642185211},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3430008292198181},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3416166305541992},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.31363117694854736},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26478254795074463},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22054466605186462}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059951","descriptor_name":"HLA-G Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D059951","descriptor_name":"HLA-G Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D059951","descriptor_name":"HLA-G Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac192","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac192","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35580839","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35580839","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5699999928474426,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1778899861","https://openalex.org/W1980662641","https://openalex.org/W1981158549","https://openalex.org/W1986672594","https://openalex.org/W1989166597","https://openalex.org/W1991785385","https://openalex.org/W2009003919","https://openalex.org/W2014208459","https://openalex.org/W2018897975","https://openalex.org/W2031509003","https://openalex.org/W2036173589","https://openalex.org/W2052234596","https://openalex.org/W2055707696","https://openalex.org/W2063023195","https://openalex.org/W2069904417","https://openalex.org/W2072617228","https://openalex.org/W2075462420","https://openalex.org/W2079482424","https://openalex.org/W2090636839","https://openalex.org/W2096428863","https://openalex.org/W2101234009","https://openalex.org/W2117645719","https://openalex.org/W2119345671","https://openalex.org/W2120772351","https://openalex.org/W2129577579","https://openalex.org/W2131424931","https://openalex.org/W2132609988","https://openalex.org/W2142636897","https://openalex.org/W2148568906","https://openalex.org/W2154521168","https://openalex.org/W2158266834","https://openalex.org/W2161710954","https://openalex.org/W2411760385","https://openalex.org/W2462539656","https://openalex.org/W2513660241","https://openalex.org/W2516779495","https://openalex.org/W2549534497","https://openalex.org/W2609377425","https://openalex.org/W2738925124","https://openalex.org/W2750487285","https://openalex.org/W2789413944","https://openalex.org/W2937561625","https://openalex.org/W2953065444","https://openalex.org/W2965413325","https://openalex.org/W2967717440","https://openalex.org/W2979882137","https://openalex.org/W2987146430","https://openalex.org/W2987352852","https://openalex.org/W3028792253","https://openalex.org/W3035873961","https://openalex.org/W3042910002","https://openalex.org/W3046997986","https://openalex.org/W3082508527","https://openalex.org/W3092443176","https://openalex.org/W3093676084","https://openalex.org/W3120046290","https://openalex.org/W3122375914","https://openalex.org/W3138394257","https://openalex.org/W3142407506","https://openalex.org/W3172503687","https://openalex.org/W3198814330","https://openalex.org/W4249816251","https://openalex.org/W6675354045","https://openalex.org/W6714956344","https://openalex.org/W6737071602","https://openalex.org/W6761383852","https://openalex.org/W6770113330","https://openalex.org/W6788039569","https://openalex.org/W6796989823"],"related_works":["https://openalex.org/W4211132779","https://openalex.org/W1963282068","https://openalex.org/W2955300884","https://openalex.org/W1972945471","https://openalex.org/W2357948923","https://openalex.org/W2144422987","https://openalex.org/W4313472242","https://openalex.org/W1960746255","https://openalex.org/W4382066202","https://openalex.org/W2805640416"],"abstract_inverted_index":{"Human":[0],"leukocyte":[1],"antigens":[2],"(HLA)":[3],"regulate":[4],"various":[5],"innate":[6],"and":[7,11,37,110,147,155,170,259],"adaptive":[8],"immune":[9],"responses":[10],"play":[12],"a":[13,236,254],"crucial":[14],"immunomodulatory":[15],"role.":[16],"Recent":[17],"studies":[18],"revealed":[19],"that":[20,232],"non-classical":[21,70,168,195,249],"HLA-(HLA-E":[22],"&":[23],"HLA-G)":[24],"based":[25],"immunotherapies":[26],"have":[27,47,62,92,159,187],"many":[28],"advantages":[29],"over":[30],"traditional":[31],"HLA-based":[32],"immunotherapy,":[33],"particularly":[34],"against":[35],"cancer":[36],"COVID-19":[38],"infection.":[39],"In":[40,58],"the":[41,52,76,88,106,118,142,150,161,165,172,175,184,193,200,215,219,226,244,248],"last":[42],"two":[43],"decades,":[44],"several":[45],"methods":[46,67],"been":[48,63],"developed":[49,93,163,177,253],"to":[50,65,75,86,182,224,235],"predict":[51,243],"binders":[53,100,228,246],"of":[54,78,101,121,145,203,206,214,221,239],"classical":[55],"HLA":[56,71,103,169,196,240,250],"alleles.":[57,104,241],"contrast,":[59],"limited":[60],"attempts":[61],"made":[64],"develop":[66],"for":[68,98,132,153,167,191,247],"predicting":[69,99,192],"binding":[72,197],"peptides,":[73],"due":[74],"scarcity":[77],"sufficient":[79],"experimental":[80],"data.":[81],"Of":[82],"note,":[83],"in":[84,164,178,199,218],"order":[85],"facilitate":[87,183],"scientific":[89],"community,":[90,185],"we":[91,186,252],"an":[94],"artificial":[95],"intelligence-based":[96],"method":[97],"class-Ib":[102],"All":[105],"models":[107,126,140,162,176],"were":[108],"trained":[109],"tested":[111],"on":[112,135,149],"experimentally":[113],"validated":[114,171],"data":[115],"obtained":[116],"from":[117],"recent":[119],"release":[120],"IEDB.":[122],"The":[123],"machine":[124],"learning":[125],"achieved":[127,141],"more":[128],"than":[129],"0.98":[130],"AUC":[131,144],"HLA-G":[133],"alleles":[134],"validation":[136,151],"dataset.":[137],"Similarly,":[138],"our":[139,189],"highest":[143],"0.96":[146],"0.94":[148],"dataset":[152],"HLA-E*01:01":[154],"HLA-E*01:03,":[156],"respectively.":[157],"We":[158],"summarized":[160],"past":[166],"performance":[173],"with":[174],"this":[179],"study.":[180],"Moreover,":[181],"utilized":[188],"tool":[190],"potential":[194],"peptides":[198],"spike":[201],"protein":[202],"different":[204],"variants":[205],"virus":[207],"causing":[208],"COVID-19,":[209],"including":[210],"Omicron":[211],"(B.1.1.529).":[212],"One":[213],"major":[216],"challenges":[217],"field":[220],"immunotherapy":[222],"is":[223],"identify":[225],"promiscuous":[227,245],"or":[229],"antigenic":[230],"regions":[231],"can":[233],"bind":[234],"large":[237],"number":[238],"To":[242],"alleles,":[251],"web":[255],"server":[256],"HLAncPred":[257],"(https://webs.iiitd.edu.in/raghava/hlancpred)":[258],"standalone":[260],"package.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5}],"updated_date":"2026-03-24T08:02:53.985720","created_date":"2025-10-10T00:00:00"}
