{"id":"https://openalex.org/W4281951409","doi":"https://doi.org/10.1093/bib/bbac190","title":"COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning","display_name":"COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning","publication_year":2022,"publication_date":"2022-06-01","ids":{"openalex":"https://openalex.org/W4281951409","doi":"https://doi.org/10.1093/bib/bbac190","pmid":"https://pubmed.ncbi.nlm.nih.gov/35649389"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac190","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac190","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9294427","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043564973","display_name":"Anthony Huffman","orcid":"https://orcid.org/0000-0002-0576-550X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Huffman","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007063951","display_name":"Edison Ong","orcid":"https://orcid.org/0000-0002-5159-414X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edison Ong","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068376728","display_name":"Junguk Hur","orcid":"https://orcid.org/0000-0002-0736-2149"},"institutions":[{"id":"https://openalex.org/I24571045","display_name":"University of North Dakota","ror":"https://ror.org/04a5szx83","country_code":"US","type":"education","lineage":["https://openalex.org/I24571045"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junguk Hur","raw_affiliation_strings":["Department of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks , North Dakota 58202 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks , North Dakota 58202 , USA","institution_ids":["https://openalex.org/I24571045"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017585328","display_name":"Adonis D\u2019Mello","orcid":"https://orcid.org/0000-0001-6995-3617"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adonis D\u2019Mello","raw_affiliation_strings":["Department of Microbiology and Immunology, Institute for Genome Sciences, University of Maryland School of Medicine , Baltimore, MD 21201 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, Institute for Genome Sciences, University of Maryland School of Medicine , Baltimore, MD 21201 , USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084925508","display_name":"Herv\u00e9 Tettelin","orcid":"https://orcid.org/0000-0002-0615-3257"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herv\u00e9 Tettelin","raw_affiliation_strings":["Department of Microbiology and Immunology, Institute for Genome Sciences, University of Maryland School of Medicine , Baltimore, MD 21201 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, Institute for Genome Sciences, University of Maryland School of Medicine , Baltimore, MD 21201 , USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA","Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA","Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School , Ann Arbor, Michigan 48109 , USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5024742201"],"corresponding_institution_ids":["https://openalex.org/I27837315"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.9102,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.86259628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reverse-vaccinology","display_name":"Reverse vaccinology","score":0.7941861152648926},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5987276434898376},{"id":"https://openalex.org/keywords/licensure","display_name":"Licensure","score":0.5664446353912354},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5210082530975342},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4623500108718872},{"id":"https://openalex.org/keywords/vaccine-safety","display_name":"Vaccine safety","score":0.42039069533348083},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.41463959217071533},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3495902419090271},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.33471769094467163},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3296932578086853},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.27373987436294556},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.19610550999641418},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.16034486889839172},{"id":"https://openalex.org/keywords/immunization","display_name":"Immunization","score":0.15797823667526245},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15158599615097046}],"concepts":[{"id":"https://openalex.org/C2781152039","wikidata":"https://www.wikidata.org/wiki/Q7318278","display_name":"Reverse vaccinology","level":4,"score":0.7941861152648926},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5987276434898376},{"id":"https://openalex.org/C2781234862","wikidata":"https://www.wikidata.org/wiki/Q6543077","display_name":"Licensure","level":2,"score":0.5664446353912354},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5210082530975342},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4623500108718872},{"id":"https://openalex.org/C3019706980","wikidata":"https://www.wikidata.org/wiki/Q445335","display_name":"Vaccine