{"id":"https://openalex.org/W4212938657","doi":"https://doi.org/10.1093/bib/bbac081","title":"Hybrid modelling of biological systems: current progress and future prospects","display_name":"Hybrid modelling of biological systems: current progress and future prospects","publication_year":2022,"publication_date":"2022-02-17","ids":{"openalex":"https://openalex.org/W4212938657","doi":"https://doi.org/10.1093/bib/bbac081","pmid":"https://pubmed.ncbi.nlm.nih.gov/35352101"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac081","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac081/43745842/bbac081.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac081/43745842/bbac081.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100394589","display_name":"Fei Liu","orcid":"https://orcid.org/0000-0001-9415-0496"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Liu","raw_affiliation_strings":["School of Software Engineering, South China University of Technology, Guangzhou 510006, P.R. China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, South China University of Technology, Guangzhou 510006, P.R. China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002026696","display_name":"Monika Heiner","orcid":"https://orcid.org/0000-0003-1815-1205"},"institutions":[{"id":"https://openalex.org/I51783024","display_name":"Brandenburg University of Technology Cottbus-Senftenberg","ror":"https://ror.org/02wxx3e24","country_code":"DE","type":"education","lineage":["https://openalex.org/I51783024"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Monika Heiner","raw_affiliation_strings":["Department of Computer Science, Brandenburg University of Technology Cottbus-Senftenberg, Cottbus 03046, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brandenburg University of Technology Cottbus-Senftenberg, Cottbus 03046, Germany","institution_ids":["https://openalex.org/I51783024"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102913036","display_name":"David Gilbert","orcid":"https://orcid.org/0000-0002-8872-4294"},"institutions":[{"id":"https://openalex.org/I59433898","display_name":"Brunel University of London","ror":"https://ror.org/00dn4t376","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I59433898"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Gilbert","raw_affiliation_strings":["Department of Computer Science, Brunel University London, Middlesex UB8 3PH, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brunel University London, Middlesex UB8 3PH, UK","institution_ids":["https://openalex.org/I59433898"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100394589"],"corresponding_institution_ids":["https://openalex.org/I90610280"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":2.3444,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.89174773,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/current","display_name":"Current (fluid)","score":0.6567350029945374},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5397852659225464},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.4034096300601959},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14216920733451843},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.08060956001281738},{"id":"https://openalex.org/keywords/oceanography","display_name":"Oceanography","score":0.0768696665763855}],"concepts":[{"id":"https://openalex.org/C148043351","wikidata":"https://www.wikidata.org/wiki/Q4456944","display_name":"Current (fluid)","level":2,"score":0.6567350029945374},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5397852659225464},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.4034096300601959},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14216920733451843},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.08060956001281738},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0768696665763855}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbac081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac081","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac081/43745842/bbac081.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35352101","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35352101","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:bura.brunel.ac.uk:2438/24529","is_oa":true,"landing_page_url":"https://bura.brunel.ac.uk/handle/2438/24529","pdf_url":null,"source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9116374","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9116374","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac081","pdf_url":"https://academic.oup.com/bib/article-pdf/23/3/bbac081/43745842/bbac081.