{"id":"https://openalex.org/W4212796599","doi":"https://doi.org/10.1093/bib/bbac080","title":"Review on predicting pairwise relationships between human microbes, drugs and diseases: from biological data to computational models","display_name":"Review on predicting pairwise relationships between human microbes, drugs and diseases: from biological data to computational models","publication_year":2022,"publication_date":"2022-02-16","ids":{"openalex":"https://openalex.org/W4212796599","doi":"https://doi.org/10.1093/bib/bbac080","pmid":"https://pubmed.ncbi.nlm.nih.gov/35325024"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac080","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac080","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100710637","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5065-8447"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014301388","display_name":"Yaqin Tan","orcid":"https://orcid.org/0000-0003-2191-1834"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaqin Tan","raw_affiliation_strings":["College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100435416","display_name":"Xiaoyu Yang","orcid":"https://orcid.org/0000-0001-8858-8619"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu Yang","raw_affiliation_strings":["College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082424236","display_name":"Linai Kuang","orcid":"https://orcid.org/0000-0002-4408-3640"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linai Kuang","raw_affiliation_strings":["Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, 411105, Hunan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091598714","display_name":"Pengyao Ping","orcid":"https://orcid.org/0000-0002-1829-3273"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Pengyao Ping","raw_affiliation_strings":["College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, 410022, Hunan, China","institution_ids":["https://openalex.org/I198357462"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5091598714","https://openalex.org/A5100710637"],"corresponding_institution_ids":["https://openalex.org/I198357462","https://openalex.org/I4610292"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":4.5044,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.95968233,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7110252380371094},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7071132659912109},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5698325634002686},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5527365803718567},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5449671745300293},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5288832187652588},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5284861326217651},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49033546447753906},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4566974937915802},{"id":"https://openalex.org/keywords/non-negative-matrix-factorization","display_name":"Non-negative matrix factorization","score":0.4417249858379364},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.4231288433074951},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3413766026496887},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.304182767868042},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19942796230316162},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11264222860336304},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07028031349182129}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7110252380371094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7071132659912109},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5698325634002686},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5527365803718567},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5449671745300293},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5288832187652588},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5284861326217651},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49033546447753906},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4566974937915802},{"id":"https://openalex.org/C152671427","wikidata":"https://www.wikidata.org/wiki/Q10843505","display_name":"Non-negative matrix