safety","level":4,"score":0.42039069533348083},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.41463959217071533},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3495902419090271},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.33471769094467163},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3296932578086853},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.27373987436294556},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.19610550999641418},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.16034486889839172},{"id":"https://openalex.org/C2780801004","wikidata":"https://www.wikidata.org/wiki/Q1415366","display_name":"Immunization","level":3,"score":0.15797823667526245},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15158599615097046},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000078782","descriptor_name":"Vaccinology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac190","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac190","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35649389","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35649389","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9294427","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9294427","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9294427","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9294427","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},"sustainable_development_goals":[{"score":0.6399999856948853,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1653676391","display_name":null,"funder_award_id":"1R01AI081062","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4293237771","display_name":null,"funder_award_id":"1UH2AI132931","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":204,"referenced_works":["https://openalex.org/W617135685","https://openalex.org/W1918902125","https://openalex.org/W1933315991","https://openalex.org/W1969119770","https://openalex.org/W1970272805","https://openalex.org/W1983077458","https://openalex.org/W1993772622","https://openalex.org/W1996086117","https://openalex.org/W1996148443","https://openalex.org/W1996326524","https://openalex.org/W1996746577","https://openalex.org/W2001219627","https://openalex.org/W2005095482","https://openalex.org/W2008241299","https://openalex.org/W2014274241","https://openalex.org/W2020519557","https://openalex.org/W2026897086","https://openalex.org/W2029881460","https://openalex.org/W2035240910","https://openalex.org/W2035471593","https://openalex.org/W2036965053","https://openalex.org/W2049108850","https://openalex.org/W2067761505","https://openalex.org/W2068841432","https://openalex.org/W2071474523","https://openalex.org/W2072901132","https://openalex.org/W2073217938","https://openalex.org/W2085752173","https://openalex.org/W2097874743","https://openalex.org/W2098044734","https://openalex.org/W2098987784","https://openalex.org/W2099625540","https://openalex.org/W2102023232","https://openalex.org/W2102367710","https://openalex.org/W2105643562","https://openalex.org/W2108621502","https://openalex.org/W2118058902","https://openalex.org/W2118258530","https://openalex.org/W2120535580","https://openalex.org/W2124672930","https://openalex.org/W2126114330","https://openalex.org/W2128480987","https://openalex.org/W2130887658","https://openalex.org/W2131474431","https://openalex.org/W2138903443","https://openalex.org/W2141201603","https://openalex.org/W2142529984","https://openalex.org/W2142635855","https://openalex.org/W2144902263","https://openalex.org/W2145591296","https://openalex.org/W2146089916","https://openalex.org/W2148546618","https://openalex.org/W2150550043","https://openalex.org/W2156039063","https://openalex.org/W2160603580","https://openalex.org/W2161984798","https://openalex.org/W2163782220","https://openalex.org/W2163827272","https://openalex.org/W2166808662","https://openalex.org/W2168036974","https://openalex.org/W2168688111","https://openalex.org/W2171178051","https://openalex.org/W2171740232","https://openalex.org/W2179516279","https://openalex.org/W2298881040","https://openalex.org/W2303751549","https://openalex.org/W2338265029","https://openalex.org/W2342838938","https://openalex.org/W2344689512","https://openalex.org/W2399270745","https://openalex.org/W2413168313","https://openalex.org/W2474454223","https://openalex.org/W2508622936","https://openalex.org/W2509598555","https://openalex.org/W2520193009","https://openalex.org/W2529370868","https://openalex.org/W2538276274","https://openalex.org/W2554660667","https://openalex.org/W2565909019","https://openalex.org/W2581097550","https://openalex.org/W2585805431","https://openalex.org/W2588466226","https://openalex.org/W2590924903","https://openalex.org/W2596259003","https://openalex.org/W2597000813","https://openalex.org/W2605987436","https://openalex.org/W2607286972","https://openalex.org/W2608948397","https://openalex.org/W2611314002","https://openalex.org/W2619954869","https://openalex.org/W2750464792","https://openalex.org/W2766123177","https://openalex.org/W2768064447","https://openalex.org/W2770091772","https://openalex.org/W2772514355","https://openalex.org/W2783102765","https://openalex.org/W2786844002","https://openalex.org/W2800813971","https://openalex.org/W2805588642","https://openalex.org/W2807765202","https://openalex.org/W2808156229","https://openalex.org/W2809178438","https://openalex.org/W2898120697","https://openalex.org/W2898321887","https://openalex.org/W2898389621","https://openalex.org/W2913893387","https://openalex.org/W2914586483","https://openalex.org/W2937554331","https://openalex.org/W2947120422","https://openalex.org/W2948127891","https://openalex.org/W2974429973","https://openalex.org/W2987982852","https://openalex.org/W2995450470","https://openalex.org/W2995850610","https://openalex.org/W2996057451","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3003644051","https://openalex.org/W3006708056