{"id":"https://openalex.org/W4226129001","doi":"https://doi.org/10.1093/bib/bbac110","title":"Privacy preserving validation for multiomic prediction models","display_name":"Privacy preserving validation for multiomic prediction models","publication_year":2022,"publication_date":"2022-03-17","ids":{"openalex":"https://openalex.org/W4226129001","doi":"https://doi.org/10.1093/bib/bbac110","pmid":"https://pubmed.ncbi.nlm.nih.gov/35388408"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac110","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac110","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac110/43745549/bbac110.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac110/43745549/bbac110.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014098711","display_name":"Talal Ahmed","orcid":"https://orcid.org/0000-0002-5383-5349"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Talal Ahmed","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":"https://orcid.org/0000-0002-5383-5349","affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066471235","display_name":"Mark Carty","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A Carty","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059943023","display_name":"St\u00e9phane Wenric","orcid":"https://orcid.org/0000-0001-5625-2133"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephane Wenric","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063585604","display_name":"Jonathan R. Dry","orcid":"https://orcid.org/0000-0002-1640-2616"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan R Dry","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":"https://orcid.org/0000-0002-1640-2616","affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054698030","display_name":"Ameen A. Salahudeen","orcid":"https://orcid.org/0000-0001-9037-3481"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ameen A Salahudeen","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006360401","display_name":"Aly A. Khan","orcid":"https://orcid.org/0000-0003-3933-8538"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aly A Khan","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040543626","display_name":"Eric Lefkofsky","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Lefkofsky","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021041237","display_name":"Martin C. Stumpe","orcid":"https://orcid.org/0000-0003-1402-6749"},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin C Stumpe","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112891915","display_name":"Raphael Pelossof","orcid":null},"institutions":[{"id":"https://openalex.org/I4210114883","display_name":"Tempus Labs (United States)","ror":"https://ror.org/01gbymr57","country_code":"US","type":"company","lineage":["https://openalex.org/I4210114883"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Raphael Pelossof","raw_affiliation_strings":["Tempus Labs Inc., Chicago, IL 60654, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tempus Labs Inc., Chicago, IL 60654, USA","institution_ids":["https://openalex.org/I4210114883"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5112891915"],"corresponding_institution_ids":["https://openalex.org/I4210114883"],"apc_list":{"value":4151,"currency":"USD","value_usd":4151},"apc_paid":{"value":4151,"currency":"USD","value_usd":4151},"fwci":0.0843,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.32180802,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7983568906784058},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.4810657501220703},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4687260389328003},{"id":"https://openalex.org/keywords/aggregate","display_name":"Aggregate (composite)","score":0.44432011246681213},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3666003942489624},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3423284590244293},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.13237780332565308},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0723482072353363}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7983568906784058},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.4810657501220703},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4687260389328003},{"id":"https://openalex.org/C4679612","wikidata":"https://www.wikidata.org/wiki/Q866298","display_name":"Aggregate (composite)","level":2,"score":0.44432011246681213},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3666003942489624},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3423284590244293},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.13237780332565308},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0723482072353363},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018907","descriptor_name":"Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018907","descriptor_name":"Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018907","descriptor_name":"Privacy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac110","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac110","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac110/43745549/bbac110.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35388408","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35388408","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9116386","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9116386","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac110","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac110","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac110/43745549/bbac110.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4226129001.pdf","grobid_xml":"https://content.openalex.org/works/W4226129001.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1934094702","https://openalex.org/W1967220865","https://openalex.org/W1987971958","https://openalex.org/W2072719872","https://openalex.org/W2096192437","https://openalex.org/W2105829583","https://openalex.org/W2107665951","https://openalex.org/W2115528316","https://openalex.org/W2122982115","https://openalex.org/W2146512944","https://openalex.org/W2156527837","https://openalex.org/W2167277498","https://openalex.org/W2285093314","https://openalex.org/W2794521141","https://openalex.org/W2796153844","https://openalex.org/W2807140344","https://openalex.org/W2942108345","https://openalex.org/W2942880491","https://openalex.org/W2949177718","https://openalex.org/W2965552103","https://openalex.org/W2975497362","https://openalex.org/W2984472267","https://openalex.org/W3002417351","https://openalex.org/W3045108339","https://openalex.org/W3088521497","https://openalex.org/W4248175462","https://openalex.org/W6668752669","https://openalex.org/W6783699342"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"Reproducibility":[0],"of":[1,43,69,90,107],"results":[2],"obtained":[3],"using":[4],"ribonucleic":[5],"acid":[6],"(RNA)":[7],"data":[8,61,71,101,113],"across":[9,45],"labs":[10],"remains":[11],"a":[12],"major":[13],"hurdle":[14],"in":[15,33],"cancer":[16,135],"research.":[17],"Often,":[18],"molecular":[19,91],"predictors":[20,44,73],"trained":[21],"on":[22,132,151],"one":[23],"dataset":[24],"cannot":[25],"be":[26],"applied":[27],"to":[28,31,59,96,160,165],"another":[29],"due":[30],"differences":[32],"RNA":[34,49,83],"library":[35],"preparation":[36],"and":[37,121,130,139,164],"quantification,":[38],"which":[39,65],"inhibits":[40],"the":[41,67,88],"validation":[42,152],"labs.":[46],"While":[47],"current":[48,125],"correction":[50,84,126,158],"algorithms":[51],"reduce":[52],"these":[53],"differences,":[54],"they":[55],"require":[56],"simultaneous":[57],"access":[58,95],"patient-level":[60,97],"from":[62],"all":[63],"datasets,":[64],"necessitates":[66],"sharing":[68,75],"training":[70],"for":[72],"when":[74],"predictors.":[76],"Here,":[77],"we":[78],"describe":[79],"SpinAdapt,":[80],"an":[81,116],"unsupervised":[82],"algorithm":[85],"that":[86],"enables":[87],"transfer":[89],"models":[92],"without":[93],"requiring":[94],"data.":[98],"It":[99],"computes":[100],"corrections":[102],"only":[103],"via":[104],"aggregate":[105],"statistics":[106],"each":[108],"dataset,":[109],"thereby":[110,147],"maintaining":[111],"patient":[112,167],"privacy.":[114,168],"Despite":[115],"inherent":[117],"trade-off":[118],"between":[119],"privacy":[120],"performance,":[122],"SpinAdapt":[123,142],"outperforms":[124],"methods,":[127],"like":[128],"Seurat":[129],"ComBat,":[131],"publicly":[133],"available":[134],"studies,":[136],"including":[137],"TCGA":[138],"ICGC.":[140],"Furthermore,":[141],"can":[143],"correct":[144],"new":[145],"samples,":[146],"enabling":[148],"unbiased":[149],"evaluation":[150],"cohorts.":[153],"We":[154],"expect":[155],"this":[156],"novel":[157],"paradigm":[159],"enhance":[161],"research":[162],"reproducibility":[163],"preserve":[166]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