factorization","level":4,"score":0.4417249858379364},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.4231288433074951},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3413766026496887},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.304182767868042},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19942796230316162},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11264222860336304},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07028031349182129},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac080","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac080","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35325024","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35325024","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G252625122","display_name":null,"funder_award_id":"2019JJ70010","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G3107359239","display_name":null,"funder_award_id":"61873221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":190,"referenced_works":["https://openalex.org/W1528012351","https://openalex.org/W1530703867","https://openalex.org/W1576520375","https://openalex.org/W1959608418","https://openalex.org/W1966716734","https://openalex.org/W1967863517","https://openalex.org/W1976526581","https://openalex.org/W1979488516","https://openalex.org/W1984054151","https://openalex.org/W1998898494","https://openalex.org/W2007069550","https://openalex.org/W2008054523","https://openalex.org/W2009170813","https://openalex.org/W2009313526","https://openalex.org/W2012606594","https://openalex.org/W2020274161","https://openalex.org/W2021936091","https://openalex.org/W2026417691","https://openalex.org/W2031250362","https://openalex.org/W2031954078","https://openalex.org/W2034537627","https://openalex.org/W2050078980","https://openalex.org/W2063993968","https://openalex.org/W2070143609","https://openalex.org/W2073332363","https://openalex.org/W2077268918","https://openalex.org/W2083045667","https://openalex.org/W2103972604","https://openalex.org/W2113072832","https://openalex.org/W2119002393","https://openalex.org/W2119412782","https://openalex.org/W2119943416","https://openalex.org/W2123060905","https://openalex.org/W2124001239","https://openalex.org/W2128194876","https://openalex.org/W2128769815","https://openalex.org/W2135007932","https://openalex.org/W2154654747","https://openalex.org/W2159092541","https://openalex.org/W2159583324","https://openalex.org/W2165674132","https://openalex.org/W2166209362","https://openalex.org/W2177317049","https://openalex.org/W2256553158","https://openalex.org/W2322763599","https://openalex.org/W2346950316","https://openalex.org/W2402674527","https://openalex.org/W2482803382","https://openalex.org/W2510201597","https://openalex.org/W2537429907","https://openalex.org/W2562110925","https://openalex.org/W2567465856","https://openalex.org/W2576112076","https://openalex.org/W2579151866","https://openalex.org/W2579434750","https://openalex.org/W2590194234","https://openalex.org/W2599859080","https://openalex.org/W2612436700","https://openalex.org/W2739664659","https://openalex.org/W2743104969","https://openalex.org/W2752131265","https://openalex.org/W2765928324","https://openalex.org/W2767774008","https://openalex.org/W2767891136","https://openalex.org/W2768924715","https://openalex.org/W2769934873","https://openalex.org/W2776903811","https://openalex.org/W2790385355","https://openalex.org/W2792021903","https://openalex.org/W2799488589","https://openalex.org/W2801988201","https://openalex.org/W2805643613","https://openalex.org/W2806774580","https://openalex.org/W2806980256","https://openalex.org/W2807176368","https://openalex.org/W2809156537","https://openalex.org/W2810107880","https://openalex.org/W2827063976","https://openalex.org/W2883308936","https://openalex.org/W2885494203","https://openalex.org/W2886624004","https://openalex.org/W2892502396","https://openalex.org/W2894128290","https://openalex.org/W2896473060","https://openalex.org/W2898769300","https://openalex.org/W2901238493","https://openalex.org/W2901312953","https://openalex.org/W2902848175","https://openalex.org/W2903096015","https://openalex.org/W2907265097","https://openalex.org/W2911286998","https://openalex.org/W2913882083","https://openalex.org/W2915806464","https://openalex.org/W2916047525","https://openalex.org/W2916981547","https://openalex.org/W2918064359","https://openalex.org/W2918066696","https://openalex.org/W2922405516","https://openalex.org/W2922817064","https://openalex.org/W2933068012","https://openalex.org/W2936110251","https://openalex.org/W2938306835","https://openalex.org/W2946099214","https://openalex.org/W2947693568","https://openalex.org/W2948160364","https://openalex.org/W2952564192","https://openalex.org/W2957404091","https://openalex.org/W2960235084","https://openalex.org/W2960557205","https://openalex.org/W2961050676","https://openalex.org/W2962756421","https://openalex.org/W2963636339","https://openalex.org/W2963944272","https://openalex.org/W2964015378","https://openalex.org/W2967109100","https://openalex.org/W2969737152","https://openalex.org/W2970428221","https://openalex.org/W2980655992","https://openalex.org