","https://openalex.org/W3007643904","https://openalex.org/W3008443627","https://openalex.org/W3009335299","https://openalex.org/W3011488280","https://openalex.org/W3014710260","https://openalex.org/W3014989892","https://openalex.org/W3017133925","https://openalex.org/W3017630886","https://openalex.org/W3020445608","https://openalex.org/W3022046133","https://openalex.org/W3022148440","https://openalex.org/W3023573065","https://openalex.org/W3024340871","https://openalex.org/W3029922795","https://openalex.org/W3035434194","https://openalex.org/W3036607916","https://openalex.org/W3037923073","https://openalex.org/W3040508291","https://openalex.org/W3045149055","https://openalex.org/W3045578670","https://openalex.org/W3045734160","https://openalex.org/W3088489318","https://openalex.org/W3091443388","https://openalex.org/W3092171256","https://openalex.org/W3093367571","https://openalex.org/W3093630403","https://openalex.org/W3106602626","https://openalex.org/W3108350763","https://openalex.org/W3112820477","https://openalex.org/W3112993347","https://openalex.org/W3115778640","https://openalex.org/W3119453605","https://openalex.org/W3121000782","https://openalex.org/W3131645963","https://openalex.org/W3135837533","https://openalex.org/W3136597676","https://openalex.org/W3138152986","https://openalex.org/W3154080401","https://openalex.org/W3157601550","https://openalex.org/W3161376265","https://openalex.org/W3162421907","https://openalex.org/W3163785571","https://openalex.org/W3164907334","https://openalex.org/W3165479483","https://openalex.org/W3173512675","https://openalex.org/W3179259355","https://openalex.org/W3180285023","https://openalex.org/W3181498676","https://openalex.org/W3184744748","https://openalex.org/W3193682077","https://openalex.org/W3198038542","https://openalex.org/W3201270194","https://openalex.org/W3201474993","https://openalex.org/W3202706651","https://openalex.org/W3203430312","https://openalex.org/W3204794075","https://openalex.org/W3208696114","https://openalex.org/W3208841684","https://openalex.org/W3210921815","https://openalex.org/W3211780071","https://openalex.org/W3216623344","https://openalex.org/W4200102832","https://openalex.org/W4200173474","https://openalex.org/W4200198501","https://openalex.org/W4200425166","https://openalex.org/W4206085939","https://openalex.org/W4210252764","https://openalex.org/W4210613328","https://openalex.org/W4210667549","https://openalex.org/W4220770600","https://openalex.org/W4225492776","https://openalex.org/W4235859326","https://openalex.org/W4239399537","https://openalex.org/W6667814245","https://openalex.org/W6748223485","https://openalex.org/W6772698027","https://openalex.org/W6774922165","https://openalex.org/W6776593824","https://openalex.org/W6786424682","https://openalex.org/W6787051760","https://openalex.org/W6791393769","https://openalex.org/W6797853665","https://openalex.org/W6802288061","https://openalex.org/W6803520205","https://openalex.org/W6805370160"],"related_works":["https://openalex.org/W1262800261","https://openalex.org/W2046452372","https://openalex.org/W3029677074","https://openalex.org/W1554389191","https://openalex.org/W2315201960","https://openalex.org/W2564391297","https://openalex.org/W2914709883","https://openalex.org/W2078203382","https://openalex.org/W3121372691","https://openalex.org/W3171143626"],"abstract_inverted_index":{"Rational":[0],"vaccine":[1,4,15,29,51,64,74,95,131,137,149,178,184],"design,":[2],"especially":[3],"antigen":[5,100],"identification":[6,36],"and":[7,13,37,57,61,66,70,115,151,161,165,170,177],"optimization,":[8],"is":[9,77],"critical":[10],"to":[11,129],"successful":[12],"efficient":[14],"development":[16],"against":[17],"various":[18,122],"infectious":[19],"diseases":[20],"including":[21],"coronavirus":[22],"disease":[23],"2019":[24],"(COVID-19).":[25],"In":[26],"general,":[27],"computational":[28],"design":[30,52,185],"includes":[31],"three":[32],"major":[33],"stages:":[34],"(i)":[35],"annotation":[38],"of":[39,80,121,135,148],"experimentally":[40,81],"verified":[41,82],"gold":[42,90],"standard":[43,91],"protective":[44,83,99],"antigens":[45,109],"through":[46,110],"literature":[47],"mining,":[48],"(ii)":[49],"rational":[50,94,183],"using":[53],"reverse":[54],"vaccinology":[55,59],"(RV)":[56],"structural":[58,111],"(SV)":[60],"(iii)":[62],"post-licensure":[63,136],"success":[65],"adverse":[67,138],"event":[68,139],"surveillance":[69],"its":[71],"usage":[72],"for":[73,93],"design.":[75,96,132,179],"Protegen":[76],"a":[78,168],"database":[79],"antigens,":[84],"which":[85],"can":[86],"be":[87,155],"used":[88,156],"as":[89],"data":[92,141,164],"RV":[97,114],"predicts":[98],"targets":[101],"primarily":[102],"from":[103],"genome":[104],"sequence":[105],"analysis.":[106],"SV":[107,116],"refines":[108],"engineering.":[112],"Recently,":[113],"approaches,":[117],"with":[118],"the":[119],"support":[120],"machine":[123,175],"learning":[124,176],"methods,":[125],"have":[126],"been":[127],"applied":[128],"COVID-19":[130],"The":[133],"analysis":[134],"report":[140],"also":[142],"provides":[143],"valuable":[144],"results":[145],"in":[146,167],"terms":[147],"safety":[150],"how":[152],"vaccines":[153],"should":[154],"or":[157],"paused.":[158],"Ontology":[159],"standardizes":[160],"incorporates":[162],"heterogeneous":[163],"knowledge":[166],"human-":[169],"computer-interpretable":[171],"manner,":[172],"further":[173],"supporting":[174],"Future":[180],"directions":[181],"on":[182],"are":[186],"discussed.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
