{"id":"https://openalex.org/W4226249600","doi":"https://doi.org/10.1093/bib/bbac149","title":"Detecting sparse microbial association signals adaptively from longitudinal microbiome data based on generalized estimating equations","display_name":"Detecting sparse microbial association signals adaptively from longitudinal microbiome data based on generalized estimating equations","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4226249600","doi":"https://doi.org/10.1093/bib/bbac149","pmid":"https://pubmed.ncbi.nlm.nih.gov/35561307"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac149","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac149","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045344688","display_name":"Han Sun","orcid":"https://orcid.org/0000-0003-0986-959X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I4210100789","display_name":"Wuhan College","ror":"https://ror.org/01dashf18","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210100789"]},{"id":"https://openalex.org/I4210136741","display_name":"Wuhan Applied Science and Technology School","ror":"https://ror.org/03pentr35","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136741"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Sun","raw_affiliation_strings":["Central China Normal University , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","School of Mathematics and Statistics , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University , , Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"School of Mathematics and Statistics , , Wuhan 430079, China","institution_ids":["https://openalex.org/I37461747","https://openalex.org/I4210100789","https://openalex.org/I4210136741"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035764157","display_name":"Xiaoyun Huang","orcid":"https://orcid.org/0000-0002-3389-9759"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyun Huang","raw_affiliation_strings":["Central China Normal University , , Wuhan 430079, China","Collaborative & Innovative Center for Educational Technology , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","Collaborative & Innovative Center for Educational Technology, Central China Normal University, Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University , , Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Collaborative & Innovative Center for Educational Technology , , Wuhan 430079, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"Collaborative & Innovative Center for Educational Technology, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025964294","display_name":"Ban Huo","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ban Huo","raw_affiliation_strings":["Central China Normal University , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","School of Computer , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","School of Computer, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University , , Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"School of Computer , , Wuhan 430079, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042786517","display_name":"Yuting Tan","orcid":"https://orcid.org/0000-0002-3605-1307"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]},{"id":"https://openalex.org/I4210100789","display_name":"Wuhan College","ror":"https://ror.org/01dashf18","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210100789"]},{"id":"https://openalex.org/I4210136741","display_name":"Wuhan Applied Science and Technology School","ror":"https://ror.org/03pentr35","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136741"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuting Tan","raw_affiliation_strings":["Central China Normal University , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","School of Mathematics and Statistics , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University , , Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"School of Mathematics and Statistics , , Wuhan 430079, China","institution_ids":["https://openalex.org/I37461747","https://openalex.org/I4210100789","https://openalex.org/I4210136741"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102010131","display_name":"Tingting He","orcid":"https://orcid.org/0000-0001-7523-6550"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["Central China Normal University , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","National Language Resources Monitoring & Research Center for Network Media , , Wuhan 430079, China","School of Computer , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan 430079, China","School of Computer, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University , , Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media , , Wuhan 430079, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer , , Wuhan 430079, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["Central China Normal University , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","National Language Resources Monitoring & Research Center for Network Media , , Wuhan 430079, China","School of Computer , , Wuhan 430079, China","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan 430079, China","School of Computer, Central China Normal University, Wuhan 430079, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University , , Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning , , Wuhan 430079, China","institution_ids":["https://openalex.org/I4210100255"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media , , Wuhan 430079, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer , , Wuhan 430079, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan 430079, China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003550654"],"corresponding_institution_ids":["https://openalex.org/I40963666","https://openalex.org/I4210100255"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":null,"fwci":0.8648,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.69814316,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.8953182697296143},{"id":"https://openalex.org/keywords/generalized-estimating-equation","display_name":"Generalized estimating equation","score":0.6353331208229065},{"id":"https://openalex.org/keywords/longitudinal-study","display_name":"Longitudinal study","score":0.5183876156806946},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5183459520339966},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4304952323436737},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4137725234031677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.386461079120636},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27558204531669617},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.27457451820373535},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1684146523475647},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16106945276260376},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10859981179237366}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.8953182697296143},{"id":"https://openalex.org/C27403532","wikidata":"https://www.wikidata.org/wiki/Q5532474","display_name":"Generalized