{"id":"https://openalex.org/W4224224147","doi":"https://doi.org/10.1093/bib/bbac136","title":"A quality control portal for sequencing data deposited at the European genome\u2013phenome archive","display_name":"A quality control portal for sequencing data deposited at the European genome\u2013phenome archive","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4224224147","doi":"https://doi.org/10.1093/bib/bbac136","pmid":"https://pubmed.ncbi.nlm.nih.gov/35438138"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac136","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac136/43745276/bbac136.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac136/43745276/bbac136.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100370712","display_name":"Dietmar Fern\u00e1ndez\u2010Orth","orcid":"https://orcid.org/0000-0002-1237-3192"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Dietmar Fern\u00e1ndez-Orth","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023487324","display_name":"Manuel Rueda","orcid":"https://orcid.org/0000-0001-9280-058X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Rueda","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017981552","display_name":"Babita Singh","orcid":"https://orcid.org/0000-0002-7989-9084"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Babita Singh","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021347900","display_name":"Mauricio Moldes","orcid":"https://orcid.org/0000-0001-5455-7769"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mauricio Moldes","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057601434","display_name":"Aina Jen\u00e9","orcid":"https://orcid.org/0000-0001-7721-7097"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Aina Jene","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044785928","display_name":"M. Ferri","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta Ferri","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011746355","display_name":"Claudia Vasallo","orcid":"https://orcid.org/0000-0002-0043-0882"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Claudia Vasallo","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060159526","display_name":"Lauren A. Fromont","orcid":"https://orcid.org/0000-0002-2900-3868"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Lauren A Fromont","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058492717","display_name":"Arcadi Navarro","orcid":"https://orcid.org/0000-0003-2162-8246"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Arcadi Navarro","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040272750","display_name":"Jordi Rambla","orcid":"https://orcid.org/0000-0001-9091-257X"},"institutions":[{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"funder","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jordi Rambla","raw_affiliation_strings":["European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain"],"affiliations":[{"raw_affiliation_string":"European Genome-phenome Archive (EGA) in the Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology Dr. Aiguader 88, Barcelona, 08003 Spain","institution_ids":["https://openalex.org/I4210137962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5100370712"],"corresponding_institution_ids":["https://openalex.org/I4210137962"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.3466,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54369631,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6854259371757507},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6505680680274963},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6142541170120239},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5535154342651367},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.4966147541999817},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.48361244797706604},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38544899225234985},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3665904104709625},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3539503216743469},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3523182272911072}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6854259371757507},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6505680680274963},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6142541170120239},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5535154342651367},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.4966147541999817},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.48361244797706604},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38544899225234985},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3665904104709625},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3539503216743469},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3523182272911072},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbac136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac136","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac136/43745276/bbac136.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35438138","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35438138","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/53230","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/53230","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:9116225","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9116225","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac136","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac136/43745276/bbac136.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G5658388395","display_name":null,"funder_award_id":"CERCA","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G5858381528","display_name":null,"funder_award_id":"871075","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6134979568","display_name":null,"funder_award_id":"CERCA Programme/","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G7331901853","display_name":null,"funder_award_id":"EU H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320310050","display_name":"University of Utah","ror":"https://ror.org/03r0ha626"},{"id":"https://openalex.org/F4320315803","display_name":"Centres de Recerca de Catalunya","ror":null},{"id":"https://openalex.org/F4320317174","display_name":"Centre de Regulaci\u00f3 Gen\u00f2mica","ror":"https://ror.org/03wyzt892"},{"id":"https://openalex.org/F4320318602","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29"},{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322121","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4224224147.pdf","grobid_xml":"https://content.openalex.org/works/W4224224147.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1567333450","https://openalex.org/W1970639360","https://openalex.org/W2037086031","https://openalex.org/W2108234281","https://openalex.org/W2121180999","https://openalex.org/W2149992227","https://openalex.org/W2159084616","https://openalex.org/W2432815617","https://openalex.org/W2516349093","https://openalex.org/W2904450217","https://openalex.org/W2959264135","https://openalex.org/W2968778554","https://openalex.org/W2973214147","https://openalex.org/W2995210657","https://openalex.org/W3131055609","https://openalex.org/W3134285609","https://openalex.org/W3213275415","https://openalex.org/W6803448319"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2095118173","https://openalex.org/W2382021449","https://openalex.org/W2104269053","https://openalex.org/W2106424170","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2768810474","https://openalex.org/W4206575749"],"abstract_inverted_index":{"Since":[0],"its":[1],"launch":[2],"in":[3],"2008,":[4],"the":[5,13,27,31,35,110,138,144,151],"European":[6],"Genome-Phenome":[7],"Archive":[8],"(EGA)":[9],"has":[10],"been":[11],"leading":[12],"archiving":[14],"and":[15,56,76,91,124,128,148],"distribution":[16],"of":[17,26,34,39,119,126,140,153],"human":[18],"identifiable":[19],"genomic":[20],"data.":[21],"In":[22],"this":[23],"regard,":[24],"one":[25],"community":[28],"concerns":[29],"is":[30],"potential":[32],"usability":[33],"stored":[36],"data,":[37],"as":[38,117],"now,":[40],"data":[41,55,141,145,154],"submitters":[42],"are":[43],"not":[44],"mandated":[45],"to":[46,105,136,143],"perform":[47],"any":[48],"quality":[49,118,139],"control":[50],"(QC)":[51],"before":[52],"uploading":[53],"their":[54],"associated":[57],"metadata":[58],"information.":[59],"Here,":[60],"we":[61],"present":[62],"a":[63,113],"new":[64],"File":[65],"QC":[66,73,99],"Portal":[67],"developed":[68],"at":[69,97],"EGA,":[70],"along":[71],"with":[72],"reports":[74,100],"performed":[75],"created":[77],"for":[78],"1":[79],"694":[80],"442":[81],"files":[82,111],"[Fastq,":[83],"sequence":[84],"alignment":[85,88,121],"map":[86,89],"(SAM)/binary":[87],"(BAM)/CRAM":[90],"variant":[92],"call":[93],"format":[94],"(VCF)]":[95],"submitted":[96],"EGA.":[98],"allow":[101],"anonymous":[102],"EGA":[103],"users":[104],"view":[106],"summary-level":[107],"information":[108],"regarding":[109],"within":[112],"specific":[114],"dataset,":[115],"such":[116],"reads,":[120],"quality,":[122],"number":[123],"type":[125],"variants":[127],"other":[129],"features.":[130],"Researchers":[131],"benefit":[132],"from":[133],"being":[134],"able":[135],"assess":[137],"prior":[142],"access":[146],"decision":[147],"thereby,":[149],"increasing":[150],"reusability":[152],"(https://ega-archive.org/blog/data-upcycling-powered-by-ega/).":[155]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
