{"id":"https://openalex.org/W4213430678","doi":"https://doi.org/10.1093/bib/bbac094","title":"Do deep learning models make a difference in the identification of antimicrobial peptides?","display_name":"Do deep learning models make a difference in the identification of antimicrobial peptides?","publication_year":2022,"publication_date":"2022-02-24","ids":{"openalex":"https://openalex.org/W4213430678","doi":"https://doi.org/10.1093/bib/bbac094","pmid":"https://pubmed.ncbi.nlm.nih.gov/35380616"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac094","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac094","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008729002","display_name":"C\u00e9sar R. Garc\u00eda\u2010Jacas","orcid":"https://orcid.org/0000-0002-3962-7658"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"C\u00e9sar R Garc\u00eda-Jacas","raw_affiliation_strings":["C\u00e1tedras CONACYT \u2013 Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"C\u00e1tedras CONACYT \u2013 Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico","institution_ids":["https://openalex.org/I64663401"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039626731","display_name":"Sergio A. Pinacho-Castellanos","orcid":"https://orcid.org/0000-0001-5783-352X"},"institutions":[{"id":"https://openalex.org/I59361560","display_name":"Instituto Polit\u00e9cnico Nacional","ror":"https://ror.org/059sp8j34","country_code":"MX","type":"education","lineage":["https://openalex.org/I59361560"]},{"id":"https://openalex.org/I64663401","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Sergio A Pinacho-Castellanos","raw_affiliation_strings":["Centro de Investigaci\u00f3n y Desarrollo de Tecnolog\u00eda Digital (CITEDI), Instituto Polit\u00e9cnico Nacional (IPN), 22435 Tijuana, Baja California, M\u00e9xico","Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n y Desarrollo de Tecnolog\u00eda Digital (CITEDI), Instituto Polit\u00e9cnico Nacional (IPN), 22435 Tijuana, Baja California, M\u00e9xico","institution_ids":["https://openalex.org/I59361560"]},{"raw_affiliation_string":"Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico","institution_ids":["https://openalex.org/I64663401"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040020151","display_name":"Luis A. Garc\u00eda\u2010Gonz\u00e1lez","orcid":"https://orcid.org/0000-0003-4021-3345"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Luis A Garc\u00eda-Gonz\u00e1lez","raw_affiliation_strings":["Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico","institution_ids":["https://openalex.org/I64663401"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075390665","display_name":"Carlos A. Brizuela","orcid":"https://orcid.org/0000-0003-4621-0380"},"institutions":[{"id":"https://openalex.org/I64663401","display_name":"Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada","ror":"https://ror.org/04znhwb73","country_code":"MX","type":"facility","lineage":["https://openalex.org/I64663401"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Carlos A Brizuela","raw_affiliation_strings":["Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Departamento de Ciencias de la Computaci\u00f3n, Centro de Investigaci\u00f3n Cient\u00edfica y de Educaci\u00f3n Superior de Ensenada (CICESE), 22860 Ensenada, Baja California, M\u00e9xico","institution_ids":["https://openalex.org/I64663401"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008729002"],"corresponding_institution_ids":["https://openalex.org/I64663401"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.8992,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.94889083,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.8571583032608032},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7932407855987549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.746961236000061},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.665205180644989},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6126950979232788},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5450910925865173},{"id":"https://openalex.org/keywords/model-selection","display_name":"Model selection","score":0.5303372144699097},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.5243752002716064},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5099145174026489},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48089054226875305},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.41821280121803284},{"id":"https://openalex.org/keywords/predictive-modelling","display_name":"Predictive modelling","score":0.4113258421421051},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.1418849229812622},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09997916221618652},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.073661208152771}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.8571583032608032},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7932407855987549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.746961236000061},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.665205180644989},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6126950979232788},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5450910925865173},{"id":"https://openalex.org/C93959086","wikidata":"https://www.wikidata.org/wiki/Q6888345","display_name":"Model selection","level":2,"score":0.5303372144699097},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.5243752002716064},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5099145174026489},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48089054226875305},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.41821280121803284},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.4113258421421051},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.1418849229812622},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09997916221618652},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.073661208152771},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac094","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac094","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35380616","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35380616","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":96,"referenced_works":["https://openalex.org/W1747747683","https://openalex.org/W1976178947","https://openalex.org/W1978444624","https://openalex.org/W1998064689","https://openalex.org/W2008343108","https://openalex.org/W2023