estimating equation","level":2,"score":0.6353331208229065},{"id":"https://openalex.org/C2777895361","wikidata":"https://www.wikidata.org/wiki/Q1758614","display_name":"Longitudinal study","level":2,"score":0.5183876156806946},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5183459520339966},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4304952323436737},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4137725234031677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.386461079120636},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27558204531669617},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.27457451820373535},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1684146523475647},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16106945276260376},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10859981179237366},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D003424","descriptor_name":"Crohn Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac149","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac149","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35561307","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35561307","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1307575636","display_name":"\u9762\u5411\u8111\u75be\u75c5\u7684\u4eba\u4f53\u80a0\u9053\u5fae\u751f\u7269\u7ec4\u5b66\u6570\u636e\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1820593694","display_name":"\u57fa\u4e8e\u591a\u7ec4\u5b66\u6570\u636e\u7684\u5fae\u751f\u7269\u9ad8\u9636\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61872157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W1516274582","https://openalex.org/W1518286619","https://openalex.org/W1547943993","https://openalex.org/W1970035161","https://openalex.org/W1977804070","https://openalex.org/W1981106668","https://openalex.org/W1985258161","https://openalex.org/W1989012476","https://openalex.org/W1993046026","https://openalex.org/W2000864749","https://openalex.org/W2033508629","https://openalex.org/W2037878492","https://openalex.org/W2049704395","https://openalex.org/W2049929873","https://openalex.org/W2051322058","https://openalex.org/W2054358221","https://openalex.org/W2069764417","https://openalex.org/W2085056743","https://openalex.org/W2099107563","https://openalex.org/W2114115532","https://openalex.org/W2124053577","https://openalex.org/W2127036970","https://openalex.org/W2128769815","https://openalex.org/W2130674027","https://openalex.org/W2138423928","https://openalex.org/W2149860264","https://openalex.org/W2150320991","https://openalex.org/W2151409320","https://openalex.org/W2169364567","https://openalex.org/W2311203695","https://openalex.org/W2340748026","https://openalex.org/W2342621145","https://openalex.org/W2395461901","https://openalex.org/W2398800349","https://openalex.org/W2561012278","https://openalex.org/W2609405928","https://openalex.org/W2612772400","https://openalex.org/W2751993817","https://openalex.org/W2765875974","https://openalex.org/W2766733776","https://openalex.org/W2785692071","https://openalex.org/W2786532083","https://openalex.org/W2803137361","https://openalex.org/W2883762818","https://openalex.org/W2890491535","https://openalex.org/W2892058508","https://openalex.org/W2896481903","https://openalex.org/W2896965086","https://openalex.org/W2904156485","https://openalex.org/W2911964244","https://openalex.org/W2916333851","https://openalex.org/W2920009718","https://openalex.org/W2946594675","https://openalex.org/W2951254987","https://openalex.org/W2951393041","https://openalex.org/W2955323986","https://openalex.org/W2961079136","https://openalex.org/W2978077164","https://openalex.org/W2987356303","https://openalex.org/W2991423641","https://openalex.org/W3017169614","https://openalex.org/W3024376490","https://openalex.org/W3026052153","https://openalex.org/W3048918321","https://openalex.org/W3081544587","https://openalex.org/W3084413028","https://openalex.org/W3099354396","https://openalex.org/W3102741737","https://openalex.org/W3106056496","https://openalex.org/W3128912982","https://openalex.org/W3174029804","https://openalex.org/W3194464505","https://openalex.org/W3199286150","https://openalex.org/W4239510810","https://openalex.org/W4251962509"],"related_works":["https://openalex.org/W2604155846","https://openalex.org/W3121185202","https://openalex.org/W3035180550","https://openalex.org/W2790850565","https://openalex.org/W4388834263","https://openalex.org/W1983943311","https://openalex.org/W3020516445","https://openalex.org/W3167013908","https://openalex.org/W2133851062","https://openalex.org/W4210737759"],"abstract_inverted_index":{"The":[0],"association":[1,18,55,89,201],"between":[2,202],"the":[3,104,110,151,182,203,214,219],"compositions":[4],"of":[5,177,184],"microbial":[6,88],"communities":[7],"and":[8,27,156,196,206],"various":[9,175],"host":[10,178,220],"phenotypes":[11,179],"is":[12,72,188],"an":[13],"important":[14],"research":[15,19],"topic.":[16],"Microbiome":[17],"addresses":[20],"multiple":[21,128],"domains,":[22],"such":[23],"as":[24],"human":[25],"disease":[26],"diet.":[28],"Statistical":[29],"methods":[30,50],"for":[31,123,191],"testing":[32],"microbiome-phenotype":[33],"associations":[34],"have":[35],"been":[36],"studied":[37],"recently":[38],"to":[39,43,52,85,119,161,170,180,222],"determine":[40],"their":[41],"ability":[42],"assess":[44],"longitudinal":[45,58,92,114,124,171,193],"microbiome":[46,59,76,93,129,172,194,205],"data.":[47,60,94,115],"However,":[48],"existing":[49],"fail":[51],"detect":[53,86],"sparse":[54,87],"signals":[56,90],"in":[57,113],"In":[61,209],"this":[62],"paper,":[63],"we":[64,197],"developed":[65],"a":[66,73,162,199],"novel":[67],"method,":[68],"namely":[69],"aGEEMIHC,":[70],"which":[71],"data-driven":[74],"adaptive":[75],"higher":[77,130],"criticism":[78,131],"analysis":[79],"based":[80,133],"on":[81,134],"generalized":[82,97,135],"estimating":[83,98,136],"equations":[84,99,137],"from":[91,109],"aGEEMiHC":[95,126,148,187],"adopts":[96],"framework":[100],"that":[101,147],"fully":[102],"considers":[103],"correlation":[105,121,141],"among":[106],"different":[107,139],"observations":[108],"same":[111],"subject":[112],"To":[116],"be":[117],"robust":[118],"diverse":[120],"structures":[122],"data,":[125,195],"integrates":[127],"analyses":[132],"with":[138,174,218],"working":[140],"structures.":[142],"Extensive":[143],"simulation":[144],"experiments":[145],"demonstrate":[146,181],"can":[149],"control":[150],"type":[152],"I":[153],"error":[154],"correctly":[155],"achieve":[157],"superior":[158],"performance":[159],"according":[160],"statistical":[163],"power":[164],"comparison.":[165],"We":[166],"also":[167,189],"applied":[168],"it":[169],"data":[173],"types":[176],"stability":[183],"our":[185,211],"method.":[186],"utilized":[190],"real":[192],"found":[198],"significant":[200,215],"gut":[204],"Crohn's":[207],"disease.":[208],"addition,":[210],"method":[212],"ranks":[213],"factors":[216],"associated":[217],"phenotype":[221],"provide":[223],"potential":[224],"biomarkers.":[225]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
