{"id":"https://openalex.org/W4210566243","doi":"https://doi.org/10.1093/bib/bbac052","title":"A multi-label learning framework for predicting antibiotic resistance genes via dual-view modeling","display_name":"A multi-label learning framework for predicting antibiotic resistance genes via dual-view modeling","publication_year":2022,"publication_date":"2022-02-02","ids":{"openalex":"https://openalex.org/W4210566243","doi":"https://doi.org/10.1093/bib/bbac052","pmid":"https://pubmed.ncbi.nlm.nih.gov/35272349"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac052","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac052","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079405950","display_name":"Weizhong Zhao","orcid":"https://orcid.org/0000-0001-8552-6084"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weizhong Zhao","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044623601","display_name":"Shujie Luo","orcid":"https://orcid.org/0000-0002-3752-7477"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shujie Luo","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001582879","display_name":"Haifang Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haifang Wu","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102010131","display_name":"Tingting He","orcid":"https://orcid.org/0000-0001-7523-6550"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101569679","display_name":"Xiaohua Hu","orcid":"https://orcid.org/0000-0002-4777-3022"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaohua Hu","raw_affiliation_strings":["College of Computing & Informatics, Drexel University, Philadelphia, PA 19104, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing & Informatics, Drexel University, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I72816309"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5079405950"],"corresponding_institution_ids":["https://openalex.org/I40963666"],"apc_list":{"value":4151,"currency":"USD","value_usd":4151},"apc_paid":null,"fwci":0.1415,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.32214837,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7110072374343872},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.657278299331665},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6310622096061707},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5414230227470398},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.5365277528762817},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5326169729232788},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5069385170936584},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4961768090724945},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.49569594860076904},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46071916818618774},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.447255402803421},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1506037712097168},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08204308152198792}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7110072374343872},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.657278299331665},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6310622096061707},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5414230227470398},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.5365277528762817},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5326169729232788},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5069385170936584},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4961768090724945},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.49569594860076904},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46071916818618774},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.447255402803421},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1506037712097168},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08204308152198792},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac052","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac052","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35272349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35272349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1307575636","display_name":"\u9762\u5411\u8111\u75be\u75c5\u7684\u4eba\u4f53\u80a0\u9053\u5fae\u751f\u7269\u7ec4\u5b66\u6570\u636e\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1820593694","display_name":"\u57fa\u4e8e\u591a\u7ec4\u5b66\u6570\u636e\u7684\u5fae\u751f\u7269\u9ad8\u9636\u76f8\u4e92\u4f5c\u7528\u9884\u6d4b\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61872157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G345651878","display_name":null,"funder_award_id":"CCNU19TD004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6496608217","display_name":null,"funder_award_id":"2019010701011392","funder_id":"https://openalex.org/F4320336636","funder_display_name":"Wuhan