{"id":"https://openalex.org/W4224316211","doi":"https://doi.org/10.1093/bib/bbac133","title":"Transfer learning of clinical outcomes from preclinical molecular data, principles and perspectives","display_name":"Transfer learning of clinical outcomes from preclinical molecular data, principles and perspectives","publication_year":2022,"publication_date":"2022-03-28","ids":{"openalex":"https://openalex.org/W4224316211","doi":"https://doi.org/10.1093/bib/bbac133","pmid":"https://pubmed.ncbi.nlm.nih.gov/35453145"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac133","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac133/43745667/bbac133.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac133/43745667/bbac133.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042756729","display_name":"Axel Kowald","orcid":"https://orcid.org/0000-0001-6448-4364"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Axel Kowald","raw_affiliation_strings":["Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086622373","display_name":"Israel Barrantes","orcid":"https://orcid.org/0000-0002-5252-4485"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Israel Barrantes","raw_affiliation_strings":["Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089261582","display_name":"Steffen M\u00f6ller","orcid":"https://orcid.org/0000-0002-7187-4683"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen M\u00f6ller","raw_affiliation_strings":["Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025272654","display_name":"Daniel H. Palmer","orcid":"https://orcid.org/0000-0002-5766-9990"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Palmer","raw_affiliation_strings":["Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079524945","display_name":"Hugo Murua Escobar","orcid":"https://orcid.org/0000-0001-7123-7986"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hugo Murua Escobar","raw_affiliation_strings":["Department of Medicine, Clinic III, Hematology, Oncology, Palliative Medicine, Rostock University Medical Center, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Clinic III, Hematology, Oncology, Palliative Medicine, Rostock University Medical Center, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053029549","display_name":"Anne Schwerk","orcid":"https://orcid.org/0000-0002-5014-5289"},"institutions":[{"id":"https://openalex.org/I4210138188","display_name":"Centogene (Germany)","ror":"https://ror.org/03ccx3r49","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210138188"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anne Schwerk","raw_affiliation_strings":["CENTOGENE GmbH, Am Strande 7, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CENTOGENE GmbH, Am Strande 7, Rostock, Germany","institution_ids":["https://openalex.org/I4210138188"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089023752","display_name":"Georg Fuellen","orcid":"https://orcid.org/0000-0002-4994-9829"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Georg Fuellen","raw_affiliation_strings":["Centre for Transdisciplinary Neurosciences Rostock, Research Focus Oncology and Ageing of Individuals and Society, Interdisciplinary Faculty, Rostock, Germany","Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany"],"raw_orcid":"https://orcid.org/0000-0002-4994-9829","affiliations":[{"raw_affiliation_string":"Centre for Transdisciplinary Neurosciences Rostock, Research Focus Oncology and Ageing of Individuals and Society, Interdisciplinary Faculty, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]},{"raw_affiliation_string":"Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock University Medical Center, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089023752"],"corresponding_institution_ids":["https://openalex.org/I4665924"],"apc_list":{"value":4151,"currency":"USD","value_usd":4151},"apc_paid":{"value":4151,"currency":"USD","value_usd":4151},"fwci":1.2639,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.78340448,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5263549089431763},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47827088832855225},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34786978363990784},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22376790642738342}],"concepts":[{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5263549089431763},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47827088832855225},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34786978363990784},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22376790642738342}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac133","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac133/43745667/bbac133.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35453145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35453145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9116218","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9116218","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac133","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac133","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac133/43745667/bbac133.