{"id":"https://openalex.org/W4210297211","doi":"https://doi.org/10.1093/bib/bbac046","title":"DLRAPom: a hybrid pipeline of Optimized XGBoost-guided integrative multiomics analysis for identifying targetable disease-related lncRNA\u2013miRNA\u2013mRNA regulatory axes","display_name":"DLRAPom: a hybrid pipeline of Optimized XGBoost-guided integrative multiomics analysis for identifying targetable disease-related lncRNA\u2013miRNA\u2013mRNA regulatory axes","publication_year":2022,"publication_date":"2022-01-31","ids":{"openalex":"https://openalex.org/W4210297211","doi":"https://doi.org/10.1093/bib/bbac046","pmid":"https://pubmed.ncbi.nlm.nih.gov/35224615"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac046","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac046/42806681/bbac046.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac046/42806681/bbac046.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046864714","display_name":"Chen Shen","orcid":"https://orcid.org/0000-0003-3535-8494"},"institutions":[{"id":"https://openalex.org/I4210139944","display_name":"Institute of Forensic Science","ror":"https://ror.org/04ry60e05","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210089256","https://openalex.org/I4210127390","https://openalex.org/I4210139944"]},{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Shen","raw_affiliation_strings":["Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science; Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science; Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I4210139944","https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science","institution_ids":["https://openalex.org/I4210139944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100606111","display_name":"Huiyu Li","orcid":"https://orcid.org/0000-0002-0749-7107"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiyu Li","raw_affiliation_strings":["Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100339707","display_name":"Miao Li","orcid":"https://orcid.org/0000-0002-5501-2856"},"institutions":[{"id":"https://openalex.org/I4210131893","display_name":"Second Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/03aq7kf18","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210131893"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Miao Li","raw_affiliation_strings":["Department of Ultrasound, the Second Affiliated Hospital, Xi\u2019an Jiaotong University, Xi\u2019an, China","Department of Ultrasound, the Second Affiliated Hospital, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Ultrasound, the Second Affiliated Hospital, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I4210131893"]},{"raw_affiliation_string":"Department of Ultrasound, the Second Affiliated Hospital, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I4210131893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101493331","display_name":"Yu Niu","orcid":"https://orcid.org/0000-0002-3841-2815"},"institutions":[{"id":"https://openalex.org/I4210163928","display_name":"First Hospital of Xi'an","ror":"https://ror.org/05hg8d082","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210163928"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Niu","raw_affiliation_strings":["Department of Endocrinology and Metabolism, Ninth Hospital of Xi\u2019an City, Xi\u2019an, China","Department of Endocrinology and Metabolism, Ninth Hospital of Xi'an City, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Endocrinology and Metabolism, Ninth Hospital of Xi\u2019an City, Xi\u2019an, China","institution_ids":["https://openalex.org/I4210163928"]},{"raw_affiliation_string":"Department of Endocrinology and Metabolism, Ninth Hospital of Xi'an City, Xi'an, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375083","display_name":"Jing Liu","orcid":"https://orcid.org/0000-0002-9728-8893"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Liu","raw_affiliation_strings":["Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100748869","display_name":"Li Zhu","orcid":"https://orcid.org/0000-0001-5249-6536"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Zhu","raw_affiliation_strings":["Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003696355","display_name":"Hongsheng Gui","orcid":"https://orcid.org/0000-0002-0460-7446"},"institutions":[{"id":"https://openalex.org/I154057602","display_name":"Henry Ford Health System","ror":"https://ror.org/02kwnkm68","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I154057602"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongsheng Gui","raw_affiliation_strings":["Center for Behavior Health and Psychiatry Research, Henry Ford Health System, Detroit, MI, USA"],"affiliations":[{"raw_affiliation_string":"Center for Behavior Health and Psychiatry Research, Henry Ford Health System, Detroit, MI, USA","institution_ids":["https://openalex.org/I154057602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101410036","display_name":"Wei Han","orcid":"https://orcid.org/0000-0003-0652-6794"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Han","raw_affiliation_strings":["Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100764855","display_name":"Huiying Wang","orcid":"https://orcid.org/0000-0003-0639-7507"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiying Wang","raw_affiliation_strings":["Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077305629","display_name":"Wenpei Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenpei Zhang","raw_affiliation_strings":["Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107956026","display_name":"Xiaochen Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaochen Wang","raw_affiliation_strings":["Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101941263","display_name":"Xiao Luo","orcid":"https://orcid.org/0000-0001-7359-4311"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao Luo","raw_affiliation_strings":["Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi'an