/W2982193101","https://openalex.org/W2985757832","https://openalex.org/W2988135813","https://openalex.org/W2990691215","https://openalex.org/W2995866605","https://openalex.org/W2996505894","https://openalex.org/W2997636257","https://openalex.org/W2997833976","https://openalex.org/W2998415747","https://openalex.org/W3000600836","https://openalex.org/W3005110075","https://openalex.org/W3005533091","https://openalex.org/W3005550222","https://openalex.org/W3006717925","https://openalex.org/W3010110722","https://openalex.org/W3011402647","https://openalex.org/W3015296677","https://openalex.org/W3015492777","https://openalex.org/W3017158857","https://openalex.org/W3019793073","https://openalex.org/W3022258762","https://openalex.org/W3033577323","https://openalex.org/W3034548692","https://openalex.org/W3037489518","https://openalex.org/W3045879648","https://openalex.org/W3047212992","https://openalex.org/W3048259272","https://openalex.org/W3048940314","https://openalex.org/W3080286031","https://openalex.org/W3084482269","https://openalex.org/W3090580605","https://openalex.org/W3093030756","https://openalex.org/W3093194543","https://openalex.org/W3094448726","https://openalex.org/W3096841817","https://openalex.org/W3096882650","https://openalex.org/W3097354806","https://openalex.org/W3097857367","https://openalex.org/W3106165797","https://openalex.org/W3109258806","https://openalex.org/W3113654230","https://openalex.org/W3116604690","https://openalex.org/W3119762536","https://openalex.org/W3119962804","https://openalex.org/W3135516327","https://openalex.org/W3156482783","https://openalex.org/W3157350212","https://openalex.org/W3159447716","https://openalex.org/W3162109809","https://openalex.org/W3170383918","https://openalex.org/W3172116557","https://openalex.org/W3174048174","https://openalex.org/W3178147479","https://openalex.org/W3183020242","https://openalex.org/W3192134500","https://openalex.org/W3194560733","https://openalex.org/W3201821663","https://openalex.org/W3211526433","https://openalex.org/W4211248483","https://openalex.org/W4235457527","https://openalex.org/W4248234957","https://openalex.org/W6634442568","https://openalex.org/W6646129266","https://openalex.org/W6662961022","https://openalex.org/W6712987211","https://openalex.org/W6726873649","https://openalex.org/W6767515201","https://openalex.org/W6781694043","https://openalex.org/W6785244979","https://openalex.org/W6794419696","https://openalex.org/W6794584276","https://openalex.org/W6803250940"],"related_works":["https://openalex.org/W4390394189","https://openalex.org/W2037504162","https://openalex.org/W2539013788","https://openalex.org/W2792706544","https://openalex.org/W1568451138","https://openalex.org/W2156699640","https://openalex.org/W2045265907","https://openalex.org/W2972997031","https://openalex.org/W34555840","https://openalex.org/W2146544734"],"abstract_inverted_index":{"In":[0],"recent":[1,49],"years,":[2],"with":[3],"the":[4,70,76,134],"rapid":[5],"development":[6],"of":[7,17,48,53,78,94,97,144],"techniques":[8],"in":[9,51,86,128],"bioinformatics":[10],"and":[11,40,59,84,112,119,126,132],"life":[12],"science,":[13],"a":[14,45,92,95],"considerable":[15],"quantity":[16],"biomedical":[18],"data":[19,63],"has":[20],"been":[21],"accumulated,":[22],"based":[23],"on":[24],"which":[25],"researchers":[26],"have":[27],"developed":[28],"various":[29],"computational":[30,65],"approaches":[31],"to":[32,64,75],"discover":[33],"potential":[34,54,79],"associations":[35],"between":[36,56,81],"human":[37],"microbes,":[38,57,82],"drugs":[39,58,83],"diseases.":[41],"This":[42],"paper":[43],"provides":[44],"comprehensive":[46],"overview":[47],"advances":[50],"prediction":[52],"correlations":[55],"diseases":[60,85],"from":[61],"biological":[62],"models.":[66],"Firstly,":[67],"we":[68,90,122,137],"introduced":[69],"widely":[71],"used":[72],"datasets":[73],"relevant":[74],"identification":[77],"relationships":[80],"detail.":[87],"And":[88],"then,":[89],"divided":[91],"series":[93],"lot":[96],"representative":[98],"computing":[99],"models":[100],"into":[101],"five":[102],"major":[103],"categories":[104],"including":[105],"network,":[106],"matrix":[107,109],"factorization,":[108],"completion,":[110],"regularization":[111],"artificial":[113],"neural":[114],"network":[115],"for":[116,141],"in-depth":[117],"discussion":[118],"comparison.":[120],"Finally,":[121],"analysed":[123],"possible":[124],"challenges":[125],"opportunities":[127],"this":[129],"research":[130],"area,":[131],"at":[133],"same":[135],"time":[136],"outlined":[138],"some":[139],"suggestions":[140],"further":[142],"improvement":[143],"predictive":[145],"performances":[146],"as":[147],"well.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