294425","https://openalex.org/W2043286242","https://openalex.org/W2067402644","https://openalex.org/W2074681440","https://openalex.org/W2081635953","https://openalex.org/W2097834518","https://openalex.org/W2103496339","https://openalex.org/W2112862199","https://openalex.org/W2114247676","https://openalex.org/W2115629999","https://openalex.org/W2119387367","https://openalex.org/W2126401726","https://openalex.org/W2128245586","https://openalex.org/W2131204071","https://openalex.org/W2140353364","https://openalex.org/W2143210482","https://openalex.org/W2163316049","https://openalex.org/W2169875641","https://openalex.org/W2280681870","https://openalex.org/W2511835277","https://openalex.org/W2523168882","https://openalex.org/W2541170635","https://openalex.org/W2588467130","https://openalex.org/W2739980134","https://openalex.org/W2766196489","https://openalex.org/W2789918675","https://openalex.org/W2791848964","https://openalex.org/W2792378492","https://openalex.org/W2793168264","https://openalex.org/W2807001312","https://openalex.org/W2807152882","https://openalex.org/W2890190333","https://openalex.org/W2892181857","https://openalex.org/W2894863211","https://openalex.org/W2897377848","https://openalex.org/W2899724706","https://openalex.org/W2899841051","https://openalex.org/W2900456395","https://openalex.org/W2905300510","https://openalex.org/W2911964244","https://openalex.org/W2914712884","https://openalex.org/W2916168844","https://openalex.org/W2920961832","https://openalex.org/W2936599975","https://openalex.org/W2943554879","https://openalex.org/W2945976633","https://openalex.org/W2946321682","https://openalex.org/W2948009788","https://openalex.org/W2948272581","https://openalex.org/W2951765074","https://openalex.org/W2953705189","https://openalex.org/W2964278775","https://openalex.org/W2964774153","https://openalex.org/W2965044151","https://openalex.org/W2967960129","https://openalex.org/W2968073288","https://openalex.org/W2981731882","https://openalex.org/W2984592028","https://openalex.org/W2995523160","https://openalex.org/W2998197489","https://openalex.org/W3002565078","https://openalex.org/W3007215678","https://openalex.org/W3010686554","https://openalex.org/W3023042104","https://openalex.org/W3024761859","https://openalex.org/W3025501158","https://openalex.org/W3081999257","https://openalex.org/W3083198574","https://openalex.org/W3124474911","https://openalex.org/W3127432888","https://openalex.org/W3146944767","https://openalex.org/W3150808126","https://openalex.org/W3160837014","https://openalex.org/W3164453494","https://openalex.org/W3164698295","https://openalex.org/W3164941572","https://openalex.org/W3165408972","https://openalex.org/W3169919178","https://openalex.org/W3178663131","https://openalex.org/W3205595869","https://openalex.org/W3217372366","https://openalex.org/W4211260588","https://openalex.org/W4213151958","https://openalex.org/W4235106149","https://openalex.org/W4248018214","https://openalex.org/W4249920046","https://openalex.org/W4255467651","https://openalex.org/W4301186107","https://openalex.org/W6667333778","https://openalex.org/W6718343364","https://openalex.org/W6796412539"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2341842940","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2329895846"],"abstract_inverted_index":{"In":[0],"the":[1,21,53,67,81,94,132,145,155,197,220,227,235,262,279],"last":[2],"few":[3],"decades,":[4],"antimicrobial":[5,29],"peptides":[6],"(AMPs)":[7],"have":[8],"been":[9],"explored":[10],"as":[11,46,73],"an":[12],"alternative":[13],"to":[14,27,60,90,118,122,150,169,219,239,242,272],"classical":[15],"antibiotics,":[16],"which":[17,77],"in":[18,31,93,131,196],"turn":[19],"motivated":[20],"development":[22],"of":[23,36,57,86,97,134,158,199,205,229,264],"machine":[24],"learning":[25,121,231,266],"models":[26,51,109,112,136,166,175,190,195,206,241,248],"predict":[28],"activities":[30],"peptides.":[32],"The":[33,69,103,185],"first":[34],"generation":[35],"these":[37],"predictors":[38],"was":[39],"filled":[40],"with":[41],"what":[42],"is":[43],"now":[44],"known":[45,72],"shallow":[47,111,174,194,247],"learning-based":[48,75],"models.":[49,68,160],"These":[50],"require":[52],"computation":[54,83],"and":[55,65,84,201,252],"selection":[56,85],"molecular":[58],"descriptors":[59],"characterize":[61],"each":[62],"peptide":[63],"sequence":[64],"train":[66],"second":[70],"generation,":[71],"deep":[74,108,120,135,159,165,189,230,265],"models,":[76],"no":[78],"longer":[79],"requires":[80],"explicit":[82],"those":[87],"descriptors,":[88],"started":[89],"be":[91,234],"used":[92],"prediction":[95],"task":[96],"AMPs":[98],"just":[99],"four":[100],"years":[101],"ago.":[102],"superior":[104],"performance":[105,157,276],"claimed":[106],"by":[107,176],"regarding":[110],"has":[113],"created":[114],"a":[115],"prevalent":[116],"inertia":[117],"using":[119],"identify":[123,243],"AMPs.":[124],"However,":[125],"methodological":[126],"flaws":[127],"and/or":[128],"modeling":[129],"biases":[130],"building":[133],"do":[137,191],"not":[138,192,233],"support":[139],"such":[140],"superiority.":[141],"Here,":[142],"we":[143,162,224,260],"analyze":[144,163],"main":[146],"pitfalls":[147],"that":[148,188,202,226],"led":[149],"establish":[151],"biased":[152],"conclusions":[153],"on":[154,180],"leading":[156],"Also,":[161],"whether":[164],"truly":[167],"contribute":[168],"achieve":[170,249],"better":[171,275],"predictions":[172,213],"than":[173],"performing":[177],"fair":[178],"studies":[179],"different":[181],"state-of-the-art":[182],"benchmarking":[183],"datasets.":[184],"experiments":[186],"reveal":[187],"outperform":[193],"classification":[198],"AMPs,":[200,244],"both":[203],"types":[204],"codify":[207],"similar":[208],"chemical":[209],"information":[210],"since":[211],"their":[212],"are":[214,253],"highly":[215],"similar.":[216],"Thus,":[217],"according":[218],"currently":[221],"available":[222],"datasets,":[223],"conclude":[225],"use":[228,263],"could":[232],"most":[236],"suitable":[237],"approach":[238],"develop":[240],"mainly":[245],"because":[246],"comparable-to-superior":[250],"performances":[251],"simpler":[254],"(Ockham's":[255],"razor":[256],"principle).":[257],"Even":[258],"so,":[259],"suggest":[261],"only":[267],"when":[268],"its":[269],"capabilities":[270],"lead":[271],"obtaining":[273],"significantly":[274],"gains":[277],"worth":[278],"additional":[280],"computational":[281],"cost.":[282]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