Science and Technology Project"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320336636","display_name":"Wuhan Science and Technology Project","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1555333427","https://openalex.org/W1562363118","https://openalex.org/W2001004762","https://openalex.org/W2008274231","https://openalex.org/W2037248153","https://openalex.org/W2037900484","https://openalex.org/W2045204781","https://openalex.org/W2069313265","https://openalex.org/W2073229442","https://openalex.org/W2073518110","https://openalex.org/W2117398483","https://openalex.org/W2118688136","https://openalex.org/W2129410020","https://openalex.org/W2134852597","https://openalex.org/W2135070766","https://openalex.org/W2141920771","https://openalex.org/W2156125289","https://openalex.org/W2158714788","https://openalex.org/W2167709283","https://openalex.org/W2179263669","https://openalex.org/W2179352600","https://openalex.org/W2236299009","https://openalex.org/W2419548415","https://openalex.org/W2544493586","https://openalex.org/W2549965616","https://openalex.org/W2559997609","https://openalex.org/W2584676873","https://openalex.org/W2897587353","https://openalex.org/W2900984733","https://openalex.org/W2908663744","https://openalex.org/W2921872415","https://openalex.org/W2951274106","https://openalex.org/W3006574710","https://openalex.org/W3021092377","https://openalex.org/W3088070507","https://openalex.org/W3128120098","https://openalex.org/W3177828909","https://openalex.org/W4293003482","https://openalex.org/W6633204885","https://openalex.org/W6661742627","https://openalex.org/W6676338569","https://openalex.org/W6685508055","https://openalex.org/W6729197512","https://openalex.org/W6729359939","https://openalex.org/W6760517126"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4224009465","https://openalex.org/W4286629047","https://openalex.org/W2084460089","https://openalex.org/W1629725936","https://openalex.org/W2300123279","https://openalex.org/W2360627962","https://openalex.org/W2477517397","https://openalex.org/W2564509174"],"abstract_inverted_index":{"The":[0],"increasing":[1],"prevalence":[2],"of":[3,15,20,54,97,129,137,161,179,186,208,215],"antibiotic":[4,25],"resistance":[5,26,99],"has":[6],"become":[7],"a":[8,105,135,141,151,169],"global":[9],"health":[10],"crisis.":[11],"For":[12],"the":[13,40,51,82,95,113,127,159,180,206,209,213],"purpose":[14],"safety":[16],"regulation,":[17],"it":[18],"is":[19,43,48,104,132,147,155,173],"high":[21],"importance":[22],"to":[23,61,77,81,86,108,157,175],"identify":[24,35,62],"genes":[27],"(ARGs)":[28],"in":[29,149],"bacteria.":[30],"Although":[31],"culture-based":[32],"methods":[33,74,91],"can":[34],"ARGs":[36,63,79,130,165,216],"relatively":[37],"more":[38],"accurately,":[39],"identifying":[41],"process":[42],"time-consuming":[44],"and":[45,140,191,202],"specialized":[46],"knowledge":[47],"required.":[49],"With":[50],"rapid":[52],"development":[53],"whole":[55],"genome":[56],"sequencing":[57],"technology,":[58],"researchers":[59],"attempt":[60],"by":[64],"computing":[65],"sequence":[66,84],"similarity":[67],"from":[68],"public":[69],"databases.":[70],"However,":[71],"these":[72],"computational":[73],"might":[75],"fail":[76],"detect":[78],"due":[80],"low":[83],"identity":[85],"known":[87],"ARGs.":[88,124],"Moreover,":[89],"existing":[90],"cannot":[92],"effectively":[93],"address":[94,112],"issue":[96],"multidrug":[98],"prediction":[100,131],"for":[101,122,164],"ARGs,":[102,187],"which":[103,150],"great":[106],"challenge":[107],"clinical":[109],"treatments.":[110],"To":[111],"challenges,":[114],"we":[115],"propose":[116],"an":[117],"end-to-end":[118,145],"multi-label":[119,138,162],"learning":[120,163],"framework":[121,146,211],"predicting":[123],"More":[125],"specifically,":[126],"task":[128,214],"modeled":[133],"as":[134],"problem":[136],"learning,":[139],"deep":[142],"neural":[143],"network-based":[144],"proposed,":[148],"specific":[152],"loss":[153],"function":[154],"introduced":[156],"employ":[158],"advantage":[160],"prediction.":[166,217],"In":[167],"addition,":[168],"dual-view":[170],"modeling":[171],"mechanism":[172],"employed":[174],"make":[176],"full":[177],"use":[178],"semantic":[181],"associations":[182],"among":[183],"two":[184],"views":[185],"i.e.":[188],"sequence-based":[189],"information":[190],"structure-based":[192],"information.":[193],"Extensive":[194],"experiments":[195],"are":[196],"conducted":[197],"on":[198,212],"publicly":[199],"available":[200],"data,":[201],"experimental":[203],"results":[204],"demonstrate":[205],"effectiveness":[207],"proposed":[210]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2022-02-08T00:00:00"}
