{"id":"https://openalex.org/W4210459809","doi":"https://doi.org/10.1093/bib/bbac035","title":"LBCEPred: a machine learning model to predict linear B-cell epitopes","display_name":"LBCEPred: a machine learning model to predict linear B-cell epitopes","publication_year":2022,"publication_date":"2022-01-27","ids":{"openalex":"https://openalex.org/W4210459809","doi":"https://doi.org/10.1093/bib/bbac035","pmid":"https://pubmed.ncbi.nlm.nih.gov/35262658"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbac035","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac035","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059292065","display_name":"Wajdi Alghamdi","orcid":"https://orcid.org/0000-0002-7999-2561"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Wajdi Alghamdi","raw_affiliation_strings":["Department of Information Technology, Faculty of Computing and Information Technology, King Abdulaziz University, P.O. Box 80221, Jeddah, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Faculty of Computing and Information Technology, King Abdulaziz University, P.O. Box 80221, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019971091","display_name":"Muhammad Attique","orcid":"https://orcid.org/0000-0001-8973-2993"},"institutions":[{"id":"https://openalex.org/I1323252656","display_name":"Information Technology University","ror":"https://ror.org/00ngv8j44","country_code":"PK","type":"education","lineage":["https://openalex.org/I1323252656"]},{"id":"https://openalex.org/I87482320","display_name":"University of Management and Technology","ror":"https://ror.org/0095xcq10","country_code":"PK","type":"education","lineage":["https://openalex.org/I87482320"]},{"id":"https://openalex.org/I99165933","display_name":"University of Gujrat","ror":"https://ror.org/01xe5fb92","country_code":"PK","type":"education","lineage":["https://openalex.org/I99165933"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Muhammad Attique","raw_affiliation_strings":["Department of Computer Science, University of Management and Technology, Lahore, 54000, Pakistan","Department of Information Technology, University of Gujrat, Gujrat, 50700, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Management and Technology, Lahore, 54000, Pakistan","institution_ids":["https://openalex.org/I87482320"]},{"raw_affiliation_string":"Department of Information Technology, University of Gujrat, Gujrat, 50700, Pakistan","institution_ids":["https://openalex.org/I99165933","https://openalex.org/I1323252656"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046896093","display_name":"Ebraheem Alzahrani","orcid":"https://orcid.org/0000-0003-2413-0355"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Ebraheem Alzahrani","raw_affiliation_strings":["Department of Mathematics, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006450000","display_name":"Malik Zaka Ullah","orcid":"https://orcid.org/0000-0003-2944-0352"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Malik Zaka Ullah","raw_affiliation_strings":["Department of Mathematics, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Faculty of Science, King Abdulaziz University, P.O. Box 80203, Jeddah 21589, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075858344","display_name":"Yaser Daanial Khan","orcid":"https://orcid.org/0000-0002-2482-275X"},"institutions":[{"id":"https://openalex.org/I87482320","display_name":"University of Management and Technology","ror":"https://ror.org/0095xcq10","country_code":"PK","type":"education","lineage":["https://openalex.org/I87482320"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Yaser Daanial Khan","raw_affiliation_strings":["Department of Computer Science, University of Management and Technology, Lahore, 54000, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Management and Technology, Lahore, 54000, Pakistan","institution_ids":["https://openalex.org/I87482320"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075858344"],"corresponding_institution_ids":["https://openalex.org/I87482320"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.1193,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.92767647,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9398837089538574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6753929853439331},{"id":"https://openalex.org/keywords/immune-recognition","display_name":"Immune recognition","score":0.6089336276054382},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.587994396686554},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5310835242271423},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.52538001537323},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5208442807197571},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.48945581912994385},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4859865605831146},{"id":"https://openalex.org/keywords/linear-epitope","display_name":"Linear epitope","score":0.47324901819229126},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40823206305503845},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3410760760307312},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24947652220726013},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.15606507658958435}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9398837089538574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6753929853439331},{"id":"https://openalex.org/C3018252375","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune recognition","level":3,"score":0.6089336276054382},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.587994396686554},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5310835242271423},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.52538001537323},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5208442807197571},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.48945581912994385},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4859865605831146},{"id":"https://openalex.org/C78598654","wikidata":"https://www.wikidata.org/wiki/Q17140316","display_name":"Linear epitope","level":4,"score":0.47324901819229126},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40823206305503845},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3410760760307312},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24947652220726013},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.15606507658958435},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/bbac035","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bib/bbac035","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35262658","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35262658","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2490639330","display_name":null,"funder_award_id":"RG-83-130-38","funder_id":"https://openalex.org/F4320322322","funder_display_name":"King