{"id":"https://openalex.org/W4225758372","doi":"https://doi.org/10.1093/bib/bbac173","title":"HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction","display_name":"HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction","publication_year":2022,"publication_date":"2022-04-19","ids":{"openalex":"https://openalex.org/W4225758372","doi":"https://doi.org/10.1093/bib/bbac173","pmid":"https://pubmed.ncbi.nlm.nih.gov/35514183"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac173","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac173/45936212/bbac173.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac173/45936212/bbac173.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100378912","display_name":"Yaqi Zhang","orcid":"https://orcid.org/0000-0002-1992-3863"},"institutions":[{"id":"https://openalex.org/I149137203","display_name":"Guiyang Medical University","ror":"https://ror.org/035y7a716","country_code":"CN","type":"education","lineage":["https://openalex.org/I149137203"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaqi Zhang","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","School of Biology & Engineering, Guizhou Medical University , Guiyang, Guizhou 550004, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"School of Biology & Engineering, Guizhou Medical University , Guiyang, Guizhou 550004, P.R. China","institution_ids":["https://openalex.org/I149137203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011946290","display_name":"Gancheng Zhu","orcid":"https://orcid.org/0000-0002-4329-4219"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gancheng Zhu","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102006839","display_name":"Kewei Li","orcid":"https://orcid.org/0000-0002-2797-576X"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kewei Li","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100325794","display_name":"Fei Li","orcid":"https://orcid.org/0000-0002-1338-2533"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Li","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463922","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0003-3233-3777"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lan Huang","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034008160","display_name":"Meiyu Duan","orcid":"https://orcid.org/0000-0001-7171-2695"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Meiyu Duan","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China"],"raw_orcid":"https://orcid.org/0000-0001-7171-2695","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058786170","display_name":"Fengfeng Zhou","orcid":"https://orcid.org/0000-0002-8108-6007"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fengfeng Zhou","raw_affiliation_strings":["College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China"],"raw_orcid":"https://orcid.org/0000-0002-8108-6007","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University , Changchun, Jilin 130012, P.R. China","institution_ids":["https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5034008160","https://openalex.org/A5058786170"],"corresponding_institution_ids":["https://openalex.org/I194450716"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.3311,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.95727544,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.640040397644043},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.6238870024681091},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.593791663646698},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5343669056892395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45167675614356995},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3742668032646179},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34957048296928406},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.26424282789230347},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24941956996917725},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19083473086357117}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.640040397644043},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.6238870024681091},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.593791663646698},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5343669056892395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45167675614356995},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3742668032646179},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34957048296928406},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.26424282789230347},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24941956996917725},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19083473086357117}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015234","descriptor_name":"HLA-A Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015234","descriptor_name":"HLA-A Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015234","descriptor_name":"HLA-A Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac173","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac173/45936212/bbac173.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35514183","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35514183","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9487590","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9487590","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac173","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac173","pdf_url":"https://academic.oup.com/bib/article-pdf/23/5/bbac173/45936212/bbac173.