{"id":"https://openalex.org/W4214687431","doi":"https://doi.org/10.1093/bib/bbac101","title":"Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis","display_name":"Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4214687431","doi":"https://doi.org/10.1093/bib/bbac101","pmid":"https://pubmed.ncbi.nlm.nih.gov/35381599"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac101","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011237766","display_name":"Mariella Bonomo","orcid":"https://orcid.org/0000-0002-1536-0872"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mariella Bonomo","raw_affiliation_strings":["Department of Engineering, University of Palermo, Palermo, 90121, Italy, Palermo"],"affiliations":[{"raw_affiliation_string":"Department of Engineering, University of Palermo, Palermo, 90121, Italy, Palermo","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078881318","display_name":"Raffaele Giancarlo","orcid":"https://orcid.org/0000-0002-6286-8871"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Raffaele Giancarlo","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Palermo, Palermo, 90121, Italy, Palermo"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Palermo, Palermo, 90121, Italy, Palermo","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038876894","display_name":"Daniele Greco","orcid":null},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniele Greco","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Palermo, Palermo, 90121, Italy, Palermo"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Palermo, Palermo, 90121, Italy, Palermo","institution_ids":["https://openalex.org/I900890020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047319643","display_name":"Simona E. Rombo","orcid":"https://orcid.org/0000-0003-3833-835X"},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Simona E Rombo","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Palermo, Palermo, 90121, Italy, Palermo"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Palermo, Palermo, 90121, Italy, Palermo","institution_ids":["https://openalex.org/I900890020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047319643"],"corresponding_institution_ids":["https://openalex.org/I900890020"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.5147,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60057747,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.7543562650680542},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6866582036018372},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6427134871482849},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5581719875335693},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5383217930793762},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.5245794653892517},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.51758873462677},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5034789443016052},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4692167043685913},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.46603697538375854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42901676893234253},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.42514485120773315},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4188714623451233},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3405762314796448},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3190712630748749},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31780391931533813},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.247059166431427},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1955469846725464},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18073347210884094}],"concepts":[{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.7543562650680542},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6866582036018372},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6427134871482849},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5581719875335693},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5383217930793762},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.5245794653892517},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.51758873462677},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5034789443016052},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4692167043685913},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.46603697538375854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42901676893234253},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.42514485120773315},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4188714623451233},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3405762314796448},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3190712630748749},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31780391931533813},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.247059166431427},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1955469846725464},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18073347210884094},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac101","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac101","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35381599","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35381599","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:iris.unipa.it:10447/574385","is_oa":false,"landing_page_url":"https://hdl.handle.net/10447/574385","pdf_url":null,"source":{"id":"https://openalex.org/S4306401065","display_name":"Nova Science Publishers (Nova Science Publishers, Inc.)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W118100147","https://openalex.org/W1490161904","https://openalex.org/W1502421007","https://openalex.org/W1525985997","https://openalex.org/W1970913835","https://openalex.org/W1971421925","https://openalex.org/W1988496202","https://openalex.org/W1989810298","https://openalex.org/W1995213405","https://openalex.org/W1997343461","https://openalex.org/W2005740247","https://openalex.org/W2006683252","https://openalex.org/W2017117968","https://openalex.org/W2018045523","https://openalex.org/W2026595597","https://openalex.org/W2034166503","https://openalex.org/W2038920443","https://openalex.org/W2050721857","https://openalex.org/W2056124433","https://openalex.org/W2056944867","https://openalex.org/W2062533676","https://openalex.org/W2063244649","https://openalex.org/W2067802532","https://openalex.org/W2077128508","https://openalex.org/W2083045667","https://openalex.org/W2089125183","https://openalex.org/W2101216488","https://openalex.org/W2104812688","https://openalex.org/W2109248504","https://openalex.org/W2109555487","https://openalex.org/W2110620844","https://openalex.org/W2130377051","https://openalex.org/W2134695923","https://openalex.org/W2137786672","https://openalex.org/W2140462113","https://openalex.org/W2152285853","https://openalex.org/W2152970345","https://openalex.org/W2153624566","https://openalex.org/W2161409973","https://openalex.org/W2279856703","https://openalex.org/W2296312486","https://openalex.org/W2607153830","https://openalex.org/W2793977993","https://openalex.org/W2807869290","https://openalex.org/W3117562192","https://openalex.org/W4248776151","https://openalex.org/W4253970912","https://openalex.org/W4254962106","https://openalex.org/W4256046779","https://openalex.org/W6651855452","https://openalex.org/W6664702507","https://openalex.org/W6694912060","https://openalex.org/W6787498463"],"related_works":["https://openalex.org/W4385565564","https://openalex.org/W2074530025","https://openalex.org/W3199233695","https://openalex.org/W3093924713","https://openalex.org/W4251279116","https://openalex.org/W2034972911","https://openalex.org/W1831348798","https://openalex.org/W2098756340","https://openalex.org/W2169438035","https://openalex.org/W2468446668"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Briefings":[5],"in":[6],"Bioinformatics":[7],"online.":[8]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