Jiaotong University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Health Science Center, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110900022","display_name":"Yu Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161528","display_name":"Qilu Hospital of Shandong University","ror":"https://ror.org/056ef9489","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210161528"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yu Sun","raw_affiliation_strings":["Department of Endocrinology and Metabolism, Qilu Hospital of Shandong University, Ji\u2019nan, China","Department of Endocrinology and Metabolism, Qilu Hospital of Shandong University, Ji'nan, China"],"affiliations":[{"raw_affiliation_string":"Department of Endocrinology and Metabolism, Qilu Hospital of Shandong University, Ji\u2019nan, China","institution_ids":["https://openalex.org/I4210161528"]},{"raw_affiliation_string":"Department of Endocrinology and Metabolism, Qilu Hospital of Shandong University, Ji'nan, China","institution_ids":["https://openalex.org/I4210161528"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032174970","display_name":"Jiangwei Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiangwei Yan","raw_affiliation_strings":["Department of Genetics, School of Medicine & Forensics, Shanxi Medical University, Taiyuan, China"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine & Forensics, Shanxi Medical University, Taiyuan, China","institution_ids":["https://openalex.org/I17721919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077084977","display_name":"Fanglin Guan","orcid":"https://orcid.org/0000-0001-5135-3277"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]},{"id":"https://openalex.org/I4210139944","display_name":"Institute of Forensic Science","ror":"https://ror.org/04ry60e05","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210089256","https://openalex.org/I4210127390","https://openalex.org/I4210139944"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fanglin Guan","raw_affiliation_strings":["Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science; Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science"],"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science; Key Laboratory of National Ministry of Health for Forensic Sciences, School of Medicine & Forensics, Health Science Center, Xi\u2019an Jiaotong University, Xi\u2019an, China","institution_ids":["https://openalex.org/I4210139944","https://openalex.org/I87445476"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Forensic Medicine, Academy of Forensic Science","institution_ids":["https://openalex.org/I4210139944"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5032174970","https://openalex.org/A5077084977","https://openalex.org/A5101941263","https://openalex.org/A5110900022"],"corresponding_institution_ids":["https://openalex.org/I17721919","https://openalex.org/I4210139944","https://openalex.org/I4210161528","https://openalex.org/I87445476"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":1.2344,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.77701065,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/overfitting","display_name":"Overfitting","score":0.7641456127166748},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7361944913864136},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6455069184303284},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6106228828430176},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45740488171577454},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.44837579131126404},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4227755069732666},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4227231740951538},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.4224490225315094},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3090135455131531},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2579132318496704},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24182704091072083},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23391377925872803},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12772846221923828},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.10239660739898682}],"concepts":[{"id":"https://openalex.org/C22019652","wikidata":"https://www.wikidata.org/wiki/Q331309","display_name":"Overfitting","level":3,"score":0.7641456127166748},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7361944913864136},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6455069184303284},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6106228828430176},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45740488171577454},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.44837579131126404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4227755069732666},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4227231740951538},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.4224490225315094},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3090135455131531},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2579132318496704},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24182704091072083},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23391377925872803},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12772846221923828},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.10239660739898682},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbac046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac046","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac046/42806681/bbac046.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35224615","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35224615","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8921741","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8921741","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbac046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbac046","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbac046/42806681/bbac046.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5647106412","display_name":null,"funder_award_id":"82170873","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G573980765","display_name":null,"funder_award_id":"82030058","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6681292777","display_name":null,"funder_award_id":"81772033","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7050976364","display_name":null,"funder_award_id":"82171873","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7469335929","display_name":null,"funder_award_id":"81871190","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8478882202","display_name":null,"funder_award_id":"(2019","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4210297211.pdf","grobid_xml":"https://content.openalex.org/works/W4210297211.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W1995787603","https://openalex.org/W1999008082","https://openalex.org/W2002185065","https://openalex.org/W2016622896","https://openalex.org/W2016927106","https://openalex.org/W2073907360","https://openalex.org/W2080356693","https://openalex.org/W2103887497","https://openalex.org/W2112752274","https://openalex.org/W2146512944","https://openalex.org/W2148187752","https://openalex.org/W2159482845","https://openalex.org/W2276765849","https://openalex.org/W2295598076","https://openalex.org/W2340317262","https://openalex.org/W2540381357","https://openalex.org/W2571471366","https://openalex.org/W2600840322","https://openalex.org/W2611747160","https://openalex.org/W2741985169","https://openalex.org/W2745417329","https://openalex.org/W2748715550","https://openalex.org/W2779333186","https://openalex.org/W2793498210","https://openalex.org/W2884724578","https://openalex.org/W2891680741","https://openalex.org/W2893607500","https://openalex.org/W2911964244","https://openalex.org/W2939935027","https://openalex.org/W2943870140","https://openalex.org/W2950457615","https://openalex.org/W2976952765","https://openalex.org/W2999361189","https://openalex.org/W3003192283","https://openalex.org/W3004773979","https://openalex.org/W3012990378","https://openalex.org/W3013925125","https://openalex.org/W3029341961","https://openalex.org/W3044564606","https://openalex.org/W3045327256","https://openalex.org/W3049084893","https://openalex.org/W3092193366","https://openalex.org/W3101367638","https://openalex.org/W3163058596","https://openalex.org/W3164946018","https://openalex.org/W3185560091","https://openalex.org/W4241453085","https://openalex.org/W4294216483","https://openalex.org/W4294552392","https://openalex.org/W6761769668","https://openalex.org/W6795925930"],"related_works":["https://openalex.org/W1574414179","https://openalex.org/W4362597605","https://openalex.org/W3009056573","https://openalex.org/W2922073769","https://openalex.org/W4297676672","https://openalex.org/W4281702477","https://openalex.org/W4378510483","https://openalex.org/W4376166922","https://openalex.org/W2057742104","https://openalex.org/W4283692078"],"abstract_inverted_index":{"The":[0,66],"lack":[1],"of":[2,59,69,141,151,159,225],"a":[3,16,29,51,87,108,215],"reliable":[4],"and":[5,44,62,97,116,118,123,175,200,235],"easy-to-operate":[6],"screening":[7],"pipeline":[8,67,110],"for":[9,155,208,239],"disease-related":[10,32,45,230],"noncoding":[11,231],"RNA":[12,232],"regulatory":[13,34,47,179,188,233],"axis":[14,35,96,192,199],"is":[15,102],"problem":[17],"that":[18],"needs":[19],"to":[20,40,106,137,164,195,221],"be":[21,196],"solved":[22],"urgently.":[23],"To":[24],"address":[25],"this,":[26],"we":[27,131,169],"designed":[28],"hybrid":[30],"pipeline,":[31,217],"lncRNA-miRNA-mRNA":[33,46,95,178],"prediction":[36],"from":[37],"multiomics":[38,144,160],"(DLRAPom),":[39],"identify":[41],"risk":[42,172],"biomarkers":[43,75,85,174],"axes":[48],"by":[49,76,86,120],"adding":[50],"novel":[52,88],"machine":[53,89],"learning":[54,90],"model":[55,136,154],"on":[56,242],"the":[57,81,93,103,112,127,139,148,152,156,190,197,209],"basis":[58],"conventional":[60,77],"analysis":[61,158],"combining":[63,121],"experimental":[64],"validation.":[65],"consists":[68],"four":[70],"parts,":[71],"including":[72],"selecting":[73],"hub":[74],"bioinformatics":[78],"analysis,":[79],"discovering":[80],"most":[82],"essential":[83],"protein-coding":[84,173],"model,":[91],"extracting":[92],"key":[94,198],"validating":[98],"experimentally.":[99],"Our":[100],"study":[101],"first":[104,210],"one":[105],"propose":[107],"new":[109],"predicting":[111,228],"interactions":[113],"between":[114],"lncRNA":[115],"miRNA":[117],"mRNA":[119],"WGCNA":[122],"XGBoost.":[124],"Compared":[125],"with":[126,184,206],"methods":[128],"reported":[129],"previously,":[130],"developed":[132],"an":[133],"Optimized":[134],"XGBoost":[135],"reduce":[138],"degree":[140],"overfitting":[142],"in":[143],"data,":[145],"thereby":[146],"improving":[147],"generalization":[149],"ability":[150],"overall":[153],"integrated":[157],"data.":[161],"With":[162],"applications":[163],"gestational":[165],"diabetes":[166],"mellitus":[167],"(GDM),":[168],"predicted":[170,194],"nine":[171],"some":[176],"potential":[177,229],"axes,":[180,189],"which":[181],"all":[182],"correlated":[183],"GDM.":[185],"In":[186,212],"those":[187],"MALAT1/hsa-miR-144-3p/IRS1":[191],"was":[193,201],"identified":[202],"as":[203,214],"being":[204],"associated":[205],"GDM":[207],"time.":[211],"short,":[213],"flexible":[216],"DLRAPom":[218],"can":[219],"contribute":[220],"molecular":[222],"pathogenesis":[223],"research":[224,241],"diseases,":[226],"effectively":[227],"networks":[234],"providing":[236],"promising":[237],"candidates":[238],"functional":[240],"disease":[243],"pathogenesis.":[244]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-12T08:34:05.389933","created_date":"2025-10-10T00:00:00"}