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6926612094","display_name":null,"funder_award_id":"61873094","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4212938657.pdf","grobid_xml":"https://content.openalex.org/works/W4212938657.grobid-xml"},"referenced_works_count":104,"referenced_works":["https://openalex.org/W95898642","https://openalex.org/W180888965","https://openalex.org/W1496686022","https://openalex.org/W1505489763","https://openalex.org/W1573621493","https://openalex.org/W1893505266","https://openalex.org/W1974161639","https://openalex.org/W1978486653","https://openalex.org/W1996109622","https://openalex.org/W2003003919","https://openalex.org/W2003115760","https://openalex.org/W2009481339","https://openalex.org/W2009913017","https://openalex.org/W2011835017","https://openalex.org/W2012047089","https://openalex.org/W2015594324","https://openalex.org/W2017260253","https://openalex.org/W2023568310","https://openalex.org/W2024060242","https://openalex.org/W2046854548","https://openalex.org/W2047089074","https://openalex.org/W2049982841","https://openalex.org/W2054779024","https://openalex.org/W2061245977","https://openalex.org/W2062245653","https://openalex.org/W2064656357","https://openalex.org/W2068359975","https://openalex.org/W2071962206","https://openalex.org/W2072670807","https://openalex.org/W2074401358","https://openalex.org/W2078355959","https://openalex.org/W2078734278","https://openalex.org/W2081781433","https://openalex.org/W2082948758","https://openalex.org/W2084924279","https://openalex.org/W2088062845","https://openalex.org/W2091215057","https://openalex.org/W2096328440","https://openalex.org/W2102653059","https://openalex.org/W2107333582","https://openalex.org/W2107563431","https://openalex.org/W2110796675","https://openalex.org/W2111823238","https://openalex.org/W2114888488","https://openalex.org/W2122902176","https://openalex.org/W2125739093","https://openalex.org/W2126176298","https://openalex.org/W2127262798","https://openalex.org/W2135249635","https://openalex.org/W2142171814","https://openalex.org/W2150908245","https://openalex.org/W2154601808","https://openalex.org/W2155418451","https://openalex.org/W2158497698","https://openalex.org/W2163051906","https://openalex.org/W2167919951","https://openalex.org/W2169509065","https://openalex.org/W2171501814","https://openalex.org/W2171594815","https://openalex.org/W2267176325","https://openalex.org/W2278893082","https://openalex.org/W2342443391","https://openalex.org/W2513008430","https://openalex.org/W2529551304","https://openalex.org/W2563961519","https://openalex.org/W2611943439","https://openalex.org/W2621620646","https://openalex.org/W2741871742","https://openalex.org/W2745090763","https://openalex.org/W2763427691","https://openalex.org/W2766481824","https://openalex.org/W2799084046","https://openalex.org/W2805310212","https://openalex.org/W2805549187","https://openalex.org/W2806412533","https://openalex.org/W2888698325","https://openalex.org/W2911948847","https://openalex.org/W2914824131","https://openalex.org/W2938329024","https://openalex.org/W2948600471","https://openalex.org/W2950427239","https://openalex.org/W2990683873","https://openalex.org/W2996607128","https://openalex.org/W3013637643","https://openalex.org/W3046630804","https://openalex.org/W3048546438","https://openalex.org/W3154732821","https://openalex.org/W3189930489","https://openalex.org/W3198639317","https://openalex.org/W4200076853","https://openalex.org/W4205962345","https://openalex.org/W4206656620","https://openalex.org/W4233292973","https://openalex.org/W4238536640","https://openalex.org/W4255001976","https://openalex.org/W4285667704","https://openalex.org/W6634244330","https://openalex.org/W6643786885","https://openalex.org/W6662318949","https://openalex.org/W6670128585","https://openalex.org/W6685218434","https://openalex.org/W6745199320","https://openalex.org/W6759645932","https://openalex.org/W6944532054"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Integrated":[0],"modelling":[1,36,43,53,71,93],"of":[2,17,27,44,94],"biological":[3,45,95],"systems":[4,19,57],"is":[5],"becoming":[6],"a":[7,24],"necessity":[8],"for":[9,56,89],"constructing":[10],"models":[11],"containing":[12],"the":[13],"major":[14],"biochemical":[15],"processes":[16],"such":[18],"in":[20],"order":[21],"to":[22,31,40,75],"obtain":[23],"holistic":[25],"understanding":[26],"their":[28],"dynamics":[29],"and":[30,73],"elucidate":[32],"emergent":[33],"behaviours.":[34],"Hybrid":[35],"methods":[37],"are":[38,63,67],"crucial":[39],"achieve":[41],"integrated":[42,92],"systems.":[46,96],"This":[47],"paper":[48],"reviews":[49],"currently":[50],"popular":[51],"hybrid":[52,87],"methods,":[54],"developed":[55],"biology,":[58],"mainly":[59],"revealing":[60],"why":[61],"they":[62,66],"proposed,":[64],"how":[65,74],"formed":[68],"from":[69],"single":[70],"formalisms":[72],"simulate":[76],"them.":[77],"By":[78],"doing":[79],"this,":[80],"we":[81],"identify":[82],"future":[83],"research":[84],"requirements":[85],"regarding":[86],"approaches":[88],"further":[90],"promoting":[91]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