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3997605821","display_name":null,"funder_award_id":"FKZ 03VP06230","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4381481915","display_name":null,"funder_award_id":"01ZX1903A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G66126965","display_name":null,"funder_award_id":"03VP06230","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7618430569","display_name":null,"funder_award_id":"FKZ 01ZX1903A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7621194933","display_name":"Validating C. elegans healthspan model for better understanding factors causing health and disease, to develop evidence based prevention, diagnostic, therapeutic and other strategies.","funder_award_id":"633589","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4224316211.pdf","grobid_xml":"https://content.openalex.org/works/W4224316211.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W930928758","https://openalex.org/W1956343362","https://openalex.org/W2018663224","https://openalex.org/W2161771297","https://openalex.org/W2165698076","https://openalex.org/W2559655401","https://openalex.org/W2606715885","https://openalex.org/W2612690371","https://openalex.org/W2738019036","https://openalex.org/W2895507097","https://openalex.org/W2901139514","https://openalex.org/W2901677030","https://openalex.org/W2909372163","https://openalex.org/W2945183595","https://openalex.org/W2946395693","https://openalex.org/W2952391626","https://openalex.org/W2954825129","https://openalex.org/W2955502047","https://openalex.org/W2955754489","https://openalex.org/W2964315448","https://openalex.org/W2965552103","https://openalex.org/W2970921286","https://openalex.org/W2972751199","https://openalex.org/W2978541146","https://openalex.org/W3007369322","https://openalex.org/W3013568031","https://openalex.org/W3041133507","https://openalex.org/W3042645205","https://openalex.org/W3047129750","https://openalex.org/W3084582619","https://openalex.org/W3094540299","https://openalex.org/W3112600195","https://openalex.org/W3117464799","https://openalex.org/W3122030922","https://openalex.org/W3123158393","https://openalex.org/W3149695318","https://openalex.org/W3165645117","https://openalex.org/W3210942885","https://openalex.org/W3214112664","https://openalex.org/W4200384436","https://openalex.org/W4200595400","https://openalex.org/W4245551996","https://openalex.org/W4246999471","https://openalex.org/W4247924304","https://openalex.org/W4287592653","https://openalex.org/W4287995041","https://openalex.org/W6771791706","https://openalex.org/W6786956262"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Accurate":[0],"transfer":[1,106,133,184,232],"learning":[2,107,111,134,185,233],"of":[3,44,79,112,226,231,234],"clinical":[4,195,235],"outcomes":[5,199],"from":[6,30],"one":[7],"cellular":[8],"context":[9],"to":[10,34,56,87,102,109,124,160,193],"another,":[11],"between":[12],"cell":[13],"types,":[14],"developmental":[15],"stages,":[16],"omics":[17],"modalities":[18],"or":[19,53],"species,":[20],"is":[21,40,82,141,156],"considered":[22],"tremendously":[23],"useful.":[24],"When":[25],"transferring":[26,119],"a":[27,31,35,77,143,158,213,221],"prediction":[28],"task":[29,147],"source":[32,59,86,117,152],"domain":[33],"target":[36,49,62,99,126,139],"domain,":[37,50,118,127],"what":[38],"counts":[39],"the":[41,45,48,58,61,68,85,91,110,113,116,125,129,138,151,163,166,170,173,209,218,227],"high":[42],"quality":[43],"predictions":[46,89],"in":[47,84,90,115,165,172,197],"requiring":[51],"states":[52],"processes":[54],"common":[55],"both":[57],"and":[60,179,216,223,229],"that":[63,81],"can":[64],"be":[65],"learned":[66,83],"by":[67,71],"predictor":[69,114,140],"reflected":[70],"shared":[72],"denominators.":[73],"These":[74],"may":[75],"form":[76],"compendium":[78],"knowledge":[80],"enable":[88],"target,":[92],"usually":[93],"with":[94,150],"few,":[95],"if":[96],"any,":[97],"labeled":[98],"training":[100],"samples":[101],"learn":[103],"from.":[104],"Transductive":[105],"refers":[108],"its":[120],"outcome":[121],"label":[122],"calculations":[123],"considering":[128],"same":[130],"task.":[131],"Inductive":[132],"considers":[135],"cases":[136],"where":[137],"performing":[142],"different":[144],"yet":[145],"related":[146],"as":[148],"compared":[149],"predictor.":[153],"Often,":[154],"there":[155],"also":[157],"need":[159],"first":[161],"map":[162],"variables":[164,171],"input/feature":[167],"spaces":[168],"and/or":[169],"output/outcome":[174],"spaces.":[175],"We":[176],"here":[177],"discuss":[178],"juxtapose":[180],"various":[181],"recently":[182],"published":[183],"approaches,":[186],"specifically":[187],"designed":[188],"(or":[189],"at":[190],"least":[191],"adaptable)":[192],"predict":[194],"(human":[196],"vivo)":[198],"based":[200],"on":[201],"preclinical":[202],"(mostly":[203],"animal-based)":[204],"molecular":[205],"data,":[206],"towards":[207],"finding":[208],"right":[210],"tool":[211],"for":[212,220],"given":[214],"task,":[215],"paving":[217],"way":[219],"comprehensive":[222],"systematic":[224],"comparison":[225],"suitability":[228],"accuracy":[230],"outcomes.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
