{"id":"https://openalex.org/W4214830649","doi":"https://doi.org/10.1093/bib/bbac057","title":"ProSAP: a GUI software tool for statistical analysis and assessment of thermal stability data","display_name":"ProSAP: a GUI software tool for statistical analysis and assessment of thermal stability data","publication_year":2022,"publication_date":"2022-03-02","ids":{"openalex":"https://openalex.org/W4214830649","doi":"https://doi.org/10.1093/bib/bbac057","pmid":"https://pubmed.ncbi.nlm.nih.gov/35246677"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac057","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac057","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055786412","display_name":"Hongchao Ji","orcid":"https://orcid.org/0000-0002-7364-0741"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongchao Ji","raw_affiliation_strings":["Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083606216","display_name":"Xue Lu","orcid":"https://orcid.org/0000-0003-1900-0839"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xue Lu","raw_affiliation_strings":["Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004999828","display_name":"Zhenxiang Zheng","orcid":"https://orcid.org/0009-0005-7554-1324"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenxiang Zheng","raw_affiliation_strings":["Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101760728","display_name":"Siyuan Sun","orcid":"https://orcid.org/0000-0003-0003-2830"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyuan Sun","raw_affiliation_strings":["Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051693291","display_name":"Chris Soon Heng Tan","orcid":"https://orcid.org/0000-0002-8172-5235"},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chris Soon Heng Tan","raw_affiliation_strings":["Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China","institution_ids":["https://openalex.org/I3045169105"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5051693291"],"corresponding_institution_ids":["https://openalex.org/I3045169105"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.976,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.85616672,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6825220584869385},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6634091734886169},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5459988117218018},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5002508163452148},{"id":"https://openalex.org/keywords/statistical-analysis","display_name":"Statistical analysis","score":0.4908314645290375},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.47770336270332336},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4682627320289612},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4591192305088043},{"id":"https://openalex.org/keywords/nonparametric-statistics","display_name":"Nonparametric statistics","score":0.4365701973438263},{"id":"https://openalex.org/keywords/false-discovery-rate","display_name":"False discovery rate","score":0.43097320199012756},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.31070786714553833},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2067488729953766},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15966743230819702},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13956591486930847},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10482564568519592},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0950818657875061}],"concepts":[{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6825220584869385},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6634091734886169},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5459988117218018},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5002508163452148},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.4908314645290375},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.47770336270332336},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4682627320289612},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4591192305088043},{"id":"https://openalex.org/C102366305","wikidata":"https://www.wikidata.org/wiki/Q1097688","display_name":"Nonparametric statistics","level":2,"score":0.4365701973438263},{"id":"https://openalex.org/C193244246","wikidata":"https://www.wikidata.org/wiki/Q5432696","display_name":"False discovery rate","level":3,"score":0.43097320199012756},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.31070786714553833},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2067488729953766},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15966743230819702},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13956591486930847},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10482564568519592},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0950818657875061},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac057","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac057","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35246677","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35246677","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2071457919","display_name":null,"funder_award_id":"22074060","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G287987500","display_name":null,"funder_award_id":"22103036","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7123701003","display_name":null,"funder_award_id":"2021M691413","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1010312058","https://openalex.org/W1993251792","https://openalex.org/W1999608828","https://openalex.org/W2036503673","https://openalex.org/W2041440237","https://openalex.org/W2096863518","https://openalex.org/W2110151487","https://openalex.org/W2114104545","https://openalex.org/W2130116522","https://openalex.org/W2131321938","https://openalex.org/W2146512944","https://openalex.org/W2179438025","https://openalex.org/W2216761081","https://openalex.org/W2524972396","https://openalex.org/W2544360569","https://openalex.org/W2601488696","https://openalex.org/W2614148745","https://openalex.org/W2787587553","https://openalex.org/W2800803361","https://openalex.org/W2873517389","https://openalex.org/W2964686805","https://openalex.org/W2976915124","https://openalex.org/W2978874730","https://openalex.org/W2989449932","https://openalex.org/W3000219741","https://openalex.org/W3004874736","https://openalex.org/W3006371860","https://openalex.org/W3045904767","https://openalex.org/W3082270748","https://openalex.org/W3099234957","https://openalex.org/W3119767006","https://openalex.org/W3129213834","https://openalex.org/W3131784305","https://openalex.org/W3132932588","https://openalex.org/W3135825629","https://openalex.org/W3168771940","https://openalex.org/W6781790959"],"related_works":["https://openalex.org/W2389124870","https://openalex.org/W1921844237","https://openalex.org/W4300887971","https://openalex.org/W2168149717","https://openalex.org/W200978175","https://openalex.org/W2189374991","https://openalex.org/W2171537806","https://openalex.org/W4388213054","https://openalex.org/W2057430366","https://openalex.org/W2066947074"],"abstract_inverted_index":{"The":[0],"Cellular":[1],"Thermal":[2],"Shift":[3],"Assay":[4],"(CETSA)":[5],"plays":[6],"an":[7,31],"important":[8],"role":[9],"in":[10],"drug-target":[11],"identification,":[12],"and":[13,34,55,70,93,100,108,129],"statistical":[14],"analysis":[15,49,79],"is":[16,80,125],"a":[17],"crucial":[18],"step":[19],"significantly":[20],"affecting":[21],"conclusion.":[22],"We":[23],"put":[24],"forward":[25],"ProSAP":[26,123],"(Protein":[27],"Stability":[28],"Analysis":[29],"Pod),":[30],"open-source,":[32],"cross-platform":[33],"user-friendly":[35],"software":[36,124],"tool,":[37],"which":[38],"provides":[39],"multiple":[40],"methods":[41,90,118],"for":[42],"thermal":[43],"proteome":[44,51],"profiling":[45],"(TPP)":[46],"analysis,":[47],"nonparametric":[48],"(NPA),":[50],"integral":[52],"solubility":[53],"alteration":[54],"isothermal":[56],"shift":[57],"assay":[58],"(iTSA).":[59],"For":[60,97],"testing":[61],"the":[62,72,116],"performance":[63,73],"of":[64,74],"ProSAP,":[65],"we":[66],"processed":[67],"several":[68],"datasets":[69],"compare":[71],"different":[75],"algorithms.":[76],"Overall,":[77],"TPP":[78],"more":[81,103],"accurate":[82],"with":[83],"fewer":[84],"false":[85],"positive":[86],"targets,":[87],"but":[88,110],"NPA":[89],"are":[91],"flexible":[92],"free":[94],"from":[95],"parameters.":[96],"iTSA,":[98],"edgeR":[99],"DESeq2":[101],"identify":[102],"true":[104],"targets":[105],"than":[106],"t-test":[107],"Limma,":[109],"when":[111],"it":[112],"comes":[113],"to":[114],"ranking,":[115],"four":[117],"show":[119],"not":[120],"much":[121],"difference.":[122],"available":[126],"at":[127],"https://github.com/hcji/ProSAP":[128],"https://zenodo.org/record/5763315.":[130]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
