{"id":"https://openalex.org/W4210958364","doi":"https://doi.org/10.1093/bib/bbac039","title":"PGS-server: accuracy, robustness and transferability of polygenic score methods for biobank scale studies","display_name":"PGS-server: accuracy, robustness and transferability of polygenic score methods for biobank scale studies","publication_year":2022,"publication_date":"2022-02-12","ids":{"openalex":"https://openalex.org/W4210958364","doi":"https://doi.org/10.1093/bib/bbac039","pmid":"https://pubmed.ncbi.nlm.nih.gov/35193147"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac039","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac039","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038458325","display_name":"Sheng Yang","orcid":"https://orcid.org/0000-0003-3657-8771"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Sheng Yang","raw_affiliation_strings":["Department of Biostatistics, School of Public Health, Nanjing Medical University, Nanjing, Jiangsu 211166, China"],"raw_orcid":"https://orcid.org/0000-0003-3657-8771","affiliations":[{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, Nanjing Medical University, Nanjing, Jiangsu 211166, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051489598","display_name":"Xiang Zhou","orcid":"https://orcid.org/0000-0002-4331-7599"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiang Zhou","raw_affiliation_strings":["Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA","Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA"],"raw_orcid":"https://orcid.org/0000-0002-4331-7599","affiliations":[{"raw_affiliation_string":"Center for Statistical Genetics, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Biostatistics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038458325","https://openalex.org/A5051489598"],"corresponding_institution_ids":["https://openalex.org/I27837315","https://openalex.org/I83519826"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":6.7109,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.97253018,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transferability","display_name":"Transferability","score":0.7951681613922119},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7210263013839722},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7207062244415283},{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.713239312171936},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5995948314666748},{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.5475358963012695},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5086194276809692},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.42050454020500183},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37654006481170654},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26101458072662354},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2607744336128235},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20231464505195618},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.15838906168937683},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15612837672233582},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10072100162506104},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09385168552398682}],"concepts":[{"id":"https://openalex.org/C61272859","wikidata":"https://www.wikidata.org/wiki/Q7834031","display_name":"Transferability","level":3,"score":0.7951681613922119},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7210263013839722},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7207062244415283},{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.713239312171936},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5995948314666748},{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.5475358963012695},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5086194276809692},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.42050454020500183},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37654006481170654},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26101458072662354},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2607744336128235},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20231464505195618},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.15838906168937683},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15612837672233582},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10072100162506104},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09385168552398682},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C140331021","wikidata":"https://www.wikidata.org/wiki/Q1868104","display_name":"Logit","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018401","descriptor_name":"Sample Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018401","descriptor_name":"Sample Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018401","descriptor_name":"Sample Size","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020412","descriptor_name":"Multifactorial