Abdulaziz University"}],"funders":[{"id":"https://openalex.org/F4320322322","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":87,"referenced_works":["https://openalex.org/W1481701911","https://openalex.org/W1530470635","https://openalex.org/W1976801077","https://openalex.org/W1999565480","https://openalex.org/W2004490529","https://openalex.org/W2005779329","https://openalex.org/W2010289445","https://openalex.org/W2018470704","https://openalex.org/W2021495307","https://openalex.org/W2032401333","https://openalex.org/W2034126715","https://openalex.org/W2048848017","https://openalex.org/W2053707749","https://openalex.org/W2059178238","https://openalex.org/W2060907336","https://openalex.org/W2061151008","https://openalex.org/W2087230890","https://openalex.org/W2091852797","https://openalex.org/W2092240438","https://openalex.org/W2097874743","https://openalex.org/W2101234009","https://openalex.org/W2106150646","https://openalex.org/W2107432340","https://openalex.org/W2110474492","https://openalex.org/W2112129368","https://openalex.org/W2118943119","https://openalex.org/W2130887658","https://openalex.org/W2132580736","https://openalex.org/W2137575262","https://openalex.org/W2147863530","https://openalex.org/W2158781610","https://openalex.org/W2160397907","https://openalex.org/W2165224041","https://openalex.org/W2611314002","https://openalex.org/W2626952031","https://openalex.org/W2767250699","https://openalex.org/W2777980778","https://openalex.org/W2906411860","https://openalex.org/W2912228103","https://openalex.org/W2968944936","https://openalex.org/W2998167402","https://openalex.org/W2999309192","https://openalex.org/W3003644051","https://openalex.org/W3004222371","https://openalex.org/W3018838420","https://openalex.org/W3019617034","https://openalex.org/W3030201038","https://openalex.org/W3033500825","https://openalex.org/W3048350608","https://openalex.org/W3048439402","https://openalex.org/W3082441088","https://openalex.org/W3086901785","https://openalex.org/W3092000154","https://openalex.org/W3109724560","https://openalex.org/W3112601518","https://openalex.org/W3119775068","https://openalex.org/W3134539395","https://openalex.org/W3135912448","https://openalex.org/W3137649039","https://openalex.org/W3159663509","https://openalex.org/W3162566731","https://openalex.org/W3167569857","https://openalex.org/W3169622143","https://openalex.org/W3188948283","https://openalex.org/W3203395656","https://openalex.org/W3204658953","https://openalex.org/W3209211977","https://openalex.org/W3209675702","https://openalex.org/W3212066946","https://openalex.org/W3214729651","https://openalex.org/W4200299925","https://openalex.org/W4248215625","https://openalex.org/W4301969137","https://openalex.org/W4320800886","https://openalex.org/W6619045798","https://openalex.org/W6631514214","https://openalex.org/W6675354045","https://openalex.org/W6678130231","https://openalex.org/W6682243681","https://openalex.org/W6739767020","https://openalex.org/W6757509808","https://openalex.org/W6772698027","https://openalex.org/W6773385203","https://openalex.org/W6779119114","https://openalex.org/W6787331873","https://openalex.org/W6791271152","https://openalex.org/W6796096176"],"related_works":["https://openalex.org/W3145510187","https://openalex.org/W2003116223","https://openalex.org/W3096915742","https://openalex.org/W1991572753","https://openalex.org/W3139969521","https://openalex.org/W4241031629","https://openalex.org/W1996102030","https://openalex.org/W2062700146","https://openalex.org/W2029383042","https://openalex.org/W2016943232"],"abstract_inverted_index":{"B-cell":[0,24,119,138],"epitopes":[1,25,59,84,120,139],"have":[2,77],"the":[3,10,17,41,56,81,89,118,122,137,149,152,186,199,203],"capability":[4],"to":[5,9,15,116,159,175,198],"recognize":[6],"and":[7,35,46,52,68,112,145,182,189,202],"attach":[8],"surface":[11],"of":[12,23,43,48,58,83,94,155,205],"antigen":[13],"receptors":[14],"stimulate":[16],"immune":[18],"system":[19],"against":[20],"pathogens.":[21],"Identification":[22],"from":[26,121],"antigens":[27],"has":[28,183],"a":[29,65,103],"great":[30],"significance":[31],"in":[32,40,88,134,194],"several":[33],"biomedical":[34],"biotechnological":[36],"applications,":[37],"provides":[38],"support":[39],"development":[42,47],"therapeutics,":[44],"design":[45],"an":[49],"epitope-based":[50],"vaccine":[51],"antibody":[53],"production.":[54],"However,":[55,74],"identification":[57,82],"with":[60,108,141],"experimental":[61],"mapping":[62],"approaches":[63],"is":[64,163,173],"challenging":[66],"job":[67],"usually":[69],"requires":[70],"extensive":[71],"laboratory":[72],"efforts.":[73],"considerable":[75,95],"efforts":[76],"been":[78],"placed":[79],"for":[80,136,168,179],"using":[85],"computational":[86],"methods":[87],"recent":[90],"past":[91],"but":[92],"deprived":[93],"achievements.":[96],"In":[97],"this":[98],"study,":[99],"we":[100,192],"present":[101],"LBCEPred,":[102],"python-based":[104],"web-tool":[105],"(http://lbcepred.pythonanywhere.com/),":[106],"build":[107],"random":[109],"forest":[110],"classifier":[111],"statistical":[113],"moment-based":[114],"descriptors":[115],"predict":[117],"protein":[123],"sequences.":[124],"LBECPred":[125],"outperforms":[126],"all":[127],"sequence-based":[128],"available":[129],"models":[130,157,162,187],"that":[131],"are":[132],"currently":[133],"use":[135,176],"prediction,":[140],"0.868":[142],"accuracy":[143],"value":[144],"0.934":[146],"area":[147,204],"under":[148],"curve.":[150],"Moreover,":[151],"prediction":[153],"performance":[154],"proposed":[156],"compared":[158],"other":[160],"state-of-the-art":[161],"56.3%":[164],"higher":[165],"on":[166],"average":[167],"Mathews":[169],"Correlation":[170],"Coefficient.":[171],"LBCEPred":[172],"easy":[174],"tool":[177],"even":[178],"novice":[180],"users":[181],"also":[184],"shown":[185],"stability":[188],"reliability,":[190],"thus":[191],"believe":[193],"its":[195],"significant":[196],"contribution":[197],"research":[200],"community":[201],"bioinformatics.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