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2241915452","display_name":null,"funder_award_id":"62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6004824620","display_name":null,"funder_award_id":"20180622002JC","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7658122682","display_name":null,"funder_award_id":"U19A2061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8264234655","display_name":null,"funder_award_id":"62072212 and U19A2061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4225758372.pdf","grobid_xml":"https://content.openalex.org/works/W4225758372.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W2000305183","https://openalex.org/W2066257701","https://openalex.org/W2071128523","https://openalex.org/W2099591743","https://openalex.org/W2102237050","https://openalex.org/W2102461176","https://openalex.org/W2111574971","https://openalex.org/W2136029016","https://openalex.org/W2158266834","https://openalex.org/W2166570238","https://openalex.org/W2187089797","https://openalex.org/W2275625487","https://openalex.org/W2471645096","https://openalex.org/W2748343486","https://openalex.org/W2767073209","https://openalex.org/W2786672974","https://openalex.org/W2793168264","https://openalex.org/W2799321649","https://openalex.org/W2889326414","https://openalex.org/W2896457183","https://openalex.org/W2900992438","https://openalex.org/W2901872500","https://openalex.org/W2947980028","https://openalex.org/W2949711156","https://openalex.org/W2950373774","https://openalex.org/W2951433247","https://openalex.org/W2952654982","https://openalex.org/W2953008890","https://openalex.org/W2967717440","https://openalex.org/W2972955359","https://openalex.org/W2979665139","https://openalex.org/W2983176158","https://openalex.org/W2996428491","https://openalex.org/W3024570138","https://openalex.org/W3034527519","https://openalex.org/W3036553057","https://openalex.org/W3042452836","https://openalex.org/W3095595608","https://openalex.org/W3122375914","https://openalex.org/W3136918052","https://openalex.org/W3163892338","https://openalex.org/W3183218270","https://openalex.org/W3190382703","https://openalex.org/W3199999760","https://openalex.org/W3202999064","https://openalex.org/W3205595869","https://openalex.org/W3207838037","https://openalex.org/W3208713201","https://openalex.org/W3211333882","https://openalex.org/W3212257675","https://openalex.org/W3212983993","https://openalex.org/W4205742853","https://openalex.org/W4287724045","https://openalex.org/W6694627246","https://openalex.org/W6748816842","https://openalex.org/W6753075380","https://openalex.org/W6755207826","https://openalex.org/W6756136474","https://openalex.org/W6757785609","https://openalex.org/W6763868836","https://openalex.org/W6764565883","https://openalex.org/W6766529888","https://openalex.org/W6768021236","https://openalex.org/W6780145172","https://openalex.org/W6802370078","https://openalex.org/W6802927787","https://openalex.org/W6803676261","https://openalex.org/W6803835618","https://openalex.org/W6803939570","https://openalex.org/W6806121340"],"related_works":["https://openalex.org/W1526195401","https://openalex.org/W4313385292","https://openalex.org/W1759461029","https://openalex.org/W2126989399","https://openalex.org/W2372019020","https://openalex.org/W2086851734","https://openalex.org/W2375446917","https://openalex.org/W3134906029","https://openalex.org/W2069603249","https://openalex.org/W2087171568"],"abstract_inverted_index":{"Human":[0],"Leukocyte":[1],"Antigen":[2],"(HLA)":[3],"is":[4],"a":[5,186],"type":[6],"of":[7,13,44,59,67,110,175,185,189],"molecule":[8],"residing":[9],"on":[10,41,153,171],"the":[11,23,28,38,42,64,74,94,101,111,129,134,143,149,155,159,166,172,176,182,195,203],"surfaces":[12,43],"most":[14],"human":[15],"cells":[16,46,51],"and":[17,47,164,202],"exerts":[18],"an":[19],"essential":[20],"role":[21],"in":[22,132,162],"immune":[24],"system":[25],"responding":[26],"to":[27,158],"invasive":[29],"items.":[30],"The":[31,56,89,117,137,199],"T":[32,54],"cell":[33],"antigen":[34],"receptors":[35],"may":[36,80],"recognize":[37],"HLA-peptide":[39],"complexes":[40],"cancer":[45,50,68],"destroy":[48],"these":[49],"through":[52],"toxic":[53],"lymphocytes.":[55],"computational":[57],"determination":[58],"HLA-binding":[60],"peptides":[61,156],"will":[62],"facilitate":[63],"rapid":[65],"development":[66],"immunotherapies.":[69],"This":[70],"study":[71],"hypothesized":[72],"that":[73,121,142],"natural":[75],"language":[76],"processing-encoded":[77],"peptide":[78],"features":[79,99,109],"be":[81],"further":[82],"enriched":[83],"by":[84],"another":[85],"deep":[86],"neural":[87],"network.":[88],"hypothesis":[90],"was":[91],"tested":[92],"with":[93],"Bi-directional":[95],"Long":[96],"Short-Term":[97],"Memory-extracted":[98],"from":[100,107],"pretrained":[102],"Protein":[103],"Bidirectional":[104],"Encoder":[105],"Representations":[106],"Transformers-encoded":[108],"class":[112],"I":[113],"HLA":[114],"(HLA-I)-binding":[115],"peptides.":[116,136],"experimental":[118],"data":[119,140],"showed":[120],"our":[122],"proposed":[123,144],"HLAB":[124,145],"feature":[125,205],"engineering":[126],"algorithm":[127,146],"outperformed":[128],"existing":[130,151],"ones":[131],"detecting":[133],"HLA-I-binding":[135],"extensive":[138],"evaluation":[139],"show":[141],"outperforms":[147],"all":[148],"seven":[150,177],"studies":[152],"predicting":[154],"binding":[157],"HLA-A*01:01":[160],"allele":[161],"AUC":[163,169],"achieves":[165],"best":[167],"average":[168],"values":[170],"six":[173],"out":[174],"k-mers":[178],"(k=8,9,...,14,":[179],"respectively":[180],"represent":[181],"prediction":[183,197],"task":[184],"polypeptide":[187],"consisting":[188],"k":[190],"amino":[191],"acids)":[192],"except":[193],"for":[194],"9-mer":[196],"tasks.":[198],"source":[200],"code":[201],"fine-tuned":[204],"extraction":[206],"models":[207],"are":[208],"available":[209],"at":[210],"http://www.healthinformaticslab.org/supp/resources.php.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":3}],"updated_date":"2026-05-23T08:51:43.019350","created_date":"2025-10-10T00:00:00"}