Inheritance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac039","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac039","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35193147","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35193147","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6272428210","display_name":null,"funder_award_id":"81703321","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320309652","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":86,"referenced_works":["https://openalex.org/W1952660301","https://openalex.org/W1980168725","https://openalex.org/W2021733365","https://openalex.org/W2039153962","https://openalex.org/W2047783882","https://openalex.org/W2066725248","https://openalex.org/W2069777680","https://openalex.org/W2077318478","https://openalex.org/W2081054994","https://openalex.org/W2082704080","https://openalex.org/W2098597355","https://openalex.org/W2099085143","https://openalex.org/W2101095383","https://openalex.org/W2105079646","https://openalex.org/W2105281057","https://openalex.org/W2124204548","https://openalex.org/W2136967659","https://openalex.org/W2139852278","https://openalex.org/W2153118028","https://openalex.org/W2155441570","https://openalex.org/W2159370862","https://openalex.org/W2264585211","https://openalex.org/W2280070832","https://openalex.org/W2310542696","https://openalex.org/W2568497456","https://openalex.org/W2587257410","https://openalex.org/W2598022332","https://openalex.org/W2608920382","https://openalex.org/W2613151407","https://openalex.org/W2622530291","https://openalex.org/W2725988230","https://openalex.org/W2755116403","https://openalex.org/W2781976437","https://openalex.org/W2789833091","https://openalex.org/W2794694102","https://openalex.org/W2801678388","https://openalex.org/W2886752110","https://openalex.org/W2895486342","https://openalex.org/W2896958236","https://openalex.org/W2932671560","https://openalex.org/W2947236019","https://openalex.org/W2949754140","https://openalex.org/W2950565052","https://openalex.org/W2951553270","https://openalex.org/W2952671741","https://openalex.org/W2956442594","https://openalex.org/W2962931338","https://openalex.org/W2963160524","https://openalex.org/W2966176854","https://openalex.org/W2969996045","https://openalex.org/W2975095072","https://openalex.org/W2983607182","https://openalex.org/W2988296254","https://openalex.org/W2988628428","https://openalex.org/W2991034145","https://openalex.org/W2994642650","https://openalex.org/W3007698544","https://openalex.org/W3012758303","https://openalex.org/W3020100939","https://openalex.org/W3030773662","https://openalex.org/W3038754476","https://openalex.org/W3039160019","https://openalex.org/W3045441625","https://openalex.org/W3046366876","https://openalex.org/W3047011785","https://openalex.org/W3047586714","https://openalex.org/W3082575318","https://openalex.org/W3091160076","https://openalex.org/W3093838039","https://openalex.org/W3111018742","https://openalex.org/W3134144599","https://openalex.org/W3136190300","https://openalex.org/W3157584621","https://openalex.org/W3159729952","https://openalex.org/W3159881528","https://openalex.org/W3159902810","https://openalex.org/W3181344512","https://openalex.org/W3184293501","https://openalex.org/W3197042856","https://openalex.org/W3205241549","https://openalex.org/W4205170775","https://openalex.org/W4247236552","https://openalex.org/W4250826121","https://openalex.org/W4294541781","https://openalex.org/W6794440584","https://openalex.org/W6828911396"],"related_works":["https://openalex.org/W4285087457","https://openalex.org/W3113746618","https://openalex.org/W4226051228","https://openalex.org/W3017691140","https://openalex.org/W4384208482","https://openalex.org/W4244742767","https://openalex.org/W2470939431","https://openalex.org/W2024651825","https://openalex.org/W4404536308","https://openalex.org/W3015000613"],"abstract_inverted_index":{"Polygenic":[0],"scores":[1],"(PGS)":[2],"are":[3],"important":[4,147],"tools":[5],"for":[6,149],"carrying":[7],"out":[8],"genetic":[9,144],"prediction":[10,127,183],"of":[11,22,30,36,52,137,174,189,228],"common":[12],"diseases":[13],"and":[14,32,78,96,103,135,181,205,221],"disease":[15],"related":[16],"complex":[17],"traits,":[18],"facilitating":[19],"the":[20,27,33,50,83,126,212,225],"development":[21],"precision":[23],"medicine.":[24],"Unfortunately,":[25],"despite":[26],"critical":[28,58],"importance":[29],"PGS":[31,37,53,70,139,153,167,195,208,229],"vast":[34],"number":[35],"methods":[38,71,140,170,209],"recently":[39],"developed,":[40],"few":[41],"comprehensive":[42,64],"comparison":[43,65],"studies":[44,114],"have":[45],"been":[46],"performed":[47,62],"to":[48,93,121,171,178,201,210],"evaluate":[49,125],"effectiveness":[51],"methods.":[54,154],"To":[55,185],"fill":[56],"this":[57],"knowledge":[59],"gap,":[60],"we":[61,158,191],"a":[63,160,194],"study":[66],"on":[67,75,107],"12":[68],"different":[69,138,169,207,231],"through":[72,97],"internal":[73],"evaluations":[74,99],"25":[76,79,101],"quantitative":[77],"binary":[80],"traits":[81],"within":[82],"UK":[84],"Biobank":[85],"with":[86,115],"sample":[87,116],"sizes":[88,117],"ranging":[89,118],"from":[90,110,119,168],"147":[91],"408":[92],"336":[94],"573,":[95],"external":[98],"via":[100],"cross-study":[102],"112":[104],"cross-ancestry":[105],"analyses":[106],"summary":[108,203],"statistics":[109,204],"multiple":[111,166],"genome-wide":[112],"association":[113],"1415":[120],"329":[122],"345.":[123],"We":[124,215],"accuracy,":[128],"computational":[129],"scalability,":[130],"as":[131,133],"well":[132],"robustness":[134],"transferability":[136],"across":[141,230],"datasets":[142],"and/or":[143],"ancestries,":[145],"providing":[146],"guidelines":[148],"practitioners":[150],"in":[151],"choosing":[152],"Besides":[155],"method":[156,220],"comparison,":[157],"present":[159],"simple":[161],"aggregation":[162],"strategy":[163],"that":[164,198,217],"combines":[165],"take":[172],"advantage":[173],"their":[175],"distinct":[176],"benefits":[177],"achieve":[179],"stable":[180],"superior":[182],"performance.":[184],"facilitate":[186,224],"future":[187],"applications":[188],"PGS,":[190],"also":[192],"develop":[193],"webserver":[196,222],"(http://www.pgs-server.com/)":[197],"allows":[199],"users":[200],"upload":[202],"choose":[206],"fit":[211],"data":[213],"directly.":[214],"hope":[216],"our":[218],"results,":[219],"will":[223],"routine":[226],"application":[227],"research":[232],"areas.":[233]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4}],"updated_date":"2026-05-28T09:10:13.091523","created_date":"2025-10-10T00:00